Commit graph

18605 commits

Author SHA1 Message Date
Joseph Ciurej
0095c4c25c
python: fix distutils for python modules (e.g. matplotlib) with C and C++ source files (#16856)
* python: adding a distutils fix to improve build compatibility for C++ extension modules (e.g. py-matplotlib)

* python: added C/C++ distutils patches for python@3.6:3.8
2020-06-16 12:45:36 -05:00
Tomoki, Karatsu
4b48f70393
gobject-introspection: build sequentially when using the Fujitsu compiler. (#17092) 2020-06-16 14:51:29 +02:00
victorusu
0f484380f5
reframe: fix package bugs with v3.0 (#17104)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-16 13:49:47 +02:00
vvolkl
e28561241b
ROOT: set LD_LIBRARY_PATH when ~rpath (#16899)
Allow Spack to build with ROOT as an external dependency by setting
LD_LIBRARY_PATH: given that the external package was not built by
Spack, dependents would not be able to locate libraries using RPATHs
when running ROOT binaries.
2020-06-15 23:31:41 -07:00
darmac
9f73e60ba9
Add new package: lzop (#17098) 2020-06-16 08:28:44 +02:00
John Jolly
8882dc0d96 chill: Update dependency versions
Specified Python to be v2.7 only, as Python3 support is not currently
implemented in chill.

Update chill dependency versions for the following libraries to the
specific versions:

* rose:  v0.9.13.0
* bison: v3.4.2

Both rose and iegenlib are build time dependencies, but are also run
time dependencies. Added 'run' to the build type for both dependencies.
2020-06-15 23:08:34 -07:00
Sergey Kosukhin
a492187973
hdf5: fix libtool files (#17009) 2020-06-15 23:05:46 -07:00
Andrew W Elble
7e322b3184
CUDA: remove preexisting log file before install (#17018)
cuda: 10.1 and onward, installers will crash if /tmp/cuda-installer.log
exists

Try to help if user owns the file, otherwise try to provide useful
info. Clean up the file post-install to try to avoid the whole issue.
2020-06-15 22:57:00 -07:00
Jen Herting
d4f0a8f70b
[py-torchvision] added dependency of ffmpeg (#17032)
* [py-torchvision] added dependency of ffmpeg

* [py-torchvision] needs ffmpeg >= 3.1. See: https://github.com/pytorch/vision/issues/1597

* [py-torchvision] ffmpeg dependency is only for py-torchvision versions >= 0.4.2.
2020-06-15 22:46:35 -07:00
Amjad Kotobi
0111f2932f
pcre2: add version 10.35; JIT support (#17037) 2020-06-15 22:44:04 -07:00
Jose E. Roman
f54c9ae305
SLEPc: added v3.13.3 (#17085) 2020-06-16 06:25:30 +02:00
Kai Torben Ohlhus
e8fc7871da
openblas: added v0.3.10. (#17086)
[OpenBLAS 0.3.10](https://github.com/xianyi/OpenBLAS/releases/tag/v0.3.10) was released.
2020-06-16 06:22:48 +02:00
Sinan
06c06a5665
arrayfire: added new package at v3.7.0 (#15598)
Co-authored-by: Sinan81 <Sinan81@github>
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-06-16 06:15:50 +02:00
darmac
6f07f8ae3e
netdata: added new package at v1.22.1 (#17094) 2020-06-16 06:08:45 +02:00
darmac
d1aa54115c
cyrus-sasl: added new package at 2.1.27 (#17096) 2020-06-16 06:00:53 +02:00
darmac
70be1038fd
memtester: added new package at v4.3.0 (#17097) 2020-06-16 05:59:31 +02:00
Miroslav Stoyanov
32558525f6
heffte: added v1.0 (#17102) 2020-06-16 05:44:47 +02:00
David Beckingsale
cb028aaf12
Update master to main for RAJA and Umpire (#17107) 2020-06-16 05:35:23 +02:00
h-denpo
01d9063bb1
ffb: prevent the architecture to be always "x86_64" (#17093) 2020-06-16 05:29:35 +02:00
Todd Gamblin
e5066664ab
README: Update LLNL release number to Apache-2.0/MIT version (#17109)
The release number in the README had not been updated since we did the
relicense to Apache-2.0 OR MIT in v0.12.0. LLNL-CODE-811652 is Spack's
new LLNL release number.
2020-06-15 17:10:49 -07:00
Matthias Diener
24ff34335b
dateutils: add version 0.4.7 (#17106) 2020-06-15 22:50:56 +02:00
Itaru Kitayama
eb26b4666f
Add 4.5 release to cubelib (#17090) 2020-06-15 15:21:35 -05:00
Massimiliano Culpo
5fc88a7c65
Skip failing test on MacOS (#17072)
* Skip failing test on MacOS

* Update setup-python action and unpin coverage
2020-06-15 13:24:56 -05:00
darmac
6c2e14dfca
grafana: added new package at v6.7.3 (#16788) 2020-06-15 15:56:29 +02:00
Sinan
1501de59ed
Package/py-lmfit: add new version (#16975)
* save edits

* tidy up

* Update var/spack/repos/builtin/packages/py-lmfit/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* add python version constraints

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Sinan81 <Sinan81@github>
2020-06-14 08:36:10 -05:00
Mark W. Krentel
aa50c2c7d0
hpctoolkit: add version 2020.06.12 (#17081)
Add versions 2020.06.12 and develop.
Switch default for variant papi to true.
2020-06-13 09:01:42 -05:00
Sinan
59e4caad1d
add dependency for icd variant, or else build fails (#17079)
Co-authored-by: Sinan81 <Sinan81@github>
2020-06-13 09:00:46 -05:00
Greg Becker
58332d028e
clang: add 'version_argument', remove redundant method (#17071) 2020-06-13 15:31:24 +02:00
Sinan
b9cf50d571
New package: ocl-icd (#17078)
* new package: ocl-icd

* flake8

Co-authored-by: Sinan81 <Sinan81@github>
2020-06-12 21:23:55 -05:00
victorusu
82f84fb61b
Reframe 3.0 (#17005)
* Add pygelf Python package

* Update ReFrame package version

* Address styling remarks

* Update var/spack/repos/builtin/packages/reframe/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/reframe/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/reframe/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/reframe/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/reframe/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Address PR remarks

* Remove setuptools runtime dependency

* Address PR remarks

* Address PR remarks

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-12 20:38:17 -05:00
健美猞猁
50a50875f9
py-healpy: a new package. (#17001)
* py-healpy: a new package.

* Use internal libraries within py-healpy.

* Fix python dependencies.

* Fix python dependency.
2020-06-12 20:36:24 -05:00
Ross Miller
a69a213b9b
New recipe for building the Log4C package (#17038)
* New recipe for building the Log4C package

* Update Copyright notice
2020-06-12 20:19:28 -05:00
darmac
4053036388
fix depends issue and support for aarch64 (#17045) 2020-06-12 20:18:38 -05:00
Peter Scheibel
2b58b3a1bf
replace 'no' with 'none' as possible value of 'threads' variant (#17063) 2020-06-12 20:12:35 -05:00
Amjad Kotobi
416e94be72
xrootd: new versions (#17076) 2020-06-12 20:06:15 -05:00
Greg Becker
ea8a0be465
add compilers to mpi setup_run_environment methods forall mpi implementations (#17015) 2020-06-12 14:05:12 -07:00
Andrew W Elble
67b86623a2
bazel: patch to allow py-tensorflow (and likely other bazel packages) to build. (#17013)
bazel uses gcc's -MF option to write dependencies to a
file. Post-compilation, bazel reads this file and makes some
determinations.

"Since gcc is given only relative paths on the command line,
 non-system include paths here should never be absolute. If they
 are, it's probably due to a non-hermetic #include, & we should stop
 the build with an error."

Spack directly injects absolute paths, which appear in this file and
cause bazel to fail the build despite the fact that compilation
succeeded.

This patch disables this failure mode by default, and allows for it
to be turned back on by using the '~nodepfail' variant.
2020-06-12 13:25:34 -07:00
h-denpo
0c1f1af571
New package: FrontFlow Blue (#16901)
* New package: FrontFlow Blue
       Computational Fluid Dynamics Software for aeroacoustics

* Modify Package ->MakefilePackage

* Update var/spack/repos/builtin/packages/ffb/package.py

Co-authored-by: Greg Becker <becker33@llnl.gov>

* Update var/spack/repos/builtin/packages/ffb/package.py

Co-authored-by: Greg Becker <becker33@llnl.gov>

Co-authored-by: Greg Becker <becker33@llnl.gov>
2020-06-12 12:31:04 -07:00
John Jolly
b90780d256 cscope: Link tinfow instead of tinfo
Whenever attempting to use any ncurses functionality within cscope, a
page fault would result within the ncurses library.

    Program received signal SIGSEGV, Segmentation fault.
    0x00007ffff7fad3cf in termattrs_sp () from .../lib/libncursesw.so.6
    (gdb) bt
    #0  0x00007ffff7fad3cf in termattrs_sp () from .../lib/libncursesw.so.6
    #1  0x00007ffff7faa794 in _nc_setupscreen_sp () from .../lib/libncursesw.so.6
    #2  0x00007ffff7fa614c in newterm_sp () from .../lib/libncursesw.so.6
    #3  0x00007ffff7fa65b9 in newterm () from .../lib/libncursesw.so.6
    #4  0x00007ffff7fa2970 in initscr () from .../lib/libncursesw.so.6
    #5  0x0000000000403dc2 in main (argc=<optimized out>, argv=0x7fffffffcea8) at main.c:574

This is due to a conflict between libtinfo.so and libtinfow.so. Both are
linked into cscope:

    $ ldd $(which cscope)
    /bin/bash: .../lib/libtinfo.so.6: no version information available (required by /bin/bash)
        linux-vdso.so.1 (0x00007fff5dbcb000)
        libncursesw.so.6 => .../lib/libncursesw.so.6 (0x00007f435cc69000)
        libtinfo.so.6 => .../lib/libtinfo.so.6 (0x00007f435cc2c000)
        libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f435ca29000)
        libtinfow.so.6 => .../lib/libtinfow.so.6 (0x00007f435c9e8000)
        /lib64/ld-linux-x86-64.so.2 (0x00007f435cca7000)

Specifically linking libtinfow.so instead of libtinfo.so resolves the
issue.

All instances of '...' above represent the path to the installed ncurses
for Spack.
2020-06-12 12:29:43 -07:00
Sinan
f44a93e4f7
New package: alps (#17023) 2020-06-12 12:27:40 -07:00
Harsh Bhatia
cb20f0152c
pygpu: fix linking with gpuarray (#17033)
* add build_ext_args to link pygpu with gpuarray
* libgpuarray: add version 0.7.6
2020-06-12 12:20:57 -07:00
Harmen Stoppels
804b6f2483
libtree package: add version 1.2.0, 1.1.4, and 1.1.3 (#17035) 2020-06-12 11:39:40 -07:00
Patrick Gartung
08c21e4e74
Buildcache: Fix bug in binary string replacement (#17075)
* Fix bug in binary string replacement that results in padding being added multiple times

* Update comment

* Update comment again
2020-06-12 13:38:33 -05:00
Matthias Diener
c4756159f3
New package: clinfo (#17042) 2020-06-12 11:37:34 -07:00
Axel Huebl
42e6cb769e
Geant4 +Python: fix module load (#17046)
Adding `extends('python')` makes sure that a

```
spack load -r geant4 +python
python -c "import Geant4"
```

find the module.
2020-06-12 11:28:05 -07:00
Axel Huebl
34fb4b30dc
libffi 3.3: float128 ppc patch (#17043)
Apply a patch to fix builds on Power7 and 8, wrongly requesting
float128 support.

Upstream patch: libffi/libffi#561
2020-06-12 11:25:06 -07:00
Adam J. Stewart
4e39dc7174 readline: fix linking to ncurses 2020-06-12 11:05:28 -07:00
Robert Blake
50aba2729b
New package: antimony (#17061) 2020-06-12 10:42:59 -07:00
Brian Van Essen
dcd22517c7
hydrogen: add version 1.3.4 (#17066) 2020-06-12 09:53:50 -07:00
Tom Payerle
e1e455ef3f
magics: add version 4.2.4 (#17054)
* Add version 4.2.4
* Update checksum for 4.1.0
* Version @4: requires python and py-jinja2 to build
2020-06-12 09:53:08 -07:00