Commit graph

14022 commits

Author SHA1 Message Date
Patrick Gartung
9a85a7a5aa Binary caches on MacOS - allow expanded RPATHs (#11345)
Fixes #11335

Update the Spack compiler wrappers to add the headerpad_max_install_names
linker flag on MacOS. This allows the install_name_tool to rewrite
the RPATH entry of the binary to be longer if needed. This is
primarily useful for creating and distributing binary caches of
packages (i.e. using the "spack buildcache" command); binary caches
created on MacOS before this commit may not successfully relocate
(if the target root path is larger).
2019-05-04 06:41:57 +09:00
cedricchevalier19
328a3f97fd cURL package: add gssapi option (#11344)
This option allows curl and its dependents (git, ...) to work with
proxy using Kerberos authentification.
2019-05-04 05:43:56 +09:00
Sinan
ddf485ee6d New package: GMTSAR (#11315) 2019-05-04 05:40:14 +09:00
Thilina Rathnayake
c2f9061a3c Nek5000: Fix CFLAGS and FFLAGS handling (#11339) 2019-05-04 03:52:45 +09:00
Justin S
9b0000d04f New package: PASTA (#11338) 2019-05-04 03:50:54 +09:00
Sinan
df15969a7d rJava package: add version 0.9-11 (#11334) 2019-05-04 03:45:35 +09:00
Owen Solberg
c031cff2bc BLAST-Plus package: add versions 2.9.0 and 2.8.1 (#11333) 2019-05-04 03:33:35 +09:00
Greg Sjaardema
74fe12bb4e NETCDF: add version 4.7.0 (#11330) 2019-05-04 03:31:36 +09:00
Greg Sjaardema
5d9d8171bb PARALLEL-NETCDF: add version 1.11.1 (#11329) 2019-05-04 03:30:35 +09:00
Sinan
ba58b2f43a GDAL package: add version 2.4.1 (#11328) 2019-05-04 03:30:10 +09:00
Leonhard Reichenbach
edac053cf5 libunistring: added newer versions and patch older ones (#11255)
* Add versions 0.9.10, 0.9.9, and 0.9.8
* Port a change in 0.9.10 to earlier versions as a patch
2019-05-04 03:21:43 +09:00
Massimiliano Culpo
5ffb270714 Added a function that concretizes specs together (#11158)
* Added a function that concretizes specs together

* Specs concretized together are copied instead of being referenced

This makes the specs different objects and removes any reference to the
fake root package that is needed currently for concretization.

* Factored creating a repository for concretization into its own function

* Added a test on overlapping dependencies
2019-05-04 03:04:38 +09:00
Federico Ficarelli
0425670942 arm-forge: add all available versions (#11198)
* arm-forge: add all available versions

* Add TODO for the version hell

* Fix linting

Looks like 'black' formatter isn't Spack friendly

* Fix versions ordering

* Remove obsolete package (allinea-forge → arm-forge)
2019-05-03 08:14:25 -07:00
Chris Green
2d8708e542 range-v3: New versions 0.3.7, 0.4.0, 0.5.0. (#11358) 2019-05-03 09:13:50 +02:00
Chris Green
2155d611df libxml2: New version 2.9.9. (#11357) 2019-05-03 09:13:22 +02:00
Chris Green
fe7e85e6d9 cppunit: New version 1.14.0. (#11359) 2019-05-03 09:12:22 +02:00
Phil Carns
2c2228df59 add BMI package (#11310)
- also enable optional dependency in Mercury
2019-05-03 09:11:31 +02:00
Nichols A. Romero
42b01c02b1 QMCPACK: compiler flags and mpi wrapper updates (#11326)
* Set mpi compiler wrappers using CC/etc. variables as recommended
  at https://spack.readthedocs.io/en/latest/packaging_guide.html#compiler-wrappers
  rather than setting CMake variables like -DCMAKE_C_COMPILER
* Use convenience functionality provided by inherited CMakePackage to
  export all compiler flags as CMake options
2019-05-03 11:13:19 +09:00
Christoph Junghans
54c19ce16c py-espresso: added v4.0.2 2019-05-03 10:40:54 +09:00
Patrick Schratz
dd668cb00c grass package: use url_for_version, add versions (#11324) 2019-05-03 10:40:23 +09:00
Vanessasaurus
4aeb0d19bd Singularity package: new version, legacy builds, and root permissions (#11094)
* Remove old Singularity versions, add version 3.1.1
* Recent versions of Singularity build with go rather than autotools:
  update dependencies and build logic
* Move old Singularity versions to new singularity-legacy package
  which uses the autotools build system
* Some binaries built by Singularity need to be run as root: include
  a script that the user can run after the Spack Singularity install
  to change these permissions.
* The Singularity go build expects to work with a custom stage
  directory relative to GOPATH: override the stage phase to create
  this expected path.
* Update Singularity install config to point to Spack-installed
  makesquashfs dependency
2019-05-03 10:27:13 +09:00
Chuck Atkins
f44443ed3a llvm: depend on python only when +python (#11348)
Based on the LLVM documentation [1], Python is used to run the automated
test suite. Therefore is it always a dependency for LLVM. However, if
build without Python (~python), we limit it to a build time dependency.

Note that py-lit is not added as a spack dependency even though it is
available as a spack package. This is because it is already included
in llvm and llvm is difficult to configure using an external py-lit
(several CMake variables to set correctly). Additionally, having
py-lit as a spack dependency adds Python as a runtime dependency
for llvm even though it is not required at runtime.

[1] https://llvm.org/docs/GettingStarted.html#requirements
2019-05-02 16:21:06 -04:00
Denis Davydov
5b82bf47af extend Version class so that 2.0 > 1.develop > 1.1 and develop > master > head > trunk > 9999 (#1983)
* extend Version class so that 2.0 > 1.develop > 1.1

* add concretization tests, with preferences and preferred version.

* add master, head, trunk as develop-like versions, develop > master > head > trunk

* update documentation on version comparison
2019-05-03 03:32:40 +09:00
Omar Padron
0bbd41c7f7
install spack under /opt/spack in docker images (#10969)
* install spack under /opt/spack
2019-05-02 12:05:42 -04:00
Levi Baber
9e72fc48c8
fix error when adding package to env in container (#11321) 2019-05-02 11:04:21 -05:00
Patrick Gartung
309122c329
Don't use buildcache to install patchelf (#11343) 2019-05-02 10:02:25 -05:00
Hans Pabst
0e9513be97 LIBXSMM: add version 1.11, update wrapper settings (#11317)
Remove makefile editing to set compiler wrappers (which was not
working) and instead set them as arguments to 'make'.
2019-05-02 08:45:00 +09:00
Simon Flood
ff2be5e866 R: add version 3.6.0 2019-05-02 08:34:00 +09:00
Daryl W. Grunau
7a3be1bf15 New package: py-pydv (#11313) 2019-05-02 08:28:21 +09:00
tcojean
68c4849f77 Ginkgo package: update to release 1.0.0 (#11312)
* Version 1.0.0 was released and the master branch tracks the
  latest release.
* Multiple issues with MacOS have been fixed. The static patch is
  now unneeded.
* Add support for building Ginkgo with the full Block Jacobi
  performance (compilation takes a long time).
* Do not build anything which is not useful for the installation.
  Namely, documentation, benchmarks, examples and tests.
2019-05-02 08:25:39 +09:00
Phil Carns
396955b9ba New package: libpmemobj-cpp (#11309) 2019-05-02 08:12:01 +09:00
Felix Mayr
c2e280b794 python: add versions 3.7.3, 3.5.7, and 3.4.10 (#11300) 2019-05-02 08:01:30 +09:00
Chuck Atkins
9f848205e4 mesa: re-written to new meson build system (#10482)
* mesa: re-writen to new meson build system

* xorg-server: Remove unneeded mesa dependency

* glx: provide the virtual GLX package

* Convert most "mesa" dependencies to use virtual gl and glx dependencies

* mesa: Switch to always building from the git repo instead of a tarball

* Use gl and glx version ranges instead of exact versions

* glx: provide a default package

* add auto to swr variant

* Revert "add auto to swr variant"

This reverts commit 2e7cd8a8aca07767c00657d0d09985ddd6306883.

* update mesa package to version 19.0

* set +glx by default only when running on linux

* fix style issues in geant4 package

* remove virtual package "egl"
2019-05-01 17:57:33 -05:00
Phil Carns
a698ac9711 add PMDK 1.6
- also remove superflous ncurses dependency for PMDK 1.5
2019-05-02 03:37:22 +09:00
Kelly (KT) Thompson
2e6eaa2c0a trilinos: add variant for ShyLU support (#11294) 2019-05-02 03:36:00 +09:00
Sean McGrath
a605fc7e06 ffmpeg package: add aom support (#11210)
* Add Aom package
* Add aom variant to ffmpeg package which controls whether to build
  with the Aom dependency
2019-05-02 03:33:03 +09:00
xfzhao
2a1ba0e142 Supernova package: add version 2.1.1 (#11285) 2019-05-01 09:56:53 +09:00
Francois Budin
b56e418dfe Add margo package and add rc1 tag for argobots package (#11281)
margo package is a required dependency for unifycr but the package
was not available in spack. margo requires a recent version of argobots
that has the ABT_SCHED_BASIC_WAIT scheduler (rc1 does while previously
available versions of this package in spack did not have it).
2019-05-01 09:47:34 +09:00
Francois Budin
52752efa4d veloc package: add version 1.1 and update master dependencies (#11270)
* Add version 1.1 and set it as preferred
* Add pdsh as a dependency for `master`
2019-05-01 09:44:51 +09:00
Francois Budin
e2825d0ad4 Darshan 3.1.7 and develop versions fpr darshan-runtime and darshan-util (#11269)
* Add version 3.1.7
* Add develop branch (git master)
2019-05-01 09:42:32 +09:00
Thomas Gruber
06ed77bdfa Lua: Fix unresolved symbols in shared library by linking with libdl.so (#11260)
The current lua package.py does not link with libdl.so, so you get
unresolved symbols while linking with lua. This PR adds libdl to fix
the issue.
2019-05-01 08:41:08 +09:00
Greg Becker
7b715564d0 openfoam-com package: build without kahip by default (#11259)
Kahip does not build with clang (conflicts('%clang') in kahip package.
Because of this, openfoam-com %clang fails concretization. Therefore,
this changes the default openfoam-com variant for kahip to False.
2019-05-01 08:26:54 +09:00
Tiziano Müller
d2786ec064 CP2K package: add versions and tests, adjust optimization flags (#11263)
* Remove -ffast-math optimization flag
* Add 'develop' version which points to git repo
* Depend on libint for all versions >= 3.0
* Build directory is different for versions >= 7 (including develop)
* Add "make test" as post install check
2019-05-01 04:52:13 +09:00
Todd Gamblin
8e5e36dc0b Fix spack flake8 to use Travis's target as base when needed 2019-05-01 04:44:02 +09:00
Jannek Squar
f41103770d OpenCV: New versions, adjust protobuf dependency (#11243)
* Add versions 3.4.4 through 4.1.0 and 4.1.0-openvino
* Add conflict for gcc version >= 7 when building with +cuda
* Later version of protobuf is required for later versions of OpenCV
* Explicitly remove protobuf dependency with CMake option when not
  building with +dnn
2019-05-01 03:37:47 +09:00
xfzhao
e10dd6f779 Masurca (#11286)
* py-pauvr:new package

* falcon-unzip: new package

* supernova: updating

* masurca: updating

* rm extra files

* modifying available versions and adding url

* fixing deleted supernova
2019-04-30 08:24:12 -05:00
Matthias Diener
c43296e00d git-lfs: add version 2.7.2 (#11311) 2019-04-30 10:20:03 +02:00
Denis Davydov
a11b252a1b remove myself from maintainers of some packages (#11319) 2019-04-30 10:16:53 +02:00
Chuck Atkins
d2a5a10f08 vtk: Use the vendored libharu (#11293)
VTK requires a patched libharu that is not maintained upstream
See https://github.com/libharu/libharu/pull/157
2019-04-30 10:07:29 +02:00
Xavier Delaruelle
1a920ee64f environment-modules: add version 4.2.4 (#11307) 2019-04-27 20:32:57 +02:00