dlkuehn
24fecdc738
rnaz: add version 2.1.1 and git repository to newest version. ( #30349 )
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Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-05-05 10:32:41 +02:00
snehring
4a228055e2
trimmomatic: adding more flexible java dep ( #30488 )
2022-05-05 10:21:20 +02:00
Wouter Deconinck
17ede26cea
flatbufffers: patches are in v2.0.0 ( #30492 )
2022-05-05 10:14:10 +02:00
SXS Bot
8bcccbeac7
spectre: add v2022.05.05 ( #30493 )
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Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
2022-05-05 09:49:25 +02:00
Greg Becker
e6346eb033
spack external find: add search path customization ( #30479 )
2022-05-05 08:59:44 +02:00
Seth R. Johnson
a5d06325e7
qt: fix ~opengl and use_spack_dep ( #30487 )
2022-05-04 22:41:37 -04:00
Dan Bonachea
9bb23a7f46
UPC++: minor packaging improvements ( #30482 )
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* upcxx: Add `spack external find` support
* upcxx: Minor tweaks to Shasta support
2022-05-04 15:27:21 -07:00
Andrea Valenzuela
5a434cb840
Add scitokens-cpp recipe and also as a variant for xrootd ( #30362 )
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* Add scitokens-cpp recipe
* Add scitokens-cpp variant in xrootd
* Fix typo
* Fix flake8 style errors
* Update license date
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-04 13:03:50 -07:00
iarspider
0be5dea13f
Fix professor recipe ( #30002 )
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* [WIP] Cleanup professor dependencies
* Add dependency on ROOT
* Remove direct dependency on wxwidgets
* `prof-I` tool requires matplotlib with wxwidgets backend, made that optional
* Update package.py
* Update package.py (#38 )
* Update package.py
* Update package.py
2022-05-04 11:19:43 -07:00
David
b6f2a70f7b
Update gtk-doc depends for tce findings ( #30337 )
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gtk-doc can call pkg-config when used at runtime, so pkgconfig needs
to be a runtime requirement.
itstool needs to be a build-time requirement.
2022-05-04 11:17:34 -07:00
Olivier Cessenat
0d3d1ea7d0
gxsview: vtk9 no longer builds libvtkjpeg... ( #30340 )
2022-05-04 11:12:49 -07:00
Andrea Valenzuela
39c4a66e5b
Add checksum for py-prompt-toolkit@3.0.29 ( #30330 )
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Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
2022-05-04 11:53:53 -06:00
Carlos Bederián
0bd0ba53a3
curl: tls=mbedtls requires fPIC ( #30447 )
2022-05-04 10:53:33 -07:00
snehring
e24373f262
gatk: updating and expanding java dependency ( #30476 )
2022-05-04 17:51:44 +00:00
Adam J. Stewart
b7f33fb393
Python package: add backup BINDIR setting ( #30408 )
2022-05-04 10:50:18 -07:00
Chuck Atkins
250d5d2c00
qt: Assimp dependency specificationa is more nuanced ( #30460 )
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libassimp has been a dependency for all of 5.x but expressing that has
varied significantly throughout the 5.x lifecycle:
v5.0: qt3d uses internal-only libassimp
v5.5: external-only libassimp
v5.6: either internal or external libassimp via autodetection
v5.9: user-selectable internal-vs-external via -assimp
v5.14: additional qtquick3d module uses -assimp
v5.15: qtquick3d switches to the -quick3d-assimp option
* current bug where the incorrect target is setup
2022-05-04 13:30:15 -04:00
Sergey Kosukhin
8b0f6187e0
bugfix: fix filter_compiler_wrappers for Cray compiler ( #29786 )
2022-05-04 10:13:12 -07:00
Adam J. Stewart
8bf988abb9
GDAL: add v3.4.3 ( #30474 )
2022-05-04 16:34:17 +00:00
Bitllion
aab7dcaad9
add package: abacus ( #30416 )
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* add pacakge: abacus
* rename
* fix some style bugs
* update package:abacus
* fix some style bugs
* format code
* Delete a line of useless comments
* updatee abacus
2022-05-04 09:29:08 -07:00
Mikael Simberg
5b68fa1ecb
Add mimalloc package with use in HPX and pika ( #30457 )
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* Add mimalloc package
* Add mimalloc as allocator option to pika
* Add mimalloc as allocator option to hpx
* Set git property globally instead of per-version in pika, hpx, and mimalloc packages
Co-authored-by: Mikael Simberg <mikael.simberg@iki.if>
2022-05-04 09:19:15 -07:00
acastanedam
4d03a2768e
gpi-2_fix_deps: setup 'gawk' and 'sed' dependencies ( #29740 )
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Strictly, `sed` is a `build` and `run` dependency in all gpi-2
versions, whereas `gawk` is a `run` (`build` and `run`) dependency for
gpi-2 versions greater or equal (less) than 1.4.0
2022-05-04 09:14:21 -07:00
Scott Wittenburg
6b6147d5a0
gitlab: Remove temporary storage url from all stacks ( #29949 )
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Gitlab pipelines run for spack already have other S3 storage locations
configured for storage of binaries, so this PR removes the redundant
per-pipeline mirror. As a result, the "cleanup" jobs will no longer be
generated at the end of each pipeline, removing one possible point of
pipeline failure.
2022-05-04 09:18:47 -06:00
Andrea Valenzuela
6702e87ee4
Add checksum for version 1.1.13 and update dependencies ( #30470 )
2022-05-04 10:08:43 -05:00
fpruvost
7ad5ca2cc3
chameleon: add maintainers information ( #30472 )
2022-05-04 08:57:44 -06:00
Auriane R
2418cfb79b
pika: Add 0.4.0 release ( #30469 )
2022-05-04 16:29:30 +02:00
Ross Miller
9486c76d70
Use gccgo to bootstrap go on aarch64 ( #30350 )
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The go-bootstrap package doesn't work on aarch64 platforms, so the only way
to build Go is to use gccgo.
Also, some versions of gccgo have a bug that prevents them from compiling
go (see golang/go#47771 ), so this patch limits gcc to versions newer than
10.4.0 or 11.3.0.
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-05-04 16:16:53 +02:00
fpruvost
dc99fe98b9
chameleon: add new package ( #30368 )
2022-05-04 08:09:54 -06:00
Andrea Valenzuela
cb97b25646
Add checksum for py-plac@1.3.5 ( #30327 )
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Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
2022-05-04 08:06:11 -06:00
Andrea Valenzuela
a84593a510
Add checksum for py-networkx@2.7.1 and fix python dependency ( #30326 )
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Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
2022-05-04 08:05:51 -06:00
Paul Ferrell
2f6556ea82
mesa: intel needs c99 standard specified under intel. ( #30334 )
2022-05-04 14:21:25 +02:00
snehring
b4213b2c60
maq: adding perl dep, addressing gcc errors ( #30312 )
2022-05-04 14:07:02 +02:00
lpoirel
e378d96d15
namd: place an upper bound on the charmpp dependency version ( #30397 )
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Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-05-04 13:58:25 +02:00
Axel Huebl
715686f0ec
WarpX: add v22.05 ( #30467 )
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Update `warpx` & `py-warpx` to the latest release, `22.05`.
2022-05-04 00:57:42 -06:00
snehring
d0fdaf6d03
igv: changing to 'all platforms' version. Adding igvtools variant. ( #30379 )
2022-05-04 08:29:06 +02:00
Adam J. Stewart
b8ebaa0813
py-shapely: add v1.8.2 ( #30466 )
2022-05-04 07:43:52 +02:00
Massimiliano Culpo
5c7d6c6e10
Remove deprecated "--run-tests" option of "spack install" ( #30461 )
2022-05-04 07:43:29 +02:00
eugeneswalker
96f9a1d88b
boost: fix v1.78 build with oneapi ( #30463 )
2022-05-03 23:29:37 -06:00
Carlos Bederián
f5eb9fb501
autodock-vina: add versions up to v1.2.3, fixes ( #30443 )
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* C++ package, use spack_cxx
* download from github, add 1.2.x versions
* remove patches already present in 1.1.2-boost-new release
* specify boost dependencies
2022-05-04 06:24:15 +02:00
Paul Ferrell
dd8f533e97
paraview: add LANL/TCE used variants for Paraview ( #30336 )
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- Added +eyedomelighting
- Added +pagosa
- Added +fortran
- Added pandas dependency and min version
2022-05-04 06:18:35 +02:00
Glenn Johnson
bab41de538
ncl: constrain hdf5 dependency to version 1.10 ( #29607 )
2022-05-03 23:11:34 -05:00
Harsh Bhatia
17c1808ef7
new package: py-pytaridx ( #30444 )
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* new package: pytaridx
* fixed copyright year
* Update git link
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* added type in python depends
* added pypi link
* Update package.py
* Update package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-05-03 23:10:49 -05:00
snehring
157ee3458f
ea-utils: new version, cleanup, and newer gcc compat ( #30204 )
2022-05-04 06:06:59 +02:00
dependabot[bot]
3ce8bff22e
build(deps): bump docker/setup-buildx-action from 1.6.0 to 1.7.0 ( #30387 )
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Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action ) from 1.6.0 to 1.7.0.
- [Release notes](https://github.com/docker/setup-buildx-action/releases )
- [Commits](94ab11c41e...f211e3e9de
2022-05-04 06:04:38 +02:00
Ethan Stam
281165693a
ParaView: let paraview build its own verdict tpl ( #30332 )
2022-05-04 06:03:52 +02:00
eugeneswalker
f8653dfb9b
mesa@22: gallium-xlib -> xlib ( #30465 )
2022-05-04 05:53:09 +02:00
Frank Willmore
a6589daa87
Vacuumms 1.1.1 ( #30458 )
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* adding updated package for vacuumms
* deprecating old version
* add link to DOI
* style: trailing whitespace
* Update var/spack/repos/builtin/packages/vacuumms/package.py
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-03 19:13:43 -06:00
Richard Berger
43a503c195
flcl: add new versions ( #30363 )
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* flcl: add new versions
* Update var/spack/repos/builtin/packages/flcl/package.py
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
* Update var/spack/repos/builtin/packages/flcl/package.py
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-03 19:01:32 -06:00
Keita Iwabuchi
1eff83990b
Metall Package: add v0.20 ( #30446 )
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* Metall package: add dependency to GCC for build test
* Package Metall: add v.017
* Package Metall: update the package file
* Update var/spack/repos/builtin/packages/metall/package.py
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
* Metall package: add v0.18 and v0.19
* Metall Package: add v0.20
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2022-05-03 16:46:04 -07:00
Lucas Frérot
17e71a675a
tamaas: new package ( #30449 )
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* tamaas: added new package
* tamaas: passing dependency prefixes to build
* tamaas: Python 3.7 dependency
* tamaas: compiler conflicts and correct ~python
* tamaas: no newline in docstring
* tamaas: correct python build dep. when ~python
2022-05-03 16:17:17 -07:00
Adam J. Stewart
872aa32a00
py-matplotlib: add v3.5.2 ( #30459 )
2022-05-03 17:06:04 -06:00
