Commit graph

27690 commits

Author SHA1 Message Date
Manuela Kuhn
94435778ba
py-datalad-metalad: add 0.4.5 and new package py-datalad-metadata-model (#32811)
* py-datalad-metalad: add 0.4.5

* Update var/spack/repos/builtin/packages/py-datalad-metalad/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-26 11:25:43 -06:00
Manuela Kuhn
f8e23b4fbe
py-cryptography: add 38.0.1 (#32809)
* py-cryptography: add 38.0.1

* Fix rust dependency
2022-09-26 10:38:01 -06:00
Alberto Invernizzi
b1fda5dd64
add neovim version 0.7.2 (#32815) 2022-09-26 09:10:38 -07:00
akhursev
5fbbc5fa68
2022.3 oneAPI release promotion (#32786)
In addition to the new release, made intel-oneapi-compilers-classic version number match the compiler version number, instead of the version of the package that contains it.

Co-authored-by: Robert Cohn <robert.s.cohn@intel.com>
2022-09-26 10:01:59 -06:00
Seth R. Johnson
494946d020
celeritas: new versions 0.1.2,3 (#32803) 2022-09-26 08:50:14 -07:00
Manuela Kuhn
7c5a417bb3
py-bottleneck: add 1.3.5 and py-versioneer: add 0.26 (#32780)
* py-bottleneck: add 1.3.5

* Fix sha256 for version 0.18

* Fix python dependency
2022-09-26 10:47:37 -05:00
Manuela Kuhn
beab39eb3c
py-coverage: add 6.4.4 (#32789)
* py-coverage: add 6.4.4

* Fix python version in +toml variant
2022-09-26 10:46:23 -05:00
Manuela Kuhn
100eb5014a
py-datalad-container: add 1.1.7 (#32810) 2022-09-26 10:42:25 -05:00
Laurent Aphecetche
a5bf7f458d
root: make X11 really optional on macOS (#32661)
* root: make X11 really optional on macOS
* Update var/spack/repos/builtin/packages/root/package.py
* remove when clauses in provides

Co-authored-by: Hadrien G. <knights_of_ni@gmx.com>
2022-09-26 08:37:21 -07:00
Manuela Kuhn
b961cfa8d6
py-debugpy: add 1.6.3 (#32812) 2022-09-26 10:35:59 -05:00
Manuela Kuhn
07157306b2
py-distro: add 1.7.0 (#32813) 2022-09-26 10:34:43 -05:00
Laurent Aphecetche
3aa93ca79d
arrow: add version 9 and more variants (#32701)
* utf8proc: add version 2.7.0 and shared variant
* xsimd: add version 8.1.0
* arrow: add version 9.0.0 and more variants
2022-09-26 08:30:24 -07:00
Adam J. Stewart
b7926eb6c8
py-py2cairo: only supports Python 2 (#32818) 2022-09-26 17:14:20 +02:00
Adam J. Stewart
1f6545c1c7
gcc: add Apple Silicon support for newer versions (#32702) 2022-09-26 16:21:25 +02:00
Auriane R
677a862fb9
Adapt pika to use the p2300 spack package (#32667)
* Adapt pika to use the p2300 spack package

* Fix formatting with black
2022-09-26 15:07:26 +02:00
Massimiliano Culpo
93dc500f41 py-pkgutil-resolve-name: fix issue with UTF-8 character
This modifications breaks `develop` since it doesn't
pass audits with Python 2.7 It is to be investigated
why audits pass in CI for the PR and the issue is
revealed only when the package is pushed to develop.
2022-09-26 14:47:13 +02:00
Massimiliano Culpo
ecce657509 Remove "tut" from the "build-systems" pipeline
PR #32615 deprecated Python versions up to 3.6.X. Since
the "build-systems" pipeline requires Python 3.6.15 to
build "tut", it will fail on the first rebuild that
involves Python.

The "tut" package is meant to perform an end-to-end
test of the "Waf" build-system, which is scarcely
used. The fix therefore is just to remove it from
the pipeline.
2022-09-26 14:47:13 +02:00
John W. Parent
30f6fd8dc0
Fetching/decompressing: use magic numbers (#31589)
Spack currently depends on parsing filenames of downloaded files to
determine what type of archive they are and how to decompress them.
This commit adds a preliminary check based on magic numbers to
determine archive type (but falls back on name parsing if the
extension type cannot be determined).

As part of this work, this commit also enables decompression of
.tar.xz-compressed archives on Windows.
2022-09-26 00:01:42 -07:00
iarspider
a5ea566bdf
Update py-poetry to 1.2.1 (including new packages) (#32776)
* Update py-poetry to 1.2.1

* Update py-xattr

* Apply style from review

* Apply suggestions from code review (part 1)

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Changes from review - 2

* Fix typo

* Fix style

* Add missing py-dulwich version

* Update var/spack/repos/builtin/packages/py-poetry-core/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-poetry/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-poetry/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Apply changes from review

* Add py-backports-cached-property and fix style

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-25 12:36:42 -05:00
Sergey Kosukhin
5dc440ea92
py-eccodes: add version 1.5.0 (#32792)
* py-eccodes: ensure the minimal recommended shared version of libeccodes

* py-eccodes: set less general environment variables to enable location of libeccodes

* py-eccodes: add version 1.5.0

* py-eccodes: make flake8 happy
2022-09-24 16:00:45 -05:00
Manuela Kuhn
d9b7bedaaa
py-cppy: add 1.2.1 (#32790)
* py-cppy: add 1.2.1

* Update var/spack/repos/builtin/packages/py-cppy/package.py

Co-authored-by: iarspider <iarspider@gmail.com>

Co-authored-by: iarspider <iarspider@gmail.com>
2022-09-24 15:57:55 -05:00
Manuela Kuhn
00753d49da
py-click: add 8.1.3 (#32788) 2022-09-24 15:53:42 -05:00
Valentin Volkl
5573ccee53
py-colorcet: add new package (#31597)
* py-colorcet: add new package

* style

* py-colorcet: depend on python 2.7:

* address pr review comments

* address pr review comments

* style
2022-09-24 15:52:14 -05:00
Manuela Kuhn
b721f8038f
py-ci-info: add 0.3.0 (#32785) 2022-09-24 15:49:58 -05:00
Manuela Kuhn
08371954bb
py-charset-normalizer: add 2.1.1 (#32784) 2022-09-24 15:49:16 -05:00
Manuela Kuhn
3e4bf1e400
py-cfgv: add 3.3.1 (#32782) 2022-09-24 15:48:30 -05:00
Manuela Kuhn
cd58ae23be
py-chardet: add 3.0.2 (#32783) 2022-09-24 15:47:37 -05:00
Manuela Kuhn
184af723e4
py-certifi: add 2022.9.14 (#32781) 2022-09-24 15:46:32 -05:00
Manuela Kuhn
c2aab98920
py-beautifulsoup4: add 4.11.1 (#32779) 2022-09-24 15:42:47 -05:00
iarspider
6ee7b5ad91
Add checksum for py-hist 2.6.1, py-boost-histogram 1.3.1 (#32787)
* Add checksum for py-hist 2.6.1

* Swap when and type
2022-09-24 15:41:18 -05:00
iarspider
02e4d4e546
Add checksum for py-google-auth 2.11.0, py-cachetools 5.2.0 (#32791)
* Add checksum for py-google-auth 2.11.0

* Swap when and type

* Update package.py
2022-09-24 15:27:19 -05:00
Tamara Dahlgren
4751881fd1
Fix two docstring typos (#32751) 2022-09-23 11:17:01 -07:00
Manuela Kuhn
3f28ef89cc
py-pytz: add 2022.2.1 (#32711) 2022-09-23 09:30:01 -06:00
Daryl W. Grunau
ca62819261
Packages/py scipy (#32767) 2022-09-23 07:41:44 -06:00
Manuela Kuhn
4bfa61c149
py-attrs: add 22.1.0 (#32762) 2022-09-23 04:09:44 -06:00
Harmen Stoppels
2fa9aff206
gitlab: cuda not compatible amazon linux 2 (#32678)
amazon linux 2 ships a glibc that is too old to work with cuda toolkit
for aarch64.

For example:

`libcurand.so.10.2.10.50` requires the symbol `logf@@GLIBC_2.27`, but
glibc is at 2.26.

So, these specs are removed.
2022-09-23 11:01:59 +02:00
Manuela Kuhn
e98e27ac3f
py-asttokens: add 2.0.8 (#32760) 2022-09-23 02:49:43 -06:00
iarspider
86958669cf
New packages: py-conan, py-node-semver, py-patch-ng (#32753)
* New packages: py-conan, py-node-semver, py-patch-ng

* Update var/spack/repos/builtin/packages/py-conan/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-conan/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-23 02:17:42 -06:00
Peter Scheibel
0a050785e9
Skip all tests using problematic fixture on python 2.7 (#32768) 2022-09-23 09:29:48 +02:00
Manuela Kuhn
8f5b847cb0
py-babel: add 2.10.3 (#32763)
* py-babel: add 2.10.3

* Update var/spack/repos/builtin/packages/py-babel/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-22 18:29:38 -06:00
iarspider
cbde650eed
New package: py-jaraco-classes (#32759)
* New package: py-jaraco-classes

* Update var/spack/repos/builtin/packages/py-jaraco-classes/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-22 14:41:53 -06:00
Matthieu Dorier
b18ab062cf
[py-tinydb] Added package py-tinydb (#32752)
* [py-tinydb] added package py-tinydb

* [py-tinydb] corrected version in dependency for py-tinydb

* [py-tinydb] update python dependency

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* [py-tinydb] update dependency

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-22 15:32:19 -05:00
Peter Scheibel
4094e59ab8
Fetching: log more exceptions (#32736)
Include exception info related to url retrieval in debug messages
which otherwise would be swallowed. This is intended to be useful
for detecting if CA configuration interferes with downloads from
HTTPS links.
2022-09-22 10:54:52 -07:00
Adam J. Stewart
0869d22fcb
py-pytorch-lightning: add v1.7.7 (#32765) 2022-09-22 10:22:45 -07:00
Manuela Kuhn
be38400ce2
py-anyio: add 3.6.1 (#32756) 2022-09-22 10:30:14 -06:00
Hans Fangohr
2ad47c8ab2
Enable use of latest version of Octopus (12.0) (#32758)
Release notes:
https://www.octopus-code.org/documentation/main/releases/octopus-12/
2022-09-22 08:50:59 -07:00
iarspider
83d55daae5
New package: cepgen (#32754) 2022-09-22 08:47:44 -07:00
Andrey Alekseenko
0ddbb92ae3
GROMACS: update CMake version, and a couple more fixes (#32748)
- GROMACS is not an acronym (https://www.gromacs.org/about.html).
- GROMACS switched to LGPL a long time ago, so let's mention it first.
- CMake version required for `main` has been bumped to 3.18
  (https://gitlab.com/gromacs/gromacs/-/merge_requests/3093)
- `-DGMX_USE_OPENCL` flag was used before 2021; for newer versions,
  `-DGMX_GPU=OpenCL` is enough.
2022-09-22 07:10:30 -05:00
Tamara Dahlgren
54d06fca79
Add hash hint to multi-spec message (#32652) 2022-09-22 09:18:43 +02:00
Sreenivasa Murthy Kolam
457daf4be6
Add new variants (OPENCL and HIP) for MIVisionX recipe and their dependencies correctly. (#32486)
* add the 2 variants OPENCL and HIP and their dependencies correctly
for OPENCL - rocm-opencl, miopengemm and miopen-opencl
for HIP - miopen-hip
Earlier this was adding both the dependencies -miopen-hip and miopen-opencl
for both the backends which did not seem correct.
Also corrected the miopen-hip or miopen-opencl config.h  in patch() depending on the
backend
Also added libjpeg-turbo as it is required for building ROCAl .
the AMDRpp is still required for ROCAL inclusion but it currently does not build
AMDRpp will be added as a new spack recipe and the mivisionx will refer to that as a
dependency in future.

* fix style errors
* bump up the version for 5.2.3 release. tested +opencl, +hip and ~hip~opencl(cpu backend)

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-21 16:54:40 -07:00