Commit graph

18933 commits

Author SHA1 Message Date
Frank Willmore
c3fad97487
intel-oneapi-compilers package: correct module file (#20686)
This properly sets PATH/CPATH/LIBRARY_PATH etc. to make the
Spack-generated module file for intel-oneapi-compilers useful
(without this, 'icx' would not be found after loading the module
file for intel-oneapi-compilers).
2021-01-06 10:45:42 -08:00
Robert Cohn
74a54077f5
fix mpi lib paths, add virtual provides (#20693) 2021-01-06 10:37:24 -08:00
Ye Luo
844d98f727
Remove hard-coded standard C++ library selection and add more releases in llvm package (#19933)
* Restore OS based Clang default choice of C++ standard library.

* Add LLVM 11.0.1 release
2021-01-06 12:17:20 -06:00
Toyohisa Kameyama
587d25ad45
parallelio: New Package. (#20673) 2021-01-06 10:05:43 -08:00
Dr. Christian Tacke
dabee2cee8
libc: Return empty libs (#20338)
The C-Library for the current compiler should already be used by the compiler. So there is no point in returning any libs for this package.

Without this patch: if one uses this as an external package (as intended), then this will can inject system library paths into the build process at the wrong place.
2021-01-06 10:01:07 -08:00
jkelling
8956c8c7b7
magma: remove -W args from CMakeLists.txt when using nvhpc (#20516) 2021-01-06 10:51:05 +01:00
Erik Schnetter
8860db4021
arrayfire: added v3.7.3 (#20612) 2021-01-06 10:46:02 +01:00
Rémi Lacroix
89b94d968d
libtheora: fetch a patch instead of storing it in Spack (#20620) 2021-01-06 10:44:05 +01:00
Rémi Lacroix
d30f9e5806
Blitz: added v1.0.2 (#20614) 2021-01-06 10:35:21 +01:00
Josh Essman
1cd4b134cb
mfem: link to nveccuda when +sundials+cuda (#20588) 2021-01-06 10:34:42 +01:00
Rémi Lacroix
c2411117f3
r-genefilter: added v1.72. (#20627) 2021-01-06 10:23:25 +01:00
Rémi Lacroix
83697161b4
Nek5000: Improve support for OpenMPI without legacy launchers. (#20622)
Use "srun" for the nekmpi wrapper when we know "mpiexec" won't be available.
2021-01-06 10:20:41 +01:00
Rémi Lacroix
3f40d15c84
Gromacs: simplify hwloc dependency. (#20619)
Additionaly remove the version constraint as newer versions work with OpenMPI 4.X.Y and the new experimental concretizer is now available for testing.
2021-01-06 10:19:48 +01:00
Adam J. Stewart
5aabd59335
py-scipy: add v1.6.0 (#20637) 2021-01-06 10:17:36 +01:00
Adam J. Stewart
4da57e8afa
GDAL: add v3.2.1 (#20664) 2021-01-06 10:06:32 +01:00
Tao Lin
05ab114ff9
GenFit: added new package (#20653)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-01-06 09:55:49 +01:00
Brian Van Essen
385c503d8e
lbann: make catch2 a "build" and "test" dependency (#20666) 2021-01-06 09:53:30 +01:00
Luca Heltai
812a3fb0ae
dealii: fix concretization problem between trilinos and adol-c (#20606) 2021-01-06 09:51:21 +01:00
Adam J. Stewart
c247999c65
py-sphinx-rtd-theme: remove npm dependency (#20675) 2021-01-06 09:39:06 +01:00
Adam J. Stewart
0a69cf5936
py-numpy: add v1.19.5 (#20684) 2021-01-06 09:16:46 +01:00
Massimiliano Culpo
3ae4a5d3cf qa: use dependabot to update Github Actions 2021-01-06 00:00:33 -08:00
Adam J. Stewart
323667ce2a
fakexrandr: add new package (#20687) 2021-01-06 08:59:12 +01:00
Adam J. Stewart
564aebdb1a
Xorg proto: type build -> link (#20685) 2021-01-06 08:56:22 +01:00
Desmond Orton
8d0f5c0a6f
py-picrust2: added new package (#20455) 2021-01-06 08:54:36 +01:00
Gregory Lee
7dbc4d32db
update stat and deps with bug fixes (#20690) 2021-01-06 08:36:56 +01:00
Sinan
1f2f82d388
libspatialite: added v5.0.0 (#20293)
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2021-01-06 08:16:25 +01:00
estewart08
7faa0a9e43
Rocm-openmp-extras 4.0 version updates (#20692) 2021-01-05 22:48:54 -06:00
Sreenivasa Murthy Kolam
023cb7ab7f
bump up version for rocm-4.0.0 release (#20691) 2021-01-05 22:25:45 -06:00
ketsubouchi
15a7723645
alps: fix for latest gcc and test bug (#20462)
* gcc build OK

* gcc mc-01 OK

* time test problem

* remove comment and debug

* use climit

* TAB to spaces

* comment
2021-01-05 22:24:50 -06:00
Massimiliano Culpo
0111a18b23 concretizer: make rules on virtual packages more linear
fixes #20679

In this refactor we have a single cardinality rule on the
provider, which triggers a rule transforming a dependency
on a virtual package into a dependency on the provider of
the virtual.
2021-01-05 16:59:15 -08:00
Vanessasaurus
67ce1939a3
spack python: allow use of IPython (#20329)
This adds a -i option to "spack python" which allows use of the
IPython interpreter; it can be used with "spack python -i ipython".
This assumes it is available in the Python instance used to run
Spack (i.e. that you can "import IPython").
2021-01-05 16:54:47 -08:00
andymwood
35d81a9006
VTK: add -no-ipo for builds using intel compiler (#20480)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-05 13:11:29 -08:00
Greg Becker
61c1b71d38
bugfix for target adjustments on target ranges (#20537) 2021-01-05 12:27:13 -08:00
Ethan Stam
18110346c8
Mesa: use auto when llvm is built shared (#20683) 2021-01-05 13:04:57 -07:00
estewart08
32c7241089
Updates and Enhancements to AOMP Recipe. Added version 3.10.0. (#20464)
* Update recipe for AOMP.
Reduced repitition with version hashes.
Expanded dependency versioning.
Reduced repitition with cmake args.
Added version 3.10.0

* Update dependency versions and remove uneeded quotes.

* Update var/spack/repos/builtin/packages/aomp/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-05 13:39:57 -06:00
estewart08
c55b3bf2d9
AMD ROCm 3.10 Release: Add new package recipe for rocm-openmp-extras. (#20204)
* AMD ROCm 3.9 Release: Add new package recipe for openmp-extras.

* Updated openmp-extras recipe.

Changed name to rocm-openmp-extras.
Reduced repitition with component hashes.
Adjusted the removal of CMAKE_BUILD_TYPE.
Reduced repitition in cmake args.
Added 3.10.0 to recipe.

* Update python/py-setuptools dependency versions.

* Expand dependency versions, fix the openmp cmake args.

* Remove double formats.

* Substitute escape characters with string=True for filter_file(s).

* Remove CMAKE_VERBOSE_MAKEFILE, already present in standard args.
2021-01-05 13:39:38 -06:00
Rémi Lacroix
072d21ad96
Berkeley-DB: Fix compilation with NVIDIA HPC Compilers on Red Hat 8. (#20616) 2021-01-05 10:45:22 -08:00
Luca Heltai
155a3b3a08
Fix compilation for boost@1.72: (#20618) 2021-01-05 10:42:11 -08:00
Rémi Lacroix
18d14eb765
ParaView: Allow choosing a CUDA architecture. (#20623)
This is useful when the "native" architecture cannot be guessed.
2021-01-05 10:37:00 -08:00
Harmen Stoppels
4a7c4e6667
Add cray-fftw (#20654) 2021-01-05 10:22:49 -08:00
Robert Cohn
a1e4465c59
compiler version format changed (#20671) 2021-01-05 09:37:46 -08:00
MBlaschek
4d3c9da872
Update of Eccodes to 2.19.1 (#20368)
* Update of Eccodes to 2.19.1

* PEP8

* PEP8

* PEP8-whitespace

* Update var/spack/repos/builtin/packages/eccodes/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Michael Blaschek <michael.blaschek@univie.ac.at>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-05 10:09:11 -06:00
AMD Toolchain Support
350418ec35
AOCC support for WRFv3.9.1.1 (#20568)
* AOCC support for WRFv3.9.1.1

* r' as prefix for string literal
2021-01-05 10:06:24 -06:00
Todd Gamblin
5ac05db917
concretizer: use consistent naming for compiler predicates (#20677)
Every other predicate in the concretizer uses a `_set` suffix to
implement user- or package-supplied settings, but compiler settings use a
`_hard` suffix for this. There's no difference in how they're used, so
make the names the same.

- [x] change `node_compiler_hard` to `node_compiler_set`
- [x] change `node_compiler_version_hard` to `node_compiler_version_set`
2021-01-05 08:41:01 +01:00
Axel Huebl
e6d462589f
OpenMPI: Depends on hwlock & libevent (#20658)
* OpenMPI: Depends on hwlock & libevent

Both hwlock & libevent are required dependencies of Open MPI.
While they are also shipped internally, newer releases (>=4.0)
will start looking for external packages by default.

This caused build issues of Open MPI 4.0.5 with Fortran on macOS
10.15.

* Open MPI 4.0: libevent external

Internally shipped libevent just works fine for prior releases.
2021-01-04 21:05:11 -06:00
Jim Huang
e5b03770ed
SS2NEON transition to new repository; update headers and patch (#20647) 2021-01-04 18:45:47 -08:00
mic84
ad29f2148e
amrex: new version 21.01 (#20659) 2021-01-04 18:41:06 -08:00
Stephanie Brink
dec98ed754
py-hatchet: added latest versions up to 1.3.0 (#20667) 2021-01-04 18:38:44 -08:00
Peter Scheibel
22a45e010a
Bugfix: Support old installations using Cray MPICH (#20663)
#20076 moved Cray-specific MPICH support from the Spack MPICH package
to a new cray-mpich Package. This broke existing package installs
using external mpich on Cray systems. This PR keeps the cray-mpich
package but restores the Cray-specific MPICH support for older
installations.

In the future this support should be removed from the Spack mpich
package and users should be directed to use cray-mpich on Cray.
2021-01-04 17:19:08 -08:00
Sreenivasa Murthy Kolam
f4acf74091
bump up rocm math libs recipes for rocm-4.0.0 release (#20651) 2021-01-05 00:02:03 +01:00