* Add versions 5.2.0 and 5.1.0
* Avoid adding version 6.0.0: this version has a new API that is
not compatible with older versions (and dependents may break with
it)
* Added comment block explaining the problems with version 6.x
* Replace old datumgrid resource (1.7) with new (1.8)
* Add speculative sqlite dependency for when a 6.x version is added
* add version 7.0.1
* replace md5 with sha256 for various versions.
* v7.0.1 fixes some environment hacking to properly find MPI and
system architecture
This adds a stub script for mpirun and other standard executables
when installing OpenMPI with slurm. The purpose is to make the
removal less of a surprise to administrators/users: it explains why
they were removed and how to restore them.
* adding package to install squashfs for singularity
* dont need os import
Signed-off-by: Vanessa Sochat <vsochat@stanford.edu>
* updating md5 to sha1 for squashfs package
Signed-off-by: Vanessa Sochat <vsochat@stanford.edu>
* two blank lines
Signed-off-by: Vanessa Sochat <vsochat@stanford.edu>
* Newer versions of IBM XL no longer define `__xlC__`, but define `__ibmxl__`
instead. This one-line patch fixes this problem in Random123.
* This patch was also provided to the Random123 maintiners
(Random123@DEShawResearch.com). I don't expect a new release from them for a
while, so I believe that this patch is the correct path forward (for now).
* initial work to make use of an 'upstream' spack installation: this uses the DB of the upstream installation to check if a package is installed
* need to query upstream dbs when adding new record to local db
* prevent reindexing upstream DBs
* set prefix on specs read from DB based on path stored in install record
* check that Spack does not install packages that are recorded as installed in an upstream db
* externals do not add their path to install records - need to use 'external_path' to get path of upstream externals
* views need to check for upstream installations when linking metadata
* package and spec now calculate upstream installation properties on-demand themselves rather than depending on concretization to set these properties up-front. The added tests for upstream installations don't work with this new strategy so they need to be updated
* only refresh modules for local specs (not those in upstream packages); optionally generate local module files for packages installed upstream
* when a user tries to locate a module file for a package installed upstream, tell them to use the upstream spack instance to locate it
* support recursive upstream databases (allow upstream databases to use their own upstream databases)
* separate upstream config into separate file with its own schema; each entry now also includes a name
* metadata_dir is no longer customizable on a per-instance basis for YamlDirectoryLayout
* treat metadata_dir as an instance variable but dont set it from kwargs; this follows several other hardcoded variables which must be consistent between upstream and downstream DBs. Also update DirectoryLayout.metadata_path to work entirely with Spec.prefix, since Spec.prefix is set from the DB when available (so metadata_path was duplicating that logic)
* Add latest libyogrt versions
* Add url_for_version to handle differing url formats for different
versions
* Add 'scheduler' variant to configure scheduler. Currently only
slurm can be installed with Spack. A value of 'system' indicates
to use the scheduler installed on the system
* py-prompt-toolkit: Add newer version for required for newer
py-ipython versions
* py-ipykernel:
* Add newer py-ipykernel version
* Depend on py-setuptools so a python egg isn't attempted to be
built
* Update dependency for newer py-ipykernel versions
* py-jupyter-console: Remove py-prompt-toolkit dependency since it is
picked up in py-ipython
* py-ipython:
* Add missing py-backcall dependency
* Adjust py-prompt-toolkit dependencies for newer versions of
ipython
* py-jupyter-notebook: Require newer version of py-ipykernel since
jupyter is broken with previous versions
* add cxxstd variant
* add CMake constraints based on platform/version
* add older versions
* update boost dependency version constraints (which are closely
tied to mysql version) and update boost cxxstd choice to be
the same as the cxxstd chosen for mysql
* add client-only support (including a patch for 5.5.x)
* record the mysql package as a provider of the mysql-client virtual
Improve management of the Fiber library and C++ standard support:
* Remove Fiber from list of libraries to build
* Improve variant management for Fiber; add variants for Context and
Coroutine libraries.
* Add known conflict with C++17 for boost < 1.63.0
* Remove C++ standard "default" option, which left the choice of
C++ standard to the compiler used to build boost
* record conflicts with compiler versions which don't provide
required c++ standard support
* add doxygen (build) dependency
* add note that range-v3 is header-only as of 0.3.6 and update
package description
We add new variants to handle readline vs libedit, a client-only
build and install, and bindings to TCL, Python and Perl. We also add
new versions and the ability to detect remote versions not otherwise
dealt with.
This avoids using a system-installed CUDA package. In the future a
variant can be added to allow using Spack-installed CUDA, but for
now CUDA support is always disabled.
* abinit: Fix building with hdf5/netcdf.
* gromacs: Fix attempt to build with cuda support when 'cuda=False'
If for some reason there's a cuda toolkit installed by other means,
(i.e. not by spack) cmake will still try to build with cuda support,
even though 'cuda=False' is the default of the spec.
* Revert "abinit: Fix building with hdf5/netcdf."
This reverts commit e16f725e37b91193fe519b1821446c76ab551928.
This should not be here.
* Draco: add variants
+ This package has many optional build dependencies that were not registered in
older versions of this recipe. I've added (and tested) this more complete
list of optional dependencies: parmetis, superlu-dist, qt.
* fix style issues
* hpcviewer: new package
Add binary package for hpcviewer and hpctraceviewer for the Rice
hpctoolkit on Linux x86_64, ppc64 and ppc64le.
* ibm-java: add property 'home' so that spec['java'].home will work.
* Flake
* More flake.
* Test that the version, machine type pair exists before using it in the
sha dictionaries so that 'spack info' doesn't crash on unsupported
configurations.
* mariadb-c-client is a new package using the distinct, LGPL,
MySQL-compatible client library from mariadb.com. It provides the
virtual package mariadb-client
* mariadb is recorded as a provider of the mariadb-client virtual
* The mysql-client virtual package is also added, and mariadb-c-client
is recorded as a provider for it
* Throw InstallError if more than one GPU architecture is passed to cuda_arch. Previous cuda_arch test was not actually working because comparison with none string was on the cuda_arch list instead of the first entry of the list.
* Removing redundant cuda_arch statement.
* New package: py-mysql-connector
* Fixed docstring
* 1. Determined that py-setuptools was not needed at all, so removed.
2. Added py-protobuf. Docs seem to imply that only C protobuf library is required; however, the Python setup.py says differently, and some Python code seems to reference protobuf too. I don't know why this worked for me, but it looks like including py-protobuf is the right thing to do.
* Applied solution detailed in:
https://github.com/mysql/mysql-connector-python/pull/9
Uncommenting this patch will make `error: option --single-version-externally-managed not recognized` reappear.
* Clean up / reorder lines
* flake8
qt currently falls back to bundled versions of sqlite, harfbuzz, pcre,
double-conversion and xcb. This adds the appropriate dependencies and
configure arguments. A new variant adds multibyte support to pcre and
pcre2, which is required by qt.
Additionally, newer versions of gcc (starting with @8.3.0) cause build
failures. This adds a patch to fix the problem.
The changes have been tested with all versions of qt currently available
in Spack. 5.2 and 5.3 do not build for reasons that seem to be unrelated
to these changes, though.
* Add binary package of the IBM Java SDK for big and little-endian
powerpc (power7, 8 and 9). The jdk and openjdk packages only install
on x86_64.
* Add ibm-java as a java provider
* The jdk and openjdk packages only install on x86_64. Add conflicts
for ppc64 and ppc64le to jdk and openjdk.
shmemrun and oshrun do not exist in OpenMPI v4.0.0
(ref: https://www.open-mpi.org/doc/v4.0/)
The Spack OpenMPI package was failing the install by trying to
remove them. This guards the removal of several scripts when
using the Slurm scheduler to handle the case where they don't exist.
It seems that this is actually a glibc problem and while 2.6.4 builds
without the patch on newer versions of gcc (@8:), it still sometimes
segfaults (as observed during the doxygen build).
* Add 'fiber' as a default library for boost
* Add autoconf/automake etc. dependencies to libseccomp package
* New package: brotli
* New package: editline
* Add brotli, editline, boost dependencies to Nix
Remove 2.6.3 as preferred version (but keep it available for
building). The latest version (currently 2.6.4) is now preferred
(according to Spack's defaults).
* Update dependencies for py-flake8 when building version 3.7.7
* Add FIXME comment for an example dependency constraint which causes
concretization to hang
* Add py-entrypoints version 0.3
* Add py-pycodestyle version 2.5.0
* Add libuv version 1.10.0
* CMake versions before 3.12.0 do not build with libuv version
1.25.0, so a constraint is added to build earlier versions of
CMake with libuv version 1.10.x
Update CPATH in setup_environment for Eigen, so that the
Spack-generated module for Eigen will help builds outside of Spack
use the appropriate include prefix for Eigen headers
(<install_prefix>/include/eigen3/ rather than <install_prefix>/include/)
Note that this only updates the run-time environment, rather than the
build-time environment, so Spack builds depending on Eigen that use
pkgconfig will not be confused by the presence of the Eigen include
directory in CPATH.
* Replace kim-api package with kim-api-v2, which has different
versions and removes the 'cmake_args' method
* Add openkim-models-v2 as an extension package
* libelf: move url to fossies.org
Libelf is no longer maintained and the original mr511.de web site no
longer exists. The final release, 0.8.13 from Nov 2009 is still
archived at fossies.org.
Fixes#10757.
* Change the homepage to the FSF entry.
New release of UnifyCR. Remove unsupported pre-1.0 versions
UnifyCR has had a few dependency changes to make the backend more
efficient. A new pre-release version has been released as well to
mark these changes. Prior versions are no longer supported.
Fixes#10769
This updates the .headers property to include header subdirectories
for Python and Eigen (as is recommended by these packages).
#10623 updated the default behavior of .headers.directories to
exclude subdirectories (since this can cause clashes with system
headers). This broke some packages which depended on the old behavior
of .headers.directories: for example if you had
<package-prefix>/include/subdir/ex1.h, .headers.directories would
include <package-prefix>/include/subdir.
The environment modules package has been updated to include
versions up to 4.0.0. The url of the package and the homepage
have been updated accordingly.
The `spack bootstrap` command now builds version 3.2.10 of
the environment-modules package, and will do until #10708
is fixed.
* Make use of new QE multi-valued HDF5 variant interface
* Remove explicit CUDA dependency (which is handled by inheriting
from CudaPackage)
* Update cuda_arch unset variant check
libbeagle compiles against CUDA by default but no there is no mention
of it in the package recipe. This PR adds explicit cuda paths and
variants, and fixes the target architecture as well (for those who
don't have compute_13)
Serial HDF5 in serial QE only works in develop version. This adds
a conflict to the QE package to prevent Spack from trying to build
specs which don't satisfy this constraint.
This restores the use of Package.headers when computing -I options
for building a package that was added in #8136 and reverted in
#10604. #8136 used utility logic that located all header files in
an installation prefix, and calculated the -I options as the
immediate roots containing those header files.
In some cases, for a package containing a directory structure like
prefix/
include/
ex1.h
subdir/
ex2.h
dependents may expect to include ex2.h relative to 'include', and
adding 'prefix/include/subdir' as a -I was causing errors,
in particular if ex2.h has the same name as a system header.
This updates header utility logic to by default return the base
"include" directory when it exists, rather than subdirectories.
It also makes it possible for package implementers to override
Package.headers to return the subdirectory when it is required
(for example with libxml2).
Update older md5 checksums to sha256. Require CMake >= 3.6.0 (updated
from 3.5.0). Remove some third-party depends_on statements (which
were commented out before).
Extract implicit xenv dependency into a new package and add it as an
explicit dependency. Update Gaudi to explicitly depend on older
versions of xenv rather than the latest develop because that
conflicts with Spack's compiler wrappers.
The nvptx installation support phase (added in 040b658) was always
running for gcc regardless of whether +nvptx was enabled. This
removes the "@when" syntax (which apparently is not working) and
adds a check inside of the "nvptx_install" function to bail out if
+nvptx is not enabled.
On macOS, the build of libxxhash is performed by a bare `make`
launched by `MakePackage`s default `build` phase. As `prefix`
is not set at this point, the library gets compiled with a hard-coded
install name of `/usr/local/libxxhash.dylib`. Downstream clients,
in the tested case Root, will then fail to build as the install name
is incorrect.
Move setting of `prefix` from `install` to `edit` so that it
propagates to subsequent `build` and `install` phases.
* QE hdf5 is now a multi-valued variant. Update conflicts accordingly.
* Update dependencies for hdf5 multi-valued variant. Bug fix: high-level hdf5 library needs to be a hard dependecy.
* Support for HDF5 serial interface. Note that this is not supported in QE autoconf, but will be fixed in the next official release.
* Support in QMCPACK for CUDA_ARCH flag.
* No need to have explicit CUDA variant anymore.
* Internal QMCPACK CMake assumes a minimum GPU architecture if none is provided.
* cp2k: archive the Makefile after a successful installation
* cp2k: all checksums are now sha256
* libint: all checksums are now sha256 + added versions 2.4.X
* libxc: all checksums are now sha256 + added version 4.3.2
* cp2k: os.path.join instead of join_path + simplified openmp flags
* cp2k: turned into a MakefilePackage
* cp2k: refactored edit method so that Makefile writing happens last
