Chris Marsh
fd46923216
GDAL: Ensure a spack libproj is used instead of a system libproj ( #41785 )
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* Ensure a spack libproj is used instead of a system libproj when libproj < 8.
spack/spack/issues/41299
* Fix style as per ci-bot
* Fix style as per ci-bot
* Ensure 3.5:3.8.
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-12-19 23:43:20 -07:00
Andrey Perestoronin
bb2975b7f1
intel-oneapi-compilers 2024.0.2 ( #41778 )
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* new compiler packages
* Fix ifort version number
---------
Co-authored-by: Robert Cohn <rscohn2@gmail.com>
2023-12-19 23:08:20 -07:00
Annop Wongwathanarat
1168f19e60
Require target=x86_64 for some packages ( #41633 )
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This resolves issue #41148
2023-12-19 17:50:49 -07:00
Peter Scheibel
5d50ad3941
"spack diff": add ignore option for dependencies ( #41711 )
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* add trim function to `Spec` and `--ignore` option to 'spack diff'
Allows user to compare two specs while ignoring the sub-DAG of a particular dependency, e.g.
spack diff --ignore=mpi --ignore=zlib trilinos/abcdef trilinos/fedcba
to focus on differences closer to the root of the software stack
2023-12-19 16:37:44 -08:00
kwryankrattiger
a43156a861
CI: Disable downloading artifacts from upstream jobs ( #41432 )
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* CI: Disable downloading artifacts from upstream jobs
* CI: Default .base-jobs are `when:manual`
2023-12-19 15:53:28 -07:00
Harmen Stoppels
ec2729706b
environment_modifications_for_specs: do not mutate spec.prefix ( #41737 )
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Sometimes env variables computed in `setup_run_environment` depend on tests
w.r.t. files in `spec.prefix`, but Spack temporarily projects `spec.prefix` to
the view.
This is problematic for two reasons:
1. Some packages iterate over `<prefix>/bin`: they expect only the current
package's executables, but find all linked in the view, leading to false
positives.
2. Some packages test for `os.path.islink(...)`, which is always true in a view
`gcc` is an example that does both.
This PR lets Spack compute the environment modifications using the original
prefix, and projects to the view afterwards
2023-12-19 23:33:16 +01:00
Dom Heinzeller
494d3f9002
Skip 'icc.patch' in var/spack/repos/builtin/packages/py-gevent/package.py for py-gevent@23.7.0+ ( #41568 )
2023-12-19 12:44:29 -06:00
Harmen Stoppels
4f8b856145
e4s: add julia ( #41768 )
2023-12-19 18:17:54 +01:00
Massimiliano Culpo
0eca79e7e4
Add an audit to prevent virtual packages with variants specified ( #41747 )
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Currently, a virtual spec is composed of just a name and a version. When a virtual spec contains other components, such as variants, Spack won't emit warnings or errors but will silently drop them - which is unexpected by users.
2023-12-19 18:05:33 +01:00
Ben Wibking
f245bde772
adios2: fix build failure in 2.7.1 ( #41753 )
2023-12-19 17:58:05 +01:00
Mikael Simberg
4aee067bb0
umpire: backport -fcompare-debug-second flag removal ( #41506 )
2023-12-19 17:24:52 +01:00
Martin Aumüller
cc25a0e561
ffmpeg: mostly build fixes ( #41050 )
2023-12-19 17:23:23 +01:00
Aiden Grossman
3f063153f0
openblas: add patches to build with clang ( #39138 )
2023-12-19 17:22:29 +01:00
Dr Marco Claudio De La Pierre
aa350a4ed1
removing deprecated: recipes tower-agent and tower-cli, as nf- prefixed recipes available ( #41576 )
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Signed-off-by: Dr Marco Claudio De La Pierre <marco.delapierre@seqera.io>
2023-12-19 17:16:26 +01:00
Brian Van Essen
e36bee41a0
lbann: relax the requirement on protobuf ( #41591 )
2023-12-19 17:16:04 +01:00
dependabot[bot]
138d0c7a13
build(deps): bump black from 23.11.0 to 23.12.0 in /lib/spack/docs ( #41615 )
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Bumps [black](https://github.com/psf/black ) from 23.11.0 to 23.12.0.
- [Release notes](https://github.com/psf/black/releases )
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md )
- [Commits](https://github.com/psf/black/compare/23.11.0...23.12.0 )
---
updated-dependencies:
- dependency-name: black
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-19 17:14:05 +01:00
Thomas-Ulrich
a688479564
easi: specify better the impalajit dependency ( #41637 )
2023-12-19 17:08:22 +01:00
Wouter Deconinck
5ead4c2d56
pcre: ensure consistency between autotools and cmake builds ( #41644 )
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Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-12-19 16:57:59 +01:00
Richard Berger
2e18fbbdeb
legion: do not set HIP_PATH env variable ( #41660 )
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* legion: do not set HIP_PATH env variable
* flecsi: workaround Legion CMake for +rocm
2023-12-19 16:14:19 +01:00
Howard Pritchard
02eafeee03
openmpi: allow external libevent in general case ( #41686 )
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add a internal-libevent variant to add an out.
related to #41549
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2023-12-19 14:54:25 +01:00
wspear
812a43621b
tau : v2.33.1 and later requires otf2 v3 ( #41691 )
2023-12-19 12:20:47 +01:00
Richard Berger
0fe338b526
legion: inject correct mpicc to embedded GASnet slingshot11 config ( #41701 )
2023-12-19 12:20:05 +01:00
Tom Payerle
3dc02e55e6
ufs-weather-model: add build dependency ( #41724 )
2023-12-19 04:18:48 -07:00
Adam J. Stewart
7023edb37c
PyTorch: update ecosystem ( #41713 )
2023-12-19 12:18:25 +01:00
James Beal
f1fdaca345
samtools: add v1.19 ( #41634 )
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Co-authored-by: James Beal <jb23@sanger.ac.uk>
2023-12-19 12:13:57 +01:00
Mikael Simberg
d4454e54dc
ut: add v2.0.0 and v2.0.1 ( #41771 )
2023-12-19 04:13:33 -07:00
Paul Kuberry
969718d176
xyce: remove CMake test for all compilers ( #41679 )
2023-12-19 12:10:16 +01:00
Jack Morrison
0a9179fddb
intel-mpi-benchmarks: add v2021.7, v2021.6, v2021.5, v2021.4 ( #41730 )
2023-12-19 11:42:13 +01:00
Pramod Kumbhar
b5b0a76991
creduce: fix build of @develop ( #41258 )
2023-12-19 11:30:42 +01:00
Christopher Christofi
59b39f3eba
uthash: add new package ( #41732 )
2023-12-19 11:26:13 +01:00
Wouter Deconinck
7a0c4e8017
acts: new versions 31.* ( #41733 )
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This adds three new versions in the 31.* series. Release notes of 31.0.0 at https://github.com/acts-project/acts/releases/tag/v31.0.0 . No changes to the CMakeLists.txt files that need addressing in the package recipe.
The only new feature I'm a bit concerned about is https://github.com/acts-project/acts/pull/2626 , which replaces testing for C++20 concepts support by the feature-testing macro `__cpp_concepts`, which is also a C++20 feature. So technically we now should require `cxxstd=20` even though Acts itself still allows (and defaults to) 17. Judging by https://en.cppreference.com/w/cpp/compiler_support/20 , the support for feature-testing macros was added very early by most compilers.
2023-12-19 11:13:07 +01:00
Thomas Madlener
1ddf4ee6ba
whizard: fix support for building with hepmc output ( #41538 )
2023-12-19 11:12:27 +01:00
dependabot[bot]
12d0507cb7
build(deps): bump black in /.github/workflows/style ( #41616 )
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Bumps [black](https://github.com/psf/black ) from 23.11.0 to 23.12.0.
- [Release notes](https://github.com/psf/black/releases )
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md )
- [Commits](https://github.com/psf/black/compare/23.11.0...23.12.0 )
---
updated-dependencies:
- dependency-name: black
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-19 10:47:57 +01:00
Wouter Deconinck
cf99912352
flexiblas: explicitly set SYSCONFDIR ( #41748 )
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As of CMake 3.4, [GNUInstallDirs](https://cmake.org/cmake/help/latest/module/GNUInstallDirs.html ) treats `SYSCONFDIR` differently for a prefix that starts with `/opt`, then "the SYSCONFDIR value etc becomes /etc/opt/...." In the case of flexiblas, that results in failing attempts to write files to a system directory.
Since [flexiblas version 1](0f2d2c7659 (diff-1e7de1ae2d059d21e1dd75d5812d5a34b0222cef273b7c3a2af62eb747f9d20aR16)
2023-12-19 10:47:16 +01:00
snehring
9723fe88f5
rebayes: add v1.2.2 ( #41749 )
2023-12-19 10:44:16 +01:00
Christopher Christofi
2439ff56a5
kalign: add v3.4.0 ( #41758 )
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Co-authored-by: Rocco Meli <r.meli@bluemail.ch>
2023-12-19 10:35:23 +01:00
Massimiliano Culpo
2ef8d09fc7
spack config get/blame: with no args, show entire config
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This PR changes the default behavior of `spack config get` and `spack config blame`
to print a flattened version of the entire spack configuration, including any active
environment, if the commands are invoked with no section arguments.
The new behavior is used in Gitlab CI to help debug CI configuration, but it can also
be useful when asking for more information in issues, or when simply debugging Spack.
2023-12-19 01:26:53 -08:00
Mosè Giordano
e5e767b300
julia: set compatibility with suite-sparse ( #41754 )
2023-12-19 10:17:06 +01:00
Rocco Meli
1c6b38f36d
gnina: add version 1.1 ( #41762 )
2023-12-19 09:39:46 +01:00
Arne Becker
091cd47caa
tnftp: new package ( #41763 )
2023-12-19 09:38:42 +01:00
John W. Parent
1ebf1a0c6c
libxml2: correct improper use of base builder meta ( #41760 )
2023-12-19 09:34:59 +01:00
Greg Becker
56761649a2
environment modifications for externals ( #41723 )
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* allow externals to configure environment modifications
* docs for external env modification
---------
Co-authored-by: becker33 <becker33@users.noreply.github.com>
2023-12-18 22:24:15 -06:00
dependabot[bot]
6a19cf1b42
build(deps): bump docker/metadata-action from 5.3.0 to 5.4.0 ( #41764 )
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Bumps [docker/metadata-action](https://github.com/docker/metadata-action ) from 5.3.0 to 5.4.0.
- [Release notes](https://github.com/docker/metadata-action/releases )
- [Commits](31cebacef4...9dc751fe24
2023-12-18 16:31:02 -08:00
Thomas Madlener
ef4274ed2e
podio: Add latest tag 0.17.4 ( #41735 )
2023-12-18 22:37:00 +01:00
dependabot[bot]
88b8fc63ef
build(deps): bump isort in /.github/workflows/style ( #41650 )
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Bumps [isort](https://github.com/pycqa/isort ) from 5.12.0 to 5.13.2.
- [Release notes](https://github.com/pycqa/isort/releases )
- [Changelog](https://github.com/PyCQA/isort/blob/main/CHANGELOG.md )
- [Commits](https://github.com/pycqa/isort/compare/5.12.0...5.13.2 )
---
updated-dependencies:
- dependency-name: isort
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-18 10:23:51 -08:00
dependabot[bot]
639a6a6897
build(deps): bump isort from 5.12.0 to 5.13.2 in /lib/spack/docs ( #41651 )
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Bumps [isort](https://github.com/pycqa/isort ) from 5.12.0 to 5.13.2.
- [Release notes](https://github.com/pycqa/isort/releases )
- [Changelog](https://github.com/PyCQA/isort/blob/main/CHANGELOG.md )
- [Commits](https://github.com/pycqa/isort/compare/5.12.0...5.13.2 )
---
updated-dependencies:
- dependency-name: isort
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-18 10:23:18 -08:00
Massimiliano Culpo
af96fef1da
spack.config: cleanup and add type hints ( #41741 )
2023-12-18 17:05:36 +01:00
Michael Kuhn
7550a41660
gcc: fix run environment variables not being exported in environments ( #41729 )
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Since views use symlinks, all compiler binaries were skipped in this
case. Instead, only skip them if their target does not exist.
2023-12-18 16:19:38 +01:00
Mikael Simberg
ffd2a34d9e
pika-algorithms: Add upper bound for pika version ( #41736 )
2023-12-18 15:12:36 +01:00
Michael Kuhn
6a74a82e19
glib: add v2.78.3 ( #41697 )
2023-12-18 10:06:23 +01:00
