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1861 commits

Author SHA1 Message Date
Denis Davydov
1b553f2b21 dealii: fix directory structure 2016-07-11 13:21:16 +02:00
Denis Davydov
f14cd67446 dealii: flake8 fixes 2016-07-11 10:56:57 +02:00
Denis Davydov
84afaf385f dealii: run tests only when self.run_tests=true 2016-07-11 10:22:29 +02:00
Denis Davydov
1cc6e42682 dealii: add petsc/slepc 3.7 support 2016-07-11 10:20:15 +02:00
Todd Gamblin
b0f4052bd8 Merge pull request #1169 from davydden/feature/install_argument_tests_petsc_fixes 
--run-tests install argument and petsc fixes
 2016-07-09 12:10:16 -07:00
Denis Davydov
e482994a15 petsc: add -lm when building example 2016-07-09 08:12:34 +02:00
Erik Schnetter
c8137194f0 Update Cereal to 1.2.0 2016-07-08 15:20:09 -04:00
Todd Gamblin
f04258eb29 Merge pull request #1192 from SteVwonder/develop 
docbook-xml: replace 'cp -t' with install_tree
 2016-07-08 11:09:41 -07:00
Todd Gamblin
1fa67e458c Merge pull request #1194 from SteVwonder/lua-fix 
lua: switch self.version[:2] to .up_to(2)
 2016-07-08 11:09:18 -07:00
Stephen Herbein
bb8a8ecda3 json-c: fix build by running serially 2016-07-08 10:39:47 -07:00
Stephen Herbein
1a1bf31032 lua: switch self.version[:2] to .up_to(2) 
Previous package would not install correctly, would throw:
return os.path.join('share', 'lua', '%d.%d' % self.version[:2])
TypeError: %d format: a number is required, not Version
 2016-07-07 18:58:52 -07:00
Stephen Herbein
1b53452618 docbook-xml: replace 'cp -t' with install_tree 
'-t' is not supported by the default cp on Mac OS X

replace with install/install_tree

cannot just use install_tree since shutil.copytree insists that the dst
directory not exist
 2016-07-07 17:41:53 -07:00
Todd Gamblin
6bb31a9a4c Merge pull request #1175 from davydden/pkg/arpack-3.4.0 
Pkg/arpack 3.4.0
 2016-07-06 14:45:21 -07:00
Todd Gamblin
91da3d8e64 Merge pull request #1174 from LLNL/bugfix/github-1172-suite-sparse 
Bugfix/GitHub 1172 suite sparse
 2016-07-06 14:35:59 -07:00
Todd Gamblin
c6e89d9283 Merge pull request #1180 from davydden/pkg/oce_update_and_fix 
oce: add 0.17.2; fix running tests
 2016-07-06 14:27:05 -07:00
Denis Davydov
14cef6eab8 oce: flake8 fixes 2016-07-06 22:51:20 +02:00
Denis Davydov
c096bb332a petsc: fix unit tests 2016-07-06 22:45:43 +02:00
Greg Lee
3df0f1902d clean up suitesparse deps 2016-07-06 12:15:20 -07:00
Greg Lee
4e27d91351 flake 8 fixes 2016-07-06 11:51:32 -07:00
Denis Davydov
57eaea2e8c oce: add 0.17.2; fix running tests 2016-07-06 20:35:59 +02:00
Paul Hopkins
61fe89bda0 Add ucs4 unicode variant to Python package 2016-07-06 18:29:54 +01:00
Denis Davydov
3d755a148b arpack-ng: fix binaries for macOS 2016-07-06 18:30:38 +02:00
Denis Davydov
c8fc56686c arpack-ng: fix corrupted parpack_cmake.patch 2016-07-06 13:42:59 +02:00
Denis Davydov
63e45c586c arpack-ng: flake8 fixes and minor update of incode comments 2016-07-06 13:27:02 +02:00
Denis Davydov
a47b3ba01b arpack-ng: use spec['mpi'].mpif77 2016-07-06 13:23:51 +02:00
Denis Davydov
f5f7abd71f arpack-ng: add 3.4.0 with cmake build 2016-07-06 12:59:42 +02:00
Greg Lee
4c063c6055 kludge to get suite-sparse-4.5.1 to link with -lstdc++ 2016-07-05 13:48:32 -07:00
Greg Lee
976b2b4d25 added suitesparse version 4.5.3 2016-07-05 13:45:22 -07:00
Erik Schnetter
79b3ef0362 Don't enforce hdf5~mpi 2016-07-05 10:58:11 -04:00
Todd Gamblin
d687e332ad Fix compile bugs for gcc on Mac OS X with macports. 
- add macports to things that are cleaned out of the environment.
- linker incompatibilities cause issues with packages like OpenSSL.
- also clean up NOQA stuff in OpenSSL
 2016-07-04 22:59:02 -07:00
Todd Gamblin
f2a692c515 Merge pull request #1163 from epfl-scitas/fixes/reserved_name_for_system_packages 
fixes : reserved name for system packages
 2016-07-04 21:25:50 -07:00
Todd Gamblin
d166c04db5 Merge pull request #1166 from glennpj/rstan 
New package - RStan
 2016-07-04 21:23:10 -07:00
Todd Gamblin
1de675e976 Merge pull request #1165 from robertdfrench/ruby-needs-ffi-zlib 
Ruby 2.2.0 needs ffi and zlib
 2016-07-04 21:22:38 -07:00
Glenn Johnson
d5abcc5c88 Fix flake errors 2016-07-04 17:55:10 -05:00
Glenn Johnson
519b760222 New package - RStan 
This PR creates the RStan package and its dependencies.
 2016-07-04 17:30:05 -05:00
Robert D. French
53bbbfbe21 Require libffi, zlib; Make Openssl, readline optional 2016-07-04 15:21:13 -04:00
Nicolas
85982017b6 Revert "Corrected the shared libraries and tests in mumps package" 2016-07-04 18:19:09 +02:00
alalazo
861f174f66 qa : fixed flake8 issues 2016-07-04 10:26:32 +02:00
alalazo
3e8391458c openssl : changed tag for system reserved versions fixes #1150 2016-07-04 10:25:20 +02:00
Todd Gamblin
890df7153a Merge branch 'efischer/160311-StagedPackage' of https://github.com/citibeth/spack into citibeth-efischer/160311-StagedPackage 2016-07-04 00:27:32 -07:00
Glenn Johnson
729f23b432 Use Executable to set script 
Use `Executable("./install.sh")` to set `install_script`. This allows it
to work when the current directory is not on the PATH.
 2016-07-01 22:13:40 -05:00
Tzanio Kolev
137db14b75 Update package.py 2016-06-30 15:40:02 -07:00
Tzanio
d3b0cb56b7 Updating MFEM package with v3.2 info. 2016-06-30 15:23:30 -07:00
Elizabeth Fischer
50ac98bc04 Merge remote-tracking branch 'upstream/develop' into efischer/160630-StagedPackage 
# Conflicts:
#	lib/spack/docs/packaging_guide.rst
#	lib/spack/spack/package.py

Mostly minor/formatting issues in lib/spack/spack/package.py (the heavyweight merge was already done recently).  Only one serious issue: it looks like the feature branch had accidentally deleted the line `spack.hooks.post_install(self)`.  This got added back in from develop.
 2016-06-30 09:13:24 -04:00
Todd Gamblin
a7b8cb6901 Merge pull request #1145 from davydden/pkg/petsc_tests 
petsc: run a test
 2016-06-30 01:58:35 -07:00
Denis Davydov
6f4b0e9bda petsc: fix flake8 and ~mpi case in tests 2016-06-30 08:22:01 +02:00
Denis Davydov
37728afada petsc: run a test 2016-06-30 00:19:50 +02:00
Adam J. Stewart
2fcaa011ce Add py-restview package 2016-06-29 12:57:58 -05:00
Todd Gamblin
7df89896f4 Merge pull request #1113 from davydden/octave_extensions 
Octave extensions
 2016-06-29 00:38:05 -07:00
Todd Gamblin
0fd58fb585 Merge pull request #1133 from davydden/pkg/dealii_fix_tests 
dealii: run more unit tests when building @dev
 2016-06-28 10:02:43 -07:00