Commit graph

15294 commits

Author SHA1 Message Date
Adam J. Stewart
8748160984
GMT: add 6.0.0 (#15785) 2020-03-31 15:44:17 -05:00
Adam J. Stewart
25a65638ff
autoconf-archive: add new package (#15782) 2020-03-31 13:02:20 -05:00
Adam J. Stewart
663c3d21b5
JasPer: add 2.0.16 (#15781) 2020-03-31 12:08:26 -05:00
Massimiliano Culpo
7357b7023e
Update link for codecov's browser extensions (#15779) 2020-03-31 09:49:25 -05:00
Ben Morgan
77e1384902
geant4: new version 10.6 plus simplifications (#15447)
* geant4: new version 10.6 plus simplifications

Add new 10.6.0 release, migrating download of source to use Geant4's
public release repo on CERN GitLab. Change versioning scheme to use
clearer and standard semantic scheme.

Update geant4-data and g4XXX data packages with new versions. Migrate
geant4-data as a BundlePackage of the g4XXX packages, installing links
to each under a single directory under share for geant4-data. Ensure
each g4XXX package exports the environment variable pointing to its
location expected by Geant4.

Remove "data" variant from Geant4 package and always use geant4-data.

Simplify cxxstd variant transport to dependencies.

* g4<DATA>: Use self to resolve correct prefix

* geant4, data: Fix flake8 errors

* g4photonevaporation: flake8 fix

* geant4: vecgeom version depends_on

Geant4 major.minor versions have specific dependencies on vecgeom
versions. Add missing vecgeom version for geant4 10.5, and match
version requirements for vecgeom in geant4 depends_on.

* geant4: c++17 patch specific for 10.4.3

* geant4: simplify geant4-data setup

* geant4: Use new define_from_variant function

* geant4: fix flake8 errors
2020-03-31 09:54:31 +01:00
Toyohisa Kameyama
628516c761
ppOpen-APPL/FVM: new package. (#15772)
* ppOpen-APPL/FVM: new package.

* copy_tree -> install_tree.
2020-03-30 23:02:14 -05:00
Satish Balay
864960937d
superlu-dist: add new version 6.3.0 (#15766) 2020-03-30 19:52:31 -05:00
Ryan Mast
8bc6b290e5
helics: add new package (#15763)
* helics: add new package

* Remove FIXME boilerplate

* Use open @master: verison range for git dependency and remove mpi fix branch version

* Add blank line after spack import
2020-03-30 19:50:53 -05:00
Satish Balay
a96b742797
Balay/petsc 3.13.0 (#15767)
* petsc: add 3.13.0 (using petsc-lite) and 3.12.5

* petsc@3.13.0: update hdf5 and superlu-dist dependencies

* flake8 fix

* fixes for comments

Co-authored-by: Jed Brown <jed@jedbrown.org>
2020-03-30 19:50:29 -05:00
Adam J. Stewart
3c18d2a0e8
py-torch: make sure unit tests are registered (#15765) 2020-03-30 17:44:58 -05:00
Axel Huebl
3f50b9e08d
CUDA 10.1+ supports ICC 19.0 (#15764)
Fix the CUDA-ICC conflict check.
Simplify the XL 17 check.
2020-03-30 16:24:05 -05:00
Adam J. Stewart
ccc7c9b86d
py-horovod: fix compilation of ~cuda (#15719)
* py-horovod: fix compilation of ~cuda

* Rewrite py-horovod with only 3 variants

* Add upstream patch to workaround compilation issue
2020-03-30 16:09:17 -05:00
Andrew W Elble
6747ecde16
py-onnx: depends on cmake >= 3.1 (#15762)
* py-onnx: depends on cmake >= 3.1

* Update var/spack/repos/builtin/packages/py-onnx/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-30 14:58:57 -05:00
Amjad Kotobi
0c7fff6065
Update git version to 2.26.0 (#15756)
* Update git version to 2.26.0

* Fix1
2020-03-30 11:56:40 -05:00
Robert Pavel
8d1e88658d
Aded Option to Disable Shared Lua library Generation (#15758)
* Aded Option to Disable Shared Lua library

Added option to disable generation of shared object library for lua to
avoid build issues on static only platforms

* Fixed Flake8 Issue with Lua Spackage

Fixed indentation issue with lua spackage
2020-03-30 11:56:23 -05:00
Hadrien G
abdada03a8
Add ACTS v0.20 and take move to GitHub into account (#15757) 2020-03-30 16:48:36 +01:00
Fabian Brandt
605b7b5d23
New package: libnetworkit (#15714)
* New package libnetworkit

* Fixed artificial dependency restriction
2020-03-30 08:17:21 -05:00
Carson Woods
e9d573d110
package: add additional configuration options to lmod (#15682)
* Add further configuration options

* Convert auto-swap to auto_swap. Might eventually switch to key-value pair instead.
2020-03-30 08:14:07 -05:00
Carson Woods
05b7ec48c5
Add additional config options to gdb (#15754) 2020-03-29 23:05:24 -05:00
Carson Woods
3cbc26cfa6
Add additional configuration options for binutils (#15753) 2020-03-29 23:05:11 -05:00
Todd Gamblin
3310eaab99
spack-python should exec spack python (#15738)
The current implementation of `spack-python` will leave an extra shell
around while it runs.  That shell should really replace itself with
spack.

- [x] add exec to spack-python script
2020-03-29 19:38:15 -07:00
Adam J. Stewart
757d768a07
py-mayavi: add new package (#15751) 2020-03-29 21:11:13 -05:00
Adam J. Stewart
7bed5e7c1a
py-envisage: add new package (#15748) 2020-03-29 20:41:24 -05:00
Adam J. Stewart
0372582bf0
py-apptools: add new package (#15747) 2020-03-29 20:08:52 -05:00
Carson Woods
61c1322430
new package: intel-mpi-benchmarks (#15745)
* Add initial attempt at intel-mpi-benchmarks package

* Add more checksummed versions

* Changes to how makefile is handled

* First working install version. Needs tuning to support building specific benchmarks

* Add variant for building specific benchmarks rather than all of them

* Minor syntax change
2020-03-29 19:46:16 -05:00
Adam J. Stewart
17cd359ddf
py-traitsui: add new package (#15744) 2020-03-29 19:38:02 -05:00
Adam J. Stewart
f1aab835fe
CitcomS: add maintainer, master version, python dep (#15742) 2020-03-29 17:23:21 -05:00
Adam J. Stewart
4287d2290c
py-pyface: add new package (#15743) 2020-03-29 17:22:24 -05:00
Adam J. Stewart
df4e89770a
py-traits: add new package (#15741) 2020-03-29 16:34:18 -05:00
Jean-Paul Pelteret
4b3b023284
deal.II: Update dependencies and fix target for vectorisation (#15731)
* Update ADOL-C homepage url

* Update SymEngine to v0.6

* deal.II: Add code to add target vectorisation flags
2020-03-29 10:56:15 -05:00
Adam J. Stewart
c3d0973c3e
motif: add pkgconfig dependency (#15736) 2020-03-29 10:55:57 -05:00
Patrick Gartung
cbcac72254
Buildcache keys command speed up (#15727)
* Limit the spidering to depth=0 for keys

* depth=0 is default argument
2020-03-28 16:49:34 -05:00
Andrew W Elble
beaa4fbe3c
New package: gdrcopy (#15732)
* New package: gdrcopy

provides the userspace libraries for gdrcopy.

* Update var/spack/repos/builtin/packages/gdrcopy/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-28 16:44:23 -05:00
Daniele Cesarini
ddccad14c9
XIOS: add new versions (#15728)
* XIOS: add new versions

Patch has been removed because it was not applied to any previously
existing versions and it actually breaks the new versions added by this
PR.

* Sort versions from newest to oldest
2020-03-28 15:49:21 -05:00
Tom Scogland
a3e1b2bd58
llvm: libomptarget support (#14060)
This allows the llvm build to support:

* clang cuda
* libomptarget for:
  * current host
  * cuda
* bitcode compilation of libomptarget device runtime for inlining by 
  bootstrapping libomptarget
* split dwarf information support as an option for debug builds, if you need a
  debug build, for the love of all that's good in the universe use this flag
* adds necessary dependencies for shared library builds and libomp and
  libomp target to build correctly
* new version of z3 to make it sufficient to build recent llvm

The actual change is much smaller than the diff, this is because it's been formatted with black.  I realize this kinda sucks right now, but I'm hoping it will make future updates here less painful.
2020-03-28 13:20:06 -07:00
Kai Germaschewski
f3c2ebbfb8
fix gcc@8.4.0 build (#15729)
the gcc package.py includes patches for a sanitizer related bug that look
like they've been fixed in gcc 8.4.0, which caused `spack install` to fail.

This PR excludes patching gcc >= 8.4.0 and < 9.0.0.
2020-03-28 13:06:17 -05:00
Amjad Kotobi
c1d111af74
Add package swiftclient (#15700)
* Add package swiftclient

* Fix on url

* Package name changed to py-python-swiftclient and changes on dependencies
2020-03-28 12:14:05 -05:00
iarspider
6969526e0f
py-statsmodels: update to 0.102 and fix dependencies (#15708)
* py-statsmodels: update to 0.102 and fix dependencies

* Update var/spack/repos/builtin/packages/py-statsmodels/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-28 12:13:47 -05:00
Daryl W. Grunau
8beeeeb74c
new package ddd (#15717)
* new package ddd

* mitigate build/installs on case-insensitive filesystems

* add missing variants

* flake8 fixes

* flake8: E124 closing bracket does not match visual indentation

Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2020-03-28 12:12:49 -05:00
iarspider
33f424ff1d
Update URL for new py2neo versions (#15324)
* Update URL for new py2neo versions

* Use pypi for py-py2neo

* Add version 4.3.0

* Update py2neo dependencies

* Apply suggestions from code review

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-28 09:15:28 -05:00
Christoph Junghans
0b1c0bdd6e
xsbench: fix build of v19 (#15715)
* xsbench: fix build of v19

* Flake8
2020-03-28 09:11:37 -05:00
iarspider
27e4a4750d
Hack to select iconv implementation - libiconv vs. libc iconv (#15437)
(re-do of #15213 due to changes in gnupg recipe)
2020-03-28 09:10:31 -05:00
Veselin Dobrev
9f7255da71
mesa: re-introduce the libs property (#15716)
They were originally added in #8904 and later removed (why?) in #10482.
2020-03-28 11:30:05 +01:00
Adam J. Stewart
db67b78fb9
py-petastorm: add new package (#15722) 2020-03-28 00:30:50 -05:00
Adam J. Stewart
33b19e7bf0
py-diskcache: add new package (#15721) 2020-03-27 22:20:15 -05:00
Greg Sjaardema
6e49f5f0e5
netcdf-c: remove maxdims and maxvars variant (#15524)
* NETCDF: Remove maxdims maxvars variant

I'm not sure of the correct protocol to do this, so decided to make a stab and hopefully it works or I'm told the correct way...

The `maxdims` and `maxvars` variants for the NetCDF package were, to the best of my knowledge, only ever used for the Exodus library in the SEACAS package.  In versions of NetCDF prior to 4.4.0, Exodus required that the `NC_MAX_DIMS` and `NC_MAX_VARS` be increased over the default values.  This requirement was removed in 4.4.0 and later.

I do not know of any way to make a variant depend on the version and since the `maxdims` and `maxvars` variants are integer values and not boolean, then every build of NetCDF will have  these variants.  Typically `maxdims=1024 maxvars=8192` and the build will patch the `netcdf.h` include file for every build even though it is (almost) never needed. 

The SEACAS package has a NetCDF version requirement of >4.6.2, so it no longer specifies the `maxdims` or `maxvars` variant and I could find no other package in spack that uses this variant either, so removal should not break anything *in* spack.  However, there is no guarantee that some other external package doesn't use the variant, so I'm not sure of the correct way to remove the variant.  

For this PR, I simply removed the variants.  If there is a way to specify use of the variant tied to a specific version, I couldn't find it anywhere...

* Address review comment

Removed `is_integral` and `import numbers` since `is_integral` was only place it was used.

* Add blank line for flake8
2020-03-27 21:55:04 -05:00
Sinan
f6f5604927
Package/qgis add versions 3.10.4 3.12.1 (#15720)
* add latest versions

* order dependencies alphabetically

* flake8

Co-authored-by: Sinan81 <Sinan81@github>
2020-03-27 21:36:33 -05:00
Andrew W Elble
aed516ad56
TensorFlow: let install take care of the headers (#15718)
* TensorFlow: let install take care of the headers

we don't need to manually install them.

* no longer need to import glob
2020-03-27 21:35:13 -05:00
Sinan
829bfb5788
magma now extends CudaPackage class, taking care of the gcc conflicts (#14471)
* magma now extends CudaPackage class, taking care of the gcc conflicts

* enforce +cuda; thus cuda is dependency via CudaPackage class

* add conflict

* use cuda_arch to set GPU_TARGET build option

* get rid of unnecessary constraint

* flake8

* impose cuda version dependency found empirically

* add variant description

* add conflict

Co-authored-by: Sinan81 <Sinan81@github>
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-03-27 15:28:54 -05:00
Benjamin Fovet
d909c6d89d
Add new package CMinpack (#15606)
* Add new package CMinpack

* Add link to CMinpack PR#21
2020-03-27 14:29:49 -05:00