Commit graph

23323 commits

Author SHA1 Message Date
Seth R. Johnson
c255e91bba
gcc: support alternate mechanism for providing GCC rpaths (#26590)
* gcc: support runtime ability to not install spack rpaths

Fixes #26582 .

* gcc: Fix malformed specs file and add docs

The updated docs point out that the spack-modified GCC does *not*
follow the usual behavior of LD_RUN_PATH!

* gcc: fix bad rpath on macOS

This bug has been around since the beginning of the GCC package file:
the rpath command it generates for macOS writes a single (invalid)
rpath entry.

* gcc: only write rpaths for directories with shared libraries

The original lib64+lib was just a hack for "in case either has one" but
it's easy to tell whether either has libraries that can be directly
referenced.
2021-10-24 13:46:52 -04:00
Michael Kuhn
5a38165674
python: add 3.9.7, 3.8.12, 3.7.12 and 3.6.15 (#26914) 2021-10-24 11:43:39 -06:00
Morten Kristensen
9e11e62bca
py-vermin: add latest version 1.3.1 (#26920)
* py-vermin: add latest version 1.3.1

* Exclude line from Vermin since version is already being checked for

Vermin 1.3.1 finds that `encoding` kwarg of builtin `open()` requires Python 3+.
2021-10-24 16:49:05 +00:00
Mark Grondona
7fee7a7ce1
flux-core, -sched: update to latest versions, fix czmq build error (#26840)
* flux-core: fix compile error with czmq_containers
* Fix build with clang and gcc-11
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-10-23 17:37:44 +02:00
Jen Herting
7380161ea6
[py-emcee] added versions 3.0.2 and 3.1.1 (#26910)
* [py-emcee] added version 3.0.2

* [py-emcee] added version 3.1.1
2021-10-22 17:52:45 -06:00
eugeneswalker
0baec34dd7
E4S amd64 CI: add parsec (#26906) 2021-10-22 15:02:47 -06:00
Wouter Deconinck
d04b6e0fb5
acts: fix misspelled variant in depends_on (#26904)
Correct variant is plural `unit_tests`.
2021-10-22 12:19:51 -06:00
Harmen Stoppels
336c60c618
Document backport in py (#26897) 2021-10-22 19:14:35 +02:00
iarspider
0beb2e1ab2
Update py-aiohttp to 3.7.4 and py-chartdet to 4.0 (#26893)
* Update py-aiohttp to 3.7.4 and py-chartdet to 4.0

* Changes from review

* Update package.py

* Update var/spack/repos/builtin/packages/py-chardet/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-22 16:36:56 +00:00
iarspider
aa2bcbdc12
Use pypi for astroid; add versions 2.7.3 and 2.8.3; update dependencies (#26900)
* Use pypi for astroid; add versions 2.7.3 and 2.8.3; update dependencies

* py-six is not required for recent versions
2021-10-22 16:21:22 +00:00
Wouter Deconinck
d5880f3e7e
acts: add v14.0.0, v14.1.0 added "python" and "analysis" variants (#26657) 2021-10-22 17:43:35 +02:00
Robert Cimrman
2d41d6fc9e
py-sfepy: fix version 2021.3 tar.gz hash (#26890) 2021-10-22 10:23:58 -05:00
iarspider
8349a8ac60
Add py-asn1crypto@1.4.0 (#26895) 2021-10-22 10:22:30 -05:00
Manuela Kuhn
edc7341625
py-jupyterlab: add 3.1.18 and 3.2.1 (#26896) 2021-10-22 10:21:00 -05:00
Harmen Stoppels
609a42d63b
Shorten long shebangs only if the execute permission is set (#26899)
The OS should only interpret shebangs, if a file is executable. 

Thus, there should be no need to modify files where no execute bit is set. 

This solves issues that are e.g. encountered while packaging software as 
COVISE (https://github.com/hlrs-vis/covise), which includes example data
in Tecplot format. The sbang post-install hook is applied to every installed
file that starts with the two characters #!, but this fails on the binary Tecplot
files, as they happen to start with #!TDV. Decoding them with UTF-8 fails 
and an exception is thrown during post_install.

Co-authored-by: Martin Aumüller <aumuell@reserv.at>
2021-10-22 16:55:19 +02:00
Harmen Stoppels
d274769761
Backport #186 from py-py to fix macOS failures (#26653)
Backports the relevant bits of 0f77b6e66f
2021-10-22 13:52:46 +02:00
Harmen Stoppels
7cec6476c7
Remove hard-coded repository in centos6 unit test (#26885)
This makes it easier to run tests in a fork.
2021-10-22 10:24:03 +02:00
Doug Jacobsen
d1d0021647
Add GCS Bucket Mirrors (#26382)
This commit contains changes to support Google Cloud Storage 
buckets as mirrors, meant for hosting Spack build-caches. This 
feature is beneficial for folks that are running infrastructure on 
Google Cloud Platform. On public cloud systems, resources are
ephemeral and in many cases, installing compilers, MPI flavors,
and user packages from scratch takes up considerable time.

Giving users the ability to host a Spack mirror that can store build
caches in GCS buckets offers a clean solution for reducing
application rebuilds for Google Cloud infrastructure.

Co-authored-by: Joe Schoonover <joe@fluidnumerics.com>
2021-10-22 06:22:38 +02:00
Miroslav Stoyanov
d024faf044
heffte: new version with rocm (#26878) 2021-10-22 01:12:46 +00:00
Cameron Stanavige
8b8bec2179
scr/veloc: component releases (#26716)
* scr/veloc: component releases

Update the ECP-VeloC component packages in preparation for an
upcoming scr@3.0rc2 release.

All
- Add new release versions
- Add new `shared` variant for all components
- Add zlib link dependency to packages that were missing it
- Add maintainers
- Use self.define and self.define_from_variant to clean up cmake_args

axl
- Add independent vendor async support variants

rankstr
- Update older version sha that fails checksum on install

* Fix scr build error

Lock dependencies for scr@3.0rc1 to the versions released at the same
time.
2021-10-21 18:05:59 -07:00
Frank Willmore
a707bf345d
Add vacuumms package (#26838) 2021-10-21 17:12:08 -07:00
Robert Cimrman
9b28f99dd2
py-sfepy: add v2021.3 (#26865) 2021-10-21 23:50:38 +00:00
Manuela Kuhn
dbe1060420
py-neurokit2: add 0.1.4.1 (#26871)
* py-neurokit2: add 0.1.4.1

* Update var/spack/repos/builtin/packages/py-neurokit2/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-10-21 21:03:04 +00:00
eugeneswalker
3720d06e26
update E4S CI environments in preparation for 21.11 release (#26826)
* update E4S CI environments in preparation for 21.11 release

* e4s ci env: use clingo
2021-10-21 07:06:02 -07:00
Alexander Jaust
3176c6d860
[py-pyprecice] add v2.3.0.1 and fix hash of v2.2.1.1 (#26846) 2021-10-21 08:36:24 -05:00
Harmen Stoppels
3fa0654d0b
Make 'spack location -e' print the current env, and 'spack cd -e' go to the current env (#26654) 2021-10-21 13:19:48 +02:00
Eric Brugger
7f4bf2b2e1
vtk: make use of system GLEW dependent on osmesa being disabled. (#26764) 2021-10-21 09:53:13 +02:00
Vanessasaurus
3fe1785d33
libabigail: support source install (#26807)
Signed-off-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-10-21 09:22:22 +02:00
Wouter Deconinck
b65937e193
kassiopeia: add v3.8.0; new variants log4cxx, boost (#26841) 2021-10-21 07:44:57 +02:00
Alexander Jaust
97d244eb95
Make superlu-dist@7.1.0 request CMake 3.18.1 or newer (#26849) 2021-10-21 07:43:30 +02:00
Edward Hartnett
88591536c8
bacio: add v2.5.0 (#26851) 2021-10-21 07:41:47 +02:00
RichardABunt
f78e5383cc
arm-forge: add v21.1 (#26852) 2021-10-21 07:41:06 +02:00
downloadico
34d4091dbc
tramonto: add new package (#26858) 2021-10-21 07:18:33 +02:00
Stephen Hudson
afd4a72937
libEnsemble: add v0.8.0 (#26864) 2021-10-21 07:14:31 +02:00
Adam J. Stewart
342f89e277
py-numpy: add v1.21.3 (#26860) 2021-10-21 07:13:43 +02:00
Luc Berger
fc7178da17
Kokkos Kernels: updating maintainers and releases (#26855)
Adding the latests releases of Kokkos Kernels and the official maintainers for the package.
2021-10-20 12:19:56 -07:00
iarspider
594325ae09
Add py-sniffio version 1.2.0 and fix dependencies (#26847)
* Add py-sniffio version 1.2.0 and fix dependencies

* Changes from review
2021-10-20 16:30:26 +00:00
iarspider
fcff01aaaf
Update py-anyio to 3.3.4 (#26821)
* Update py-anyio to 3.3.4

* Changes from PR
2021-10-20 10:36:45 -05:00
Manuela Kuhn
b9c633d086
py-bids-validator: add 1.8.4 (#26844) 2021-10-20 10:33:27 -05:00
kwryankrattiger
45bea7cef7
Update ECP dav helper for propagating variants (#26175) 2021-10-20 11:22:07 -04:00
Martin Aumüller
029b47ad72
embree: add checksums for 3.12.2 & 3.13.1 (#26675)
Includes fix for for dependency ispc: fix build if cc -m32 is not possible
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-10-20 16:41:18 +02:00
Tamara Dahlgren
cc8b6ca69f
Add --preferred and --latest tospack checksum (#25830) 2021-10-20 13:38:55 +00:00
Adam J. Stewart
f184900b1a
damask: fix maintainer GitHub handle (#26829) 2021-10-20 14:57:13 +02:00
Wouter Deconinck
abc8cfe8fa
cppgsl: branch master is now main (#26834) 2021-10-20 14:56:01 +02:00
Massimiliano Culpo
56209cb114
Reduce verbosity of error messages when concretizing environments (#26843)
With this commit stacktraces of subprocesses are shown only if debug mode is active
2021-10-20 11:30:07 +00:00
Alexander Jaust
26b58701bc
Fix typo in repositories.rst (#26845) 2021-10-20 11:11:17 +00:00
Wouter Deconinck
42a6e1fcee
root: prepend dependent_spec.prefix.include to ROOT_INCLUDE_PATH (#26379)
Spack is not populating CPATH anymore (e3f97b37e6 (diff-259adc895c0b2e8fca42ffb99d8051eec0712c868d12d8da255d32f1663acdc7)), and downstream packages ([gaudi](1aa7758dbb/var/spack/repos/builtin/packages/gaudi/package.py (L116))) have alrady started to include this in their package.py files. Instead of propagating this to all downstream packages, it tries to address the issue at the source.
2021-10-20 09:15:14 +02:00
Massimiliano Culpo
1983d6d9d0
Pipelines: pin importlib-metadata and setuptools-scm versions (#26831)
This will hopefully be a hotfix for the issue with pipelines
in #26813 and #26820
2021-10-19 16:09:40 -07:00
Chris White
b7d94ebc4f
allow camp to use blt package (#26765) 2021-10-19 16:09:15 -07:00
Harmen Stoppels
1b634f05e0
A single process pool is not something to boast about (#26837) 2021-10-19 23:04:52 +00:00