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Author SHA1 Message Date
Michael Kuhn
b85a910463 rdma-core: Fix checksum for @17.1 (#9480) 2018-10-10 14:06:51 +02:00
Seth R. Johnson
8ab6539c0e Add important variants to MOAB and Geant4 (#9409) 
* Add option to disable threads for Geant4
* Add option to enable DagMC in MOAB
* Explicitly add OFF flag when threading is disabled
* Fix unintentional enabling of C++14 in Geant4
  The following always evaluated to True:
    'c++14' or 'c++1y' in spec:
 2018-10-09 17:05:49 -07:00
Dan Han
aede227580 matlab: new version (#9427) 2018-10-09 16:58:52 -07:00
Levi Baber
3e565a734a braker: add missing deps (#9468) 2018-10-09 16:55:28 -07:00
sknigh
03231a39db Added nlohmann-json v3.3.0 (#9463) 2018-10-09 16:54:59 -07:00
Justin Stanley
6c4e0b1bf1 sspace-standard: add perl-perl4-corelibs dep, fix perl scripts (#9473) 
perl scripts were pointing to /usr/bin/perl, changed to point to
the spack-installed perl
 2018-10-09 16:54:32 -07:00
Greg Becker
ca0d9ae7f0
Make builtin flag handlers available in package scope (#8668) 
* Push default flag handlers into module scope

* Preserve backwards compatibility of builtin flag handler names

Ensure Spack continues to work for packages using the `Package.env_flags` idiom and equivalent.

* update docs and tests to match

* Update packages to match new syntax
 2018-10-09 15:18:31 -07:00
Mark W. Krentel
54bd049d99 xerces-c: add variant for transcoder, rework config flags. (#9393) 
* xerces-c: Add variant for choice of transcoder (gnuiconv, iconv, icu,
  macos, windows).  It's important to specify a --enable-transcoder
  option on the configure line or else xerces may make a different
  choice when multiple transcoders are available.
* Pass the compile flags to configure.  For cflags and cxxflags, this is
  necessary to respect the value from the spack install line.
  Otherwise, xerces (and any autotools package) will choose a default
  value that overrides the spack compiler wrapper.
* Add xerces version 3.2.2.
* icu4c needs the --enable-rpath configure option on Darwin
 2018-10-09 15:12:34 -07:00
Dan Han
5cafe1b4e8 blastplus: newest version 2.7.1 (#9472) 2018-10-09 13:22:34 -07:00
Satish Balay
5e4264ed89
xsdk: reorder develop version statements (#9469) 2018-10-09 14:19:29 -05:00
Denis Davydov
ab099e9ba3 trilinos: extend TPetra explicit instantiations and fix missing Teuchos counterparts (#9448) 2018-10-09 12:07:13 -07:00
Chris Green
5ebdc6076f New package: pythia6 (#9340) 
Includes optional extra code for compatibility with Root.
 2018-10-09 11:56:43 -07:00
Satish Balay
9ee8a1055b
petsc: add petsc-3.10.2 (#9467) 2018-10-09 13:14:41 -05:00
Robert Pavel
9c221228ef Removed gtk dependency from Candle (#9451) 
After talks with candle dev, removed unsatisfiable conflict with
candle-benchmark and opencv by disabling gtk in the candle spec
 2018-10-09 11:38:54 -06:00
Levi Baber
f12b42e8e6
Autofact: new package (#9317) 
* autofact: new package

* autofact: typo

* autofact: syntax

* autofact: deps

* autofact: perl mods path

* autofact: edit->patch and script path
 2018-10-09 12:26:46 -05:00
Justin Stanley
817ee344c5 perl-perl4-corelibs: new package (#9459) 2018-10-09 09:17:21 -05:00
Ricardo Silva
36941ffb45 New package: tldd (#9434) 
* New package: tldd

* https://gitlab.com/miscripts/tldd

* Improvements

* make it prefetchable by specifying a hash based version
* specify the constraints on pstreams versions (from INSTALL)

* Improvements

* Make it a Makefile Package and only overwrite the install_targets
* Remove the URL as there's really no downloadable 'tar ball' version
 2018-10-09 09:15:42 -05:00
Justin Stanley
22a56d86ae energyplus: new package starting at 8.9.0 (#9262) 
* energyplus: new package starting at 8.9.0

* energyplus: fix misleading comment

* energyplus: remove redundant version url
 2018-10-09 08:45:13 -05:00
Pieter Ghysels
838337da37 STRUMPACK: new package (#9429) 
* Initial commit for new package STRUMPACK, a linear solver library.

* Update to STRUMPACK version 3.0.3.
This adds a check for OpenMP task priority support (since OpenMP 4.5)
 2018-10-09 08:44:49 -05:00
Justin Stanley
8f4123e564 r-proto: added 1.0.0 (#9456) 
* r-proto: added 1.0.0

* r-proto: reorder versions
 2018-10-09 08:44:17 -05:00
Justin Stanley
b17fb74e5f ant: add tested 1.10.0, switch build target (#9358) 2018-10-08 17:09:56 -05:00
Justin Stanley
80100ffc39 treesub: new package starting at 0.2 (#9361) 
* treesub: new package starting at 0.2

* treesub: fix ant build, add exec script

* treesub: use portable octal format

* treesub: add license header

not sure how it even went missing.
 2018-10-08 16:26:51 -05:00
Miles Perry
4e20b16dbe added list URL for r-rodbc (#9460) 2018-10-08 16:25:52 -05:00
Justin Stanley
b8e0d5824e r-edger: add r-rcpp dependency (#9457) 
* r-edger: add r-rcpp dependency

* r-edger: add r-rcpp to link deps
 2018-10-08 16:25:31 -05:00
Simon Flood
84046b79b2 New package: pplacer (#9112) 
* New package: pplacer

Simple package - copies files and directory out of a zip file

* Update package.py
 2018-10-08 16:02:12 -05:00
Justin Stanley
b2e255fe5a figtree: new package starting at 1.4.3 (#9359) 
* figtree: new package starting at 1.4.3

* figtree: add java dep

* figtree: use portable octal format

* figtree: remove boilerplate
 2018-10-08 16:00:21 -05:00
snehring
c379f4ee24 sspace-standard: adding threads variant to perl dependency (#9452) 2018-10-08 15:41:36 -05:00
Justin Stanley
b62571ecdf r-readxl: added 1.1.0 (#9454) 2018-10-08 15:40:45 -05:00
Strahinja Trecakov
cf52083b74 perl-module-build new version (#9404) 2018-10-08 09:12:13 +02:00
dorier
e51b48d9a1 Catalyst Package: made Python mandatory at build time (#9432) 
The build process of Catalyst requires Python at build time (see line 86) even when the +python variant is not selected.
When the +python variant is selected, Python becomes required at build, link, and run time. There doesn't seem to be any restriction on the version of Python required when +python is not selected.
 2018-10-08 09:10:03 +02:00
dorier
baa664ffaa Fix: bug in VTK package (#9431) 
* Fix: bug in VTK package

Fix for issue 9423 (https://github.com/spack/spack/issues/9423): compilers other than clang don't have the `is_apple` property.

* VTK package: removing trailing whitespace

So flake8 stops complaining.
 2018-10-08 09:08:50 +02:00
Matthias Wolf
c0249eddb1 py-pyspark: new package (#9419) 2018-10-08 09:03:31 +02:00
Jon Rood
2e11d5914c Update HYPRE with version 2.15.0. (#9443) 2018-10-08 08:58:02 +02:00
DDevHan
75fe3a5436 Pacvim new (#9273) 
* pacvim: new package

* pacvim: removed fixme's

* pacvim: added full docstring

* pacvim: fixing docstring
 2018-10-05 12:07:22 -05:00
Matthias Wolf
d77ed45bfe py-jprops: new package @ 1.0.2 (#9417) 2018-10-05 10:58:49 -05:00
DDevHan
b8fcc4d230 Canu-Updated to lastest version:1.7.1 (#9413) 
* Canu-Updated to lastest version:1.7.1

* canu: added sha256 hash as comment above version

* canu: changed to sha256
 2018-10-05 10:56:03 -05:00
Reid Priedhorsky
7c35c70217 add Charliecloud 0.9.2 and 0.9.3 (#9441) 2018-10-05 11:16:07 +02:00
Justin Stanley
011ad24950 salmon: remove static link to libstdc++ (#9343) 2018-10-04 20:57:33 -05:00
Patrick Gartung
d981f28a80 Davix version update (#9304) 
* Replace old version with new version
* Remove patch only needed by CMS
 2018-10-04 16:12:53 -07:00
Patrick Gartung
5a20217a54 VecGeom: add versions and cxxstd variant (#9303) 2018-10-04 16:11:28 -07:00
Patrick Gartung
9b5f3d77f3 Valgrind: add ubsan and only64bit variants. (#9302) 
* Add conflict for +ubsan when building with clang on MacOS
* only64bit is enabled by default
 2018-10-04 16:06:10 -07:00
Matthias Wolf
2b3e7dbd93 py-py4j: add version 0.10.6 (#9418) 2018-10-04 15:32:54 -05:00
dorier
872e3c76f6 Package mesa: added dependency on zlib (#9424) 2018-10-03 19:48:42 -07:00
Denis Davydov
600acbbe66 python: add details on missing library to error message (#9332) 
When a library cannot be found, the exception now includes the name
of the library that was requested.
 2018-10-03 19:46:14 -07:00
Cody Balos
219846684b SUNDIALS: add new versions (#9401) 
* Add SUNDIALS 3.2.0 and 4.0.0-dev.2 releases.
* Update CMake dependency version constraints
* Update CMake args to find raja dependency
 2018-10-03 19:37:54 -07:00
Daryl W. Grunau
7f4b436ab6 ParaView: add versions (#9428) 2018-10-03 19:34:38 -07:00
Geoffrey Oxberry
98cdd616ca py-flake8: enum34 not required for python 3.4 and up (#9415) 
py-flake8 only requires py-enum34 when using a python version
earlier than 3.4
 2018-10-03 19:33:22 -07:00
Robert Pavel
479e71a832 Specified Maximum Matplotlib for Candle (#9425) 
Specifying that Candle-benchmarks requires matplotlib 2.x due to
matplotlib 3.x requiring python 3.x
 2018-10-03 11:47:17 -06:00
Valentin Clement (バレンタイン クレメン)
a97e9cb282 CLAW Compiler: Add Spack Package (#9405) 2018-10-03 17:17:13 +02:00
Matthias Wolf
fe60b2f6de py-progress: new package. (#9420) 2018-10-03 17:12:30 +02:00
Christoph Junghans
63844a97f8
openmc: version bump (#7974) 
* openmc: version bump

* s/mit-crpg/openmc-dev/
 2018-10-03 09:12:14 -06:00
Satish Balay
297f8537b5
trilinos: superlu_dist patch is now in trilinos develop - so removing it (#9422) 
https://github.com/trilinos/Trilinos/pull/3209
 2018-10-03 09:52:12 -05:00
Satish Balay
846e2c7ca9
PETSc: configure use CFLAGS,FFLAGS,CXXFLAGS from spack (#9383) 2018-10-03 08:19:43 -05:00
alcharal
c46a7a61f0 Abyss: added variant maxk (#9280) 2018-10-02 17:27:25 -07:00
dorier
8f29fbb605 Adding new versions to Catalyst package (#9267) 2018-10-02 17:25:56 -07:00
Mario Melara
eff3ad3346 Spades: add version 3.12 (#9286) 2018-10-02 17:24:39 -07:00
sknigh
d056427a00 Added cudnn 7.3 (#9400) 2018-10-02 17:24:13 -07:00
sknigh
89ccaa2472 Added perl 5.28 (#9379) 2018-10-02 15:48:28 -07:00
Abhinav Bhatele
0352b4808e [WIP] Release 2.0 of the ECP Proxy Apps suite (#9368) 
* Release 2.0 of the ECP Proxy Apps suite

* update laghos version

* make install dir structure consistent across all ecp-proxy-apps

* minor

* update macsio version
 2018-10-02 16:35:41 -06:00
Gregory Lee
676b3b0364 added py-matplotlib version 3.0.0 (#9335) 2018-10-02 15:35:06 -07:00
Abhinav Bhatele
d962e65cf2 PICSAR: new package (#9411) 2018-10-02 16:04:49 -06:00
rvinaybharadwaj
46a9121f00 Spackage for Thornado-mini (#9363) 2018-10-02 16:03:58 -06:00
Abhinav Bhatele
f6fb176d10 PICSARlite: actually builds PICSARlite now instead of PICSAR (#9410) 
also removed variants which shouldn't be there
 2018-10-02 15:46:31 -06:00
Abhinav Bhatele
1ba061f6ec MACSio: update package (#9412) 2018-10-02 15:46:09 -06:00
David Orman
e8af5847a0 Intel parallel studio 2019 cluster edition (#9295) 
* untracking file

* intel-parallel-studio: added 2019 cluster edition and checksum
 2018-10-02 13:04:57 -05:00
Abhinav Bhatele
25be114f75 new package: TraceR (#9298) 2018-10-02 11:04:11 -07:00
Justin Stanley
4e031d25a4 raxml: build all matching variants (#9377) 2018-10-02 09:20:47 -05:00
Prasanna Balaprakash
658e42ae3f ytopt: new package (#9403) 2018-10-01 23:16:32 -07:00
Geoff Womeldorff
922c1a5652 kokkos: bugfix for case wherein kokkos backends enabled in spack but not parsed correctly (#9396) 2018-10-01 17:36:55 -06:00
Matthias Diener
f38bfde6f3 nvptx-tools: add new package (#9378) 
* nvptx-tools: add new package

* Update package.py

* Update package.py
 2018-10-01 16:55:41 -05:00
Ricardo Silva
d031bd7461 patching p4est to select the proper openmp lib (#9381) 
* patching p4est to select the proper openmp lib

* For when compiler.openmp_flag isn't supported

* authored by @nrichart, I only tested it

* Adding openmp variant

Signed-off-by: Ricardo Silva <ricardo.silva@epfl.ch>
 2018-10-01 22:43:40 +02:00
Geoff Womeldorff
57236fa2ce kokkos: add serial backend explicitly. add kokkos options and kokkos cuda options. (#9276) 2018-10-01 10:24:43 -06:00
Justin Stanley
691a19226c redundans: add py-numpy dep, snap-berkeley version constraint (#9354) 2018-10-01 05:54:50 -05:00
Abhinav Bhatele
a6ab5edea6 Laghos: add version 1.1 (#9389) 2018-09-30 05:38:52 -06:00
Justin Stanley
bf757bd231 lighttpd: install to bin vs sbin (#9337) 2018-09-28 18:38:51 -07:00
Justin Stanley
ad13a9989f gsnap: add 2018-07-04 (#9356) 2018-09-28 17:07:08 -05:00
Levi Baber
017199b5d6
py-flake8-polyfill: removing unnecessary build_args (#9284) 2018-09-28 14:49:45 -05:00
Levi Baber
6ac167a891
libsigcpp: add a real homepage (#9282) 2018-09-28 14:48:31 -05:00
Aronnax, Miles V. [ISU/LAS]
e9863f56f3 Gapfiller 1.10 f01 (#9163) 
* GapFiller.pl fixes: line endings, env perl, convert to Getopt::Std, requires perl with threads.

* GapFiller.pl fixed source path, install location.

* Fixed missing space.
 2018-09-28 14:45:54 -05:00
Justin Stanley
d6daa8fab5 perl-dbd-sqlite: new package starting at 1.56 (#9338) 2018-09-28 14:08:14 -05:00
Levi Baber
6d0b3f0e71
r-biocparallel: new link dependency added in last version (#9274) 2018-09-28 13:56:46 -05:00
Levi Baber
5d3fb74e24
r-misc3d: add a real homepage (#9283) 2018-09-28 13:54:50 -05:00
Justin Stanley
43ae3bd2c9 perl-cgi: new package starting at 4.37 (#9339) 2018-09-28 13:53:40 -05:00
Justin Stanley
a5d6f79fe0 r-rots: fix package type (#9344) 2018-09-28 13:11:09 -05:00
Serban Maerean
2ac648407e Add PETSc 3.10.1 to PETSc's spackage file (#9382) 
* Add version 3.10.1 to the PETSc spackage file.
* Makefile changes required for building PETSc native tests with the XL compiler.
 2018-09-28 10:46:21 -07:00
snehring
3c713661b8 gmap-gsnap: set default value for simd variant (#9366) 
Also add zlib/bzip2 dependencies.
 2018-09-28 10:41:41 -07:00
Mark W. Krentel
f641a72a8b libpfm4: add version and compiler flags (#9291) 
Set default optimization level (-O2) if not specified in cflags.
 2018-09-28 10:36:27 -07:00
Denis Davydov
2cd7783e9e mpich: fix 3.2 patch (#9330) 
patch does not apply to 3.2.1 (released in late 2017).
Given that it fixes the issue discussed in May 2016, most likely
it shall apply only to 3.2
 2018-09-28 08:18:55 -05:00
Eric Müller
1e75aef0e9 Bazel: update env handling, add versions (#9369) 
Building bazel yielded errors since commit cd9691d. The first commit
fixes the build for older bazel versions, the second commit adds new
versions and ports the patches to these versions.
 2018-09-27 19:37:31 -07:00
sknigh
bd801da1bf Set libs property for tcl and tk (#9372) 2018-09-27 19:34:18 -07:00
sknigh
496bc3cd23 Added legacylaunchers variant to openmpi (#9336) 
Lots of programs still have mpiexec/mpirun baked in.
 2018-09-27 19:29:15 -07:00
sknigh
5047d86732 yaml-cpp: conflict with gcc 4.7 instead of 4.8 (#9371) 
4.8 has c++11 support, and RHEL/Centos 7 still use 4.8.5
 2018-09-27 13:37:36 -07:00
sknigh
7db31c6671 Added slurm 17.11 and 18.08 (#9345) 2018-09-27 13:34:41 -07:00
sknigh
2155163a37 Added Cuda 10 (#9310) 2018-09-27 13:33:53 -07:00
Abhinav Bhatele
37918e0536 ember: put all READMEs into docs and add executables in bin (#9362) 2018-09-27 05:49:15 -06:00
dorier
9e448d4c4f py-pybind11: add version 2.2.4 (#9355) 2018-09-26 19:19:46 -07:00
Denis Davydov
12c59c5b55 arpack-ng: add version 3.6.3 (#9331) 2018-09-26 19:12:41 -07:00
Justin Stanley
e41677b560 new package: r-processx (#9342) 2018-09-26 19:12:06 -07:00
Justin Stanley
bf4ac40ade new package: r-ps (#9341) 2018-09-26 19:08:55 -07:00
Justin Stanley
b35dccf875 paml: remove old version, added 4.9h (#9360) 2018-09-26 19:03:35 -07:00