Commit graph

4225 commits

Author SHA1 Message Date
William Scullin
1d6fff1f2d New package: meson build system (#5250)
* Adding a spec for the meson build system
2017-08-31 15:13:52 -10:00
Audrey Thoma
1fff48641f kmergenie: new package (#5257) 2017-08-31 15:01:09 -10:00
Todd Gamblin
1136a7f069 jags: new package (#5256)
Just another Gibbs sampler
2017-08-31 14:58:55 -10:00
las_thoma15
cc3d8bacd7 adding config args and virtual dependencies 2017-08-31 09:37:24 -05:00
Denis Davydov
bb29ec1843 mpich: fix MPI_Barrier segfault (#5235)
* mpich: fix MPI_Barrier segfault

* one more link
2017-08-30 18:58:23 -05:00
Denis Davydov
b5a9f8ead1 add optional maintainers property to package (#5230)
* add optional package maintainers
2017-08-30 10:56:24 -07:00
Audrey Thoma
de5111cd50 hapcut2: new package (#5238) 2017-08-30 00:57:57 -07:00
Christoph Junghans
6036a5a113 lammps: install headers (#5226)
* lammps: install headers
* use prefix.include.lammps
2017-08-28 16:33:30 -07:00
Audrey Thoma
56f4f74b72 redundans: new package (#5217)
* redundans: new package

* fixing url for fastaindex and adding dep for pyscaf
2017-08-28 15:25:19 -05:00
Michael Kuhn
92df1492f6 go: Update to 1.9 (#5216) 2017-08-25 20:29:02 -05:00
Mark C. Miller
c769e99eda Zfp shared libs (#5212) 2017-08-25 15:08:49 -07:00
Denis Davydov
c0d3d33b58 dealii: add nanoflann, sundials and adol-c plus fixes on macOS (#5175)
* expat: fix build on macOS

* nanoflann: add new package

* sundials: fix compilation on macOS with clang+gfortran

* adol-c: add 2.6.3

* dealii: add adol-c, nanoflann, sundials and 8.5.1

* sundials: minor cleanup
2017-08-24 20:18:06 -05:00
Michael Kuhn
61cc55985b pkgconf: New package (#5202)
pkgconf is a new pkg-config implementation with additional features and
no external dependencies.

For a detailed comparison, see: http://pkgconf.org/features.html
2017-08-24 17:54:14 -07:00
Audrey Thoma
6ff82ff5a3 ray: new package (#5200) 2017-08-24 16:31:21 -07:00
Sergey Kosukhin
a48b5a627c Make jpeg a virtual dependency. (#5190)
* Make jpeg a virtual dependency.

* Make 'libjpeg-turbo' the default implementation of 'jpeg'.
2017-08-24 10:30:35 +02:00
sknigh
49a9d63be7 Added options to libfabrics (#5191) 2017-08-23 15:47:28 -07:00
Audrey Thoma
359b21c888 pgdspider: new package (#5186)
* pgdspider: new package

* couple of fixes
2017-08-23 08:34:12 -05:00
Axel Huebl
0daa639788 Boost: develop (#5184)
Adds a development version of boost, based on their github master
repo.
Git clones the submodules forever, but installs! :)

Useful for testing since boost tends to break complex software
dependencies quite often. This helps testing it before releases.
2017-08-23 07:31:34 -05:00
Audrey Thoma
79df4db8e5 tcoffee: new package (#5185) 2017-08-22 13:48:23 -05:00
Axel Huebl
61c5b5faa7 Boost: 1.65.0 (#5182)
Adds the latest boost release.
Downloads seem to be pointing to bintray from the official homepage.
2017-08-22 13:46:54 -05:00
Sergey Kosukhin
f52bdeda2a Package 'libaec': no need to specify per version urls. (#5176) 2017-08-22 09:27:03 +02:00
Sergey Kosukhin
e55efdf8ed Updates for package 'cdo'. (#5179)
* Package 'cdo': removed obsolete version 1.6.9.

* Package 'cdo': updated urls.

* Package 'cdo': added version 1.9.0.

* Package 'cdo': no need to specify per version urls.

* Package 'cdo': switched from Package to AutotoolsPackage.

* Package 'cdo': added new variant 'openmp'.

* Package 'cdo': variants 'curl' and 'magics' by default.
2017-08-22 08:42:55 +02:00
Audrey Thoma
e0ebf44239 py-pyrad: new package (#5181) 2017-08-21 17:58:05 -05:00
Massimiliano Culpo
581f70ff6f Added custom messages for conflicts directive. fixes #4965 (#5083)
Users can now add an optional custom message to the conflicts directive.
Layout on screen has been changed to improve readability and the long
spec is shown in tree format. Two conflicts in `espresso` have been
modified to showcase the feature.
2017-08-21 09:20:07 -07:00
Axel Huebl
bd8ac0a738 Protobuf: 3.4 (#5177) 2017-08-21 07:29:47 -05:00
Todd Gamblin
10bb681b57 Unbuffer so that output from packages appears when redirecting
- Python I/O would not properly interleave (or appear) with output from
  subcommands.

- Add a flusing wrapper around sys.stdout and sys.stderr when
  redirecting, so that Python output is synchronous with that of
  subcommands.
2017-08-20 16:51:10 -07:00
Massimiliano Culpo
99fb394ac1 Group Travis CI jobs in stages (#5104)
- This should speed-up Travis CI tests and refers to #5049

- Travis uses build-stages to group tests together
    - The idea is to let fast tests fail first, then move to longer ones.
    - Added external perl to avoid download failure from CPAN and reduce build time
    - Disabling perl-dbi: continues to fail with (504 Gateway Time-out) on Travis

- We now cover all the build systems in tests:
    - Add back `openblas` to Travis as a separate package.
    - Switched `openblas` for `astyle` to build a simpler MakefilePackage.
    - Added 'tut' (WafPackage)
    - Added 'py-setuptools' (PythonPackage)
    - Added 'perl-dbi' (PerlPackage)
    - Added 'build_systems' directory to the ones for which we get a summary
    - Added 'openjpeg' (CMakePackage)
    - Added 'r-rcpp' (RPackage)
    - Added comments to build tests to show the covered build system
2017-08-19 14:52:27 -07:00
健美猫
be0e051870 Add version 1.7.1 for cub. (#5164) 2017-08-19 09:22:19 -05:00
Adam Moody
d80c70538f lbann: add depends_on hwloc (#5165) 2017-08-19 01:00:52 -05:00
Audrey Thoma
fa39afb598 cufflinks: new package (#5158) 2017-08-18 16:02:15 -05:00
Audrey Thoma
3d1c5f679f muscle: fix (#5160) 2017-08-18 16:01:30 -05:00
Kelly (KT) Thompson
c41c5bc9b8 For Tk, also provide a symlink for wishX.X. (#5161)
+ gitk (and possibly other tools) expect to find the Tk executable `wish`, so
  add a symlink with this name that points to the the versioned filename.
+ Example: `wish --> wish8.6`
2017-08-18 16:01:02 -05:00
healther
6d155833c5 build boost with graph library even when +mpi
Previously, when +graph and +mpi were enabled, the graph library
was replaced with the graph_parallel library. This alters the
logic for +graph+mpi to build both libraries.
2017-08-18 11:19:55 -07:00
Audrey Thoma
9ad8e79332 corset: new package (#5157) 2017-08-18 11:02:58 -05:00
Audrey Thoma
6abe8e7d91 parsimonator: new package (#5143)
* parsimonator: new package

* adding variant conflict
2017-08-18 09:36:35 -05:00
Audrey Thoma
5fb23b21e0 vegas2: new package (#5150)
* vegas2: new package

* small version things
2017-08-18 09:36:18 -05:00
George Hartzell
9af953a4cb Add info for nextflow@v0.25.6 (#5148) 2017-08-18 09:36:02 -05:00
Stephen McDowell
61238baf56 add man-db package and friends (#4844)
* add man-db package and friends

* fix groff, libpipeline, and man-db dependencies

* remove parallel groff altogether, build-only deps
2017-08-18 14:17:25 +02:00
zenln
6d2092e1eb Add a new package for gaussian (#5149)
* Gaussian: Gaussian install

* Adding Patch to spack installed files

* Adding extra environment variables for gaussian at run time

* Adding provides linda

* Adding linda as a provided package

* Shortning vars and fixing flake8 indentation and spacings
2017-08-17 18:33:44 -05:00
Audrey Thoma
cf796ed595 pagit: new package (#5140)
* pagit: new package

* removed unneeded env var
2017-08-17 15:32:30 -05:00
Audrey Thoma
94af7ccb77 new package libfabric (#5146)
* pbmpi: new package

* forgot about libfabric
2017-08-17 15:31:31 -05:00
Audrey Thoma
cb4ede001c pbmpi: new package (#5144) 2017-08-17 11:59:02 -05:00
Audrey Thoma
46d8cb8913 paml: new package (#5142) 2017-08-17 11:21:56 -05:00
Audrey Thoma
aa21590099 microbiomeutil: new package (#5134)
* microbiomeutil: new package

* got rid of unnecessary self

* oops
2017-08-17 09:19:00 -05:00
Adam J. Stewart
187f4420e2 Add new package for rhash, a cmake dependency (#5120)
* Add new package for rhash, a cmake dependency

* Add missing libuv dependency to cmake
2017-08-17 08:17:45 -05:00
Audrey Thoma
3bb7767839 py-faststructure: new package (#5131) 2017-08-17 07:49:57 -05:00
healther
d65d1269b9 add libiconv dependency to libxslt (#5138)
this is a fix to an installation that failed due to
configure for some reason not finding the libiconv
shipped with glibc, but still trying to link against it
see http://xmlsoft.org/FAQ.html
2017-08-17 07:18:02 -05:00
sknigh
dd790fdaae add missing dependencies to elfutils (#5135) 2017-08-16 20:46:12 -05:00
Audrey Thoma
4c32b0ad56 tppred: new package (#5091)
* tppred: new package

* fixed url_for_version

* fixed version spec on dependency

* removing unneeded dependency
2017-08-16 17:48:50 -07:00
Audrey Thoma
d423f85fed dialign-tx: new package (#5126)
* dialign-tx: new package

* utilizing build_directory variable

* forgot one
2017-08-16 17:36:29 -07:00