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Author SHA1 Message Date
Gregory Becker
46ee4a3a53 Using cc -craype-verbose to get cray platform type 2016-07-18 14:25:17 -07:00
Todd Gamblin
653f25d676 Merge pull request #1171 from adamjstewart/features/octave 
Allow spack create to automatically detect octave build system
 2016-07-18 12:32:32 -07:00
Michael Kuhn
19df1ea79d flake8 fix 2016-07-18 17:53:26 +02:00
Paul Hopkins
a46138dea9 More flake8 fixes for package-list 2016-07-18 13:59:58 +01:00
Adam J. Stewart
89c9bec81e Flake8 2016-07-18 07:45:28 -05:00
Adam J. Stewart
262ab40188 Update build_system_guess test with new class name 2016-07-18 07:45:28 -05:00
Adam J. Stewart
199a8af7cc Flake8 2016-07-18 07:45:28 -05:00
Adam J. Stewart
e9f42c1a94 Allow spack create to automatically detect octave build system 2016-07-18 07:45:27 -05:00
alalazo
a96eb7096d Merge branch 'develop' of https://github.com/LLNL/spack into features/module_refresh 
Conflicts:
	share/spack/setup-env.sh
 2016-07-18 14:12:47 +02:00
Paul Hopkins
cc027148eb Flake8 fixes in cmd/package-list.py file 2016-07-18 12:52:23 +01:00
Paul Hopkins
2b3ba850b3 Fix spack package-list to correctly handle deptypes 2016-07-18 12:51:58 +01:00
Todd Gamblin
b3789a4693 Merge pull request #1269 from davydden/pkg/hypre_trilinos_blas 
Pkg/hypre trilinos blas
 2016-07-18 03:06:37 -07:00
Todd Gamblin
cddaba8add flake8 fixes. 
- package.py
- spec.py
- test/architecture.py
 2016-07-18 02:34:24 -07:00
Todd Gamblin
192369dd2b Fix #1265: Errors in spack reindex 
- Consolidated code to read spec.yaml and database index.yaml into
  one method (`read_yaml_dep_specs()`) in spec.py.

- Code understands old hash format, tuple format, and dicts for dep
  specs, for backward compatibility.

- Spec YAML now uses a dict with keys to represent dep specs (this is
  more future-proof).

- Dep specs no longer contain !!py-tuple entries in YAML (only lists
  properly YAML-ize)

- bump database version.
 2016-07-18 01:19:07 -07:00
Todd Gamblin
73f10c9363 Fix broken spack info command after build dep merge. 
- Added a method to get dependencies of particular types from Package
- Fixed info command.
 2016-07-18 01:19:07 -07:00
Todd Gamblin
cdc2ebee90 Better error messages for spack reindex. 2016-07-18 01:14:47 -07:00
Todd Gamblin
117743863e Merge pull request #1252 from hartzell/patch-5 
Fix format of explanation of an example & question
 2016-07-17 21:20:02 -07:00
Todd Gamblin
0e8bf79fa4 Merge pull request #1240 from epfl-scitas/truncated_documentation 
doc : fixes #1239
 2016-07-17 20:59:36 -07:00
alalazo
dc671ad037 docs : substituted None with empty cell 2016-07-17 22:17:52 +02:00
Denis Davydov
9ea4f80f15 flake8 fixes 2016-07-16 07:58:51 +02:00
Denis Davydov
992250ddea add to_lib_name() to get library name from a path 2016-07-16 07:24:05 +02:00
Michael Kuhn
d61190c3ff Explicitly request zmpi in module blacklist test. 2016-07-16 00:48:04 +02:00
becker33
63101e9914 Merge pull request #1261 from adamjstewart/features/create-deptype 
Automatically add deptype to newly created packages
 2016-07-15 15:10:10 -07:00
Adam J. Stewart
8c1cc44522 Automatically add deptype to newly created packages 2016-07-15 16:43:25 -05:00
becker33
e822257565 Merge pull request #1251 from hartzell/patch-4 
Minor typo fix
 2016-07-15 13:51:02 -07:00
alalazo
1f3cb2b93c Merge branch 'develop' of https://github.com/LLNL/spack into features/module_refresh 
Conflicts:
	lib/spack/spack/cmd/module.py
 2016-07-15 10:37:27 +02:00
Ben Boeckel
5d152edcaf spec: assign namespaces to the full dependency DAG 2016-07-14 16:33:48 -04:00
Ben Boeckel
faa3d43d9c package: mention the package that is no concrete 2016-07-14 16:33:38 -04:00
Ben Boeckel
45c675fe7f spack: introduce dependency types 
deptypes: allow for different queries

For things like Python modules, they are required for the build and
runtime, but rather than adding a new parameter for what to query across
the dependency DAG, just expose the recursive query parameter.
 2016-07-14 16:21:46 -04:00
Ben Boeckel
bae97d17d0 test: use file:// url for git repos 2016-07-14 16:21:45 -04:00
Ben Boeckel
6d2ec9baf7 test/stage: use os.path.realpath on the test paths 
When var/spack/stage is a symlink, the tests fail since realpath is used
on the resulting path, but not the original path, so the string compare
fails. Smarter path testing might be a better option.
 2016-07-14 16:21:45 -04:00
Ben Boeckel
b4682c8ca3 directory_layout: fix error path when specs conflict 2016-07-14 16:21:45 -04:00
Ben Boeckel
e275b567eb typos: fix some typos 2016-07-14 16:21:45 -04:00
George Hartzell
3e718920d1 Remove extraneous letter 'p' 
It got in there by mistake, now it's gone.
 2016-07-14 09:40:47 -07:00
George Hartzell
3051c3d71d Fix format of explanation of an example & question 
This list was not formatted correctly on [the ReadTheDocs site](http://software.llnl.gov/spack/basic_usage.html#specs-dependencies).

I'm not a .rst expert, but I think that it was improperly indented.

The example includes an `arch=...` string but *arch* is not listed in the valid compiler flag specifiers or architecture specifiers.  Should it be, or is it considered an "optional variant specifier?
 2016-07-14 08:31:07 -07:00
George Hartzell
e052aaf44d Minor typo fix 
the packages that depends on => the packages that depend on
 2016-07-14 08:19:32 -07:00
Michael Kuhn
5ffc50732b flake8 fixes 2016-07-13 23:05:08 +02:00
alalazo
0e2afedb7f doc : fixes #1239 2016-07-13 12:43:48 +02:00
Todd Gamblin
27aa265abd Merge pull request #1211 from hartzell/patch-3 
Typo: verison -> version
 2016-07-12 13:53:52 -07:00
Michael Kuhn
b7d9b58cc5 Fix preferred providers. 2016-07-12 19:57:08 +02:00
Todd Gamblin
283d621b6e Add documentation for fetching submodules. 2016-07-11 13:27:37 -07:00
Todd Gamblin
86b1b28906 Add submodules option for git fetching. 2016-07-11 13:27:35 -07:00
alalazo
5f861e075c Merged develop into branch 2016-07-11 20:57:55 +02:00
Todd Gamblin
7f6541ef02 Merge pull request #1190 from davydden/feature/version_dev 
add special treatment of @develop version
 2016-07-11 11:31:54 -07:00
Denis Davydov
306e601d4e document special treatment of development version 2016-07-11 19:50:33 +02:00
George Hartzell
fbaff33f3f Typo: verison -> version 2016-07-11 09:44:20 -07:00
George Hartzell
1682257b35 Typo: verison -> version 2016-07-11 09:42:49 -07:00
Denis Davydov
b29d5e6032 add special treatment of develop version 2016-07-10 14:21:52 +02:00
Todd Gamblin
b0f4052bd8 Merge pull request #1169 from davydden/feature/install_argument_tests_petsc_fixes 
--run-tests install argument and petsc fixes
 2016-07-09 12:10:16 -07:00
Todd Gamblin
c086ccdab6 Merge pull request #1200 from glennpj/lowpackname 
Have ``spack create`` default to lower case name for package
 2016-07-08 13:29:52 -07:00
Glenn Johnson
33d0660abc Have `spack create` default to lower case name 
This will create package directories with lower case names when using
`spack create`. The documentation was modified to reflect this.
 2016-07-08 15:11:37 -05:00
George Hartzell
1b9e8a0e65 Fix typo 
Comamnds -> Commands
 2016-07-08 11:01:08 -07:00
Todd Gamblin
b9148b1751 Merge pull request #1125 from NERSC/docs/cray 
Update documentation for use on Cray
 2016-07-06 15:06:20 -07:00
Gregory Becker
403a55afb2 Minor bug fix 2016-07-06 14:54:25 -07:00
Gregory Becker
663b30b3e8 Update target autodetection for linux platform 2016-07-06 14:54:22 -07:00
Denis Davydov
081918d71a add --run-tests argument for install() 2016-07-06 22:45:30 +02:00
Todd Gamblin
03fdb2058a Merge pull request #1176 from epfl-scitas/features/version_minor_improvements 
spack.Version : like a duck!
 2016-07-06 09:01:19 -07:00
alalazo
9b926a480f qa : flake8 issues 2016-07-06 17:03:32 +02:00
alalazo
780a57367d version : modified __getitem__ to return either an item or a Version instance + unit tests 2016-07-06 17:00:48 +02:00
alalazo
32e086f44a version : modified __repr__ to return a string representation of the object + unit tests 2016-07-06 15:24:10 +02:00
William Killian
1f64f08cb3 (bugfix) fixed typo of spec --> raw_spec 2016-07-05 13:32:37 -07:00
Todd Gamblin
d687e332ad Fix compile bugs for gcc on Mac OS X with macports. 
- add macports to things that are cleaned out of the environment.
- linker incompatibilities cause issues with packages like OpenSSL.
- also clean up NOQA stuff in OpenSSL
 2016-07-04 22:59:02 -07:00
Todd Gamblin
690937f953 Add --dirty option to spack install. 
- Allow install to be run without cleaning the environment.
 2016-07-04 22:58:01 -07:00
Todd Gamblin
6bac1598f6 Merge branch 'fix-archive' of https://github.com/mwilliammyers/spack into mwilliammyers-fix-archive 2016-07-04 21:35:33 -07:00
Todd Gamblin
890df7153a Merge branch 'efischer/160311-StagedPackage' of https://github.com/citibeth/spack into citibeth-efischer/160311-StagedPackage 2016-07-04 00:27:32 -07:00
alalazo
6d988dde8d qa : fixed flake8 issues 2016-07-02 12:54:36 +02:00
alalazo
3100c5948a module : added unit tests 2016-07-02 12:14:30 +02:00
Glenn Johnson
31e9ded768 Remove more variables from build environment 
Remove the LIBRARY_PATH and CPATH environment variables before building
a package.
 2016-07-01 20:59:14 -05:00
alalazo
d10fceaacc spack commands : refactoring of cli arguments and common utiities. Implemented suggestions on spack module loads 
- Common cli arguments now are in their own module
 - Moved utilities that can be reused by different commands into spack.cmd.__init__.py
 - Modifications to `spack module loads`
 2016-07-01 23:06:07 +02:00
alalazo
f0f7b23c8a module : added rm subcommand, encapsulated logic for constraints in argarse.Action subclass 2016-07-01 14:27:55 +02:00
alalazo
fe4ef286f2 module : added the command 'load-list' 2016-07-01 12:38:04 +02:00
Mario Melara
56adb5d9a5 Change arch spec and fix typo 
Changed old arch specs to new arch specs. Changed intallation to
installation
 2016-06-30 17:03:07 -07:00
Mario Melara
16a4c49f98 Remove Cray examples of config files 
Removed examples of Cray config files and added them under Spack on
Cray. Any users of Cray can just look at the Spack on Cray section to
get an idea of what's used. If they want more information they can click
links to the sections.
 2016-06-30 17:01:18 -07:00
Mario Melara
d784d561fc Add more documentation fix arch spec 
Added more documentation for Spack on Cray. Also fixed the architecture
spec to be linux-debian7-x86_64 since it was reversed in the previous
commit.
 2016-06-30 16:59:36 -07:00
Massimiliano Culpo
6793a54748 --prefix : defaults to empty string 2016-06-30 23:18:32 +02:00
Massimiliano Culpo
ba1ada5424 Merge branch 'develop' of https://github.com/LLNL/spack into features/module_refresh_reworking 
Conflicts:
	lib/spack/spack/cmd/module.py
 2016-06-30 22:19:46 +02:00
alalazo
a770151359 module : minor improvement to output formatting 2016-06-30 16:49:24 +02:00
Elizabeth Fischer
6327877a6f PEP-8 2016-06-30 09:19:57 -04:00
Elizabeth Fischer
50ac98bc04 Merge remote-tracking branch 'upstream/develop' into efischer/160630-StagedPackage 
# Conflicts:
#	lib/spack/docs/packaging_guide.rst
#	lib/spack/spack/package.py

Mostly minor/formatting issues in lib/spack/spack/package.py (the heavyweight merge was already done recently).  Only one serious issue: it looks like the feature branch had accidentally deleted the line `spack.hooks.post_install(self)`.  This got added back in from develop.
 2016-06-30 09:13:24 -04:00
alalazo
ba87937fff module : added detection of file name clashes 2016-06-30 13:44:49 +02:00
alalazo
1b7eedbb7d modules.yaml : added hash_length as a new keyword 
config :
- added `hash_length` under the modules section

EnvModules :
- take into consideration hash_length when constructing `file_name`
- added logic to warn and skip module file writing in case of file name clash
 2016-06-30 12:56:47 +02:00
Todd Gamblin
0e422dec8c Merge pull request #1141 from adamjstewart/fixes/license_docs 
Fix missing code blocks in licensed software documentation
 2016-06-30 02:22:38 -07:00
Todd Gamblin
bc2fa76588 Merge pull request #1146 from scheibelp/features/doc-caching 
added documentation for automatic caching of resources fetched during installs
 2016-06-30 02:13:16 -07:00
Todd Gamblin
30d083c6b7 Merge branch 'efischer/160401-RecursiveModules' of https://github.com/citibeth/spack into citibeth-efischer/160401-RecursiveModules 2016-06-30 02:12:00 -07:00
Peter Scheibel
cfd380d514 added documentation for automatic caching of resources fetched during installs 2016-06-29 18:23:40 -07:00
Ben Boeckel
5f720f9b7c flake8: appease the style checker 2016-06-29 14:49:58 -04:00
Ben Boeckel
e3e94f0ac9 bootstrap: name the current branch the same as the remote 2016-06-29 14:49:19 -04:00
Ben Boeckel
89bf5f4045 bootstrap: allow using alternate remotes 
If you want to bootstrap from a fork, the `--remote` option may be used
to select it.

Also limit the branches to 'develop' and 'master' if the remote is
'origin' since those are the actual integration branches used (other
branches on 'origin' are just PR branches).
 2016-06-29 14:49:19 -04:00
Ben Boeckel
7ec191ce0b bootstrap: use the currently checked out branch 
The `master` branch is not really where Spack development happens, so
default to it, but use the user's current branch if it's there.
 2016-06-29 14:49:19 -04:00
Ben Boeckel
6f69c01915 bootstrap: fall back to the default upstream URL 
Fixes #352.
 2016-06-29 14:49:19 -04:00
Adam J. Stewart
06de8c56af Fix missing code blocks in licensed software documentation 2016-06-29 12:35:38 -05:00
Todd Gamblin
eb388306fd Merge pull request #1112 from adamjstewart/features/dependencies 
Make spack create automatically add dependencies for build system
 2016-06-29 07:57:33 -07:00
Todd Gamblin
c996632113 Add spack purge --cache to purge local archive cache. 2016-06-29 01:41:55 -07:00
Todd Gamblin
bc1320d83a Merge branch 'features/cache-archives' of https://github.com/scheibelp/spack into scheibelp-features/cache-archives 2016-06-29 00:57:26 -07:00
alalazo
b71d430af6 module : can regenerate single module files, homogenized cli options 
spack module :
- refresh accepts a constraint
- find and refresh share common cli options
- ask for confirmation before refreshing
- deleting the module file tree is now optional
 2016-06-28 19:28:18 +02:00
mwilliammyers
0384794912 Fix #1019 - cannot create mirror for git spec 2016-06-27 16:00:38 -06:00
Mario Melara
26325fe812 Add missing link to external packages 
Adding missing _sec-external_packages to link with external packages
page
 2016-06-27 14:35:56 -07:00
Mario Melara
7fb45e4bfd Update documentation for use on Cray 
Updating how to use compilers.yaml on Cray as well as setting up
external packages. Also includes what needs to be set up for usage on
Cray and explains what needs to be done to get Spack properly working.
Also explain the architecture spec and what it does.
 2016-06-27 13:52:48 -07:00
Todd Gamblin
3ea9d1e665 Merge pull request #1122 from LLNL/bugfix/newarch-sys_type 
Bugfix/newarch sys type
 2016-06-27 10:07:03 -07:00
Adam J. Stewart
798dabc8f2 Forgot the unknown key/value pair 2016-06-27 09:01:53 -05:00
Todd Gamblin
0185226042 Merge pull request #1121 from LLNL/bugfix/module-directory-pollution 
Make MockPackagesTest use a different module location.
 2016-06-27 02:25:32 -07:00
Todd Gamblin
99c3ed56fa Add new sys_type method that prints out the *full* arch descriptor. 2016-06-27 02:19:26 -07:00
Todd Gamblin
305d5698df Rename spack.architecture.sys_type() to spack.architecture.platform() 2016-06-27 02:19:08 -07:00
Todd Gamblin
a15aee5d8e Make MockPackagesTest use a different module location. 
- ensures anything tests create is blown away.
 2016-06-27 01:22:03 -07:00
Todd Gamblin
b4c36164b5 Fixes #760: spack test leaves builtin.mock packages in DB 
- install_layout was redirected by the install test, but not the DB.
- redirect the DB now, as well.
 2016-06-27 00:55:16 -07:00
Todd Gamblin
73213ac59d Merge pull request #984 from epfl-scitas/module_file_explicit_load 
module files : explicit load and mnemonic suffixes
 2016-06-26 23:33:48 -07:00
Todd Gamblin
19b69ce3a5 Merge pull request #1097 from citibeth/efischer/160622-DBErrors 
Improved Spack database errors to help users fix them.
 2016-06-26 22:45:44 -07:00
Todd Gamblin
ece72e5337 Merge pull request #1030 from opoplawski/external 
Remove last two remaining from external imports
 2016-06-26 22:41:58 -07:00
Todd Gamblin
8f28df1d14 Merge pull request #1094 from epfl-scitas/documentation/remove_packages_yaml_inconsistencies 
packages.yaml : removed references to a never implemented feature
 2016-06-26 22:37:43 -07:00
Todd Gamblin
30993357d7 Merge pull request #1105 from adamjstewart/fixes/filter_file 
Fix backup logic in filter_file
 2016-06-26 22:33:09 -07:00
Adam J. Stewart
ea88d9cfe9 Make spack create automatically add dependencies for build system 2016-06-24 16:43:31 -05:00
Todd Gamblin
055f7f4ab6 Add package_dir method to package.py. 2016-06-24 12:33:53 -07:00
Adam J. Stewart
71a297f121 Fix backup logic in filter_file 2016-06-23 16:44:41 -05:00
Todd Gamblin
27e9bc6d02 Make sbang handle lua 
- use --! instead of #! for patched lua scripts.
 2016-06-23 00:03:23 -07:00
Elizabeth Fischer
8f846d507d Added --prefix to module command. 2016-06-22 15:36:04 -04:00
Elizabeth Fischer
10810482bc Update database.py 
PEP8
 2016-06-22 14:03:32 -04:00
Elizabeth Fischer
ffe9e77e36 Improved Spack database errors to help users fix them. 2016-06-22 12:11:09 -04:00
Robert.French
ff3e56cf9a Import which from spack.util.executable; Fixes #1095 2016-06-22 15:25:32 +00:00
alalazo
f29b55957a documentation : removed references to never implemented features 2016-06-22 17:08:02 +02:00
Todd Gamblin
58cff1290d Make environment test less sensitive to user config files. 2016-06-21 00:19:28 -07:00
Todd Gamblin
0521b9bb32 Fix merge error. 2016-06-21 00:08:12 -07:00
Todd Gamblin
f18e1a9371 Merge branch 'features/cantera' of https://github.com/adamjstewart/spack into adamjstewart-features/cantera 2016-06-20 23:53:48 -07:00
Todd Gamblin
3f90fee614 Merge pull request #1085 from NERSC/bugfix/compiler_find 
Bugfix/compiler find and gfortran fix.
 2016-06-20 23:46:13 -07:00
Todd Gamblin
70a25c4587 Change --insensitive to --sensitive in spack list 2016-06-20 17:17:25 -07:00
Todd Gamblin
cbd5a0a6e3 Merge branch 'list-ext' of https://github.com/trws/spack into trws-list-ext 2016-06-20 17:13:32 -07:00
Todd Gamblin
db81a74d66 Merge pull request #939 from davydden/docs/blas_lapack 
document blas and lapack usage in packages
 2016-06-20 17:11:09 -07:00
Todd Gamblin
a3431c5a73 Merge pull request #1047 from epfl-scitas/source_diffs_in_environment_modifications 
feature : construct environment modifications sourcing files
 2016-06-20 16:56:30 -07:00
Mario Melara
d515877d91 Add init_config args in compilers/__init__ 2016-06-20 16:20:52 -07:00
Mario Melara
4c4f3e9747 Add init_config to compiler_find method 2016-06-20 16:20:33 -07:00
alalazo
5aa3131385 qa : fixed flake8 issues 2016-06-20 21:11:33 +02:00
alalazo
b86e3047f3 openmpi : revert part of #1079 (OpenMPI can be built without fortran) 
Building OpenMPI without fortran is possible, and was already handled.
 Raising an install error we effectively renounce at clang+OpenMPI.

 build_environment : sets 'CC', 'CXX', and similar variables only if a compiler is found
 2016-06-20 20:46:11 +02:00
Tom Scogland
45482187b4 one more typo issue 2016-06-20 11:42:35 -07:00
Tom Scogland
f6aa864bc4 adding quotes to make sure the glob is interpreted correctly 2016-06-20 11:41:36 -07:00
Tom Scogland
ac728d3e60 fixing capitol->capital typos 2016-06-20 11:38:39 -07:00
Tom Scogland
6180e6c047 automatic case-insensitive like smartsearch, docs 
New documentation for the new options, also case insensitive by default
unless the user includes an upper-case character in their pattern.
 2016-06-20 11:33:56 -07:00
Mario Melara
6fb7b0fcf7 Merge branch 'develop' of https://github.com/LLNL/spack into bugfix/compiler_find 
Forgot to pull branch changes before
 2016-06-20 10:59:28 -07:00
Mario Melara
88888f5ba0 Got rid of unnecessary module arg 2016-06-20 10:58:20 -07:00
Mario Melara
1303b5a6a9 Adding more init_config as args to all_compilers,all_compilers_config, and get_compiler_config 2016-06-20 10:57:58 -07:00
Mario Melara
fe30113502 Adding init_config back. Don't initalize config rather let compiler_find do all the work. spack compiler list and spack compilers can do the work 2016-06-20 10:57:10 -07:00
Tom Scogland
0377f3580b switching argument naming 2016-06-20 10:53:19 -07:00
Adam J. Stewart
aa86488fd9 Flake8 2016-06-20 12:47:17 -05:00
Todd Gamblin
42ff1aaa75 Merge pull request #1064 from LLNL/bugfix/github-1043-script-backup 
do not create shebang.bak file
 2016-06-20 10:45:42 -07:00
Todd Gamblin
c09111bbef Merge pull request #1053 from davydden/pkg/dealii_suite_update 
update Petsc, Slepc, Trilinos, Superlu-dist and deal.II
 2016-06-20 10:32:52 -07:00
Adam J. Stewart
be407f531e Move around extension logic 2016-06-20 12:24:45 -05:00
Adam J. Stewart
28b2e36230 Add ctest executable 2016-06-20 12:24:45 -05:00
Adam J. Stewart
afff40e584 Flake8 fix for R templates 2016-06-20 12:24:45 -05:00
Adam J. Stewart
5dfc2052bd Flake8 change 2016-06-20 12:24:45 -05:00
Adam J. Stewart
98d03c74e1 Add support for less common compression schemes 2016-06-20 12:24:45 -05:00
Adam J. Stewart
5a55bb3f8d Modify R installation template 2016-06-20 12:24:45 -05:00
Adam J. Stewart
79fae306f6 Add extensions for Python/R and more configurable install 2016-06-20 12:24:45 -05:00