Commit graph

29542 commits

Author SHA1 Message Date
Matthieu Dorier
9204bd6204
[ycsb] fixes build process and installation of YCSB (#32213)
* [ycsb] fixes build process and installation of YCSB

* [ycsb] fixing style

* [ycsb] removed extra newline
2022-08-25 11:26:08 -07:00
Wileam Y. Phan
b482c71b43
New package: glab (#32251) 2022-08-25 11:23:15 -07:00
robgics
ff2874333d
ddt: Initial commit (#32338)
* ddt: Initial commit

* ddt: Minor change to license date to appease the CI gods

* Get rid of unattractive extra line

* Switch to sha256 instead of md5
2022-08-25 11:03:07 -07:00
Robert Pavel
7214a438dc
Adding e3sm-kernels to Spack (#32341)
* Initial Draft of E3SM-Kernels Spackage

Initial draft of E3SM-Kernels. Currently no support for nested_loops due
to build system limitations

* Style Check and Fixed gfortran Check

Fixed style issues and changed gnu toolchain check to a gfortran check
due to hybrid compilers (e.g. clang+gfortran)

* Fixed Style Issues
2022-08-25 11:01:07 -07:00
Lucas Frérot
06ba4d5c28
lammps: added build dependency to py-setuptools (#32351)
LAMMPS' setup.py uses setuptools as of lammps/lammps@2ed8e5cf02
2022-08-25 10:40:07 -07:00
Mikael Simberg
1c3979dcfa
Add patch for missing template instantiation in pika 0.7.0 on macOS (#32370) 2022-08-25 11:30:00 -06:00
Melven Roehrig-Zoellner
f0925e1823
tixi: new variants (fortran,shared) (#32356)
* tixi: new variants (fortran,shared)

Since some tixi 3 versions, additional CMake flags are needed to build
tixi with shared libraries, respectively with Fortran support.

* tixi: fix style
2022-08-25 10:27:00 -07:00
snehring
ba87413eeb
snap-berkeley: update to version 2.0.1 (#32358) 2022-08-25 10:21:53 -07:00
Tyler Funnell
a4cbdba388
fish: adding v3.5.1 (#32362) 2022-08-25 10:18:39 -07:00
snehring
70388da974
libfabric: adding missing dep for opx fabric (#32377) 2022-08-25 10:10:30 -07:00
Sreenivasa Murthy Kolam
f0df4b653d
Changes for ROCm-5.2.0 changes and new recipe rocwmma (#31667)
* Changes for ROCm-5.2.0 changes and new recipe rocwmma

* modify the maintainers for hipify-clang

* address review comments

* update the rocwmma new recipe as per latest syntax

* fix style errors

* modify the patch file to provide the details about the patch

* fix style errors
2022-08-25 10:00:02 -07:00
Adam J. Stewart
507e06b5d2
Python: add new maintainer (#31755) 2022-08-25 09:46:09 -07:00
H. Joe Lee
c8f8b6957d
libfabric: Match main version. (#32342)
* Match main version.

`develop` no loger exists.

* Change develop to main.
2022-08-25 09:25:43 -07:00
robgics
10ac24874b
cplex: add package.py (#32337)
* cplex: add package.py

* Update var/spack/repos/builtin/packages/cplex/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-25 09:11:40 -07:00
Massimiliano Culpo
8654197c56
ASP-based solver: prevent the use of hashes that are not available (#32354)
fixes #32348
2022-08-25 17:55:58 +02:00
Dom Heinzeller
b332c1055c
Update ESMF: bug fix for esmf@8.3.0b09 with PIO (#32360) 2022-08-25 08:52:54 -07:00
Christian Mauch
7e0d8fce89
py-pynn: add version 0.10.0 (#32307) 2022-08-25 08:02:52 -07:00
Robert Cohn
c56abe4247
oneapi e4s: use require: to force gcc build for some packages (#32309) 2022-08-24 16:22:02 -04:00
Graeme A Stewart
ee02623171
whizard: Fix passing of build options, update versions (#32326)
* whizard: Fix passing of build options, update versions

The dependency of whizard on libtirpc is now correctly passed down as
an autotools option.

Update known versions of package with 3.0.2 and 3.0.3.

* Express path to headers via spec object methods
2022-08-24 06:58:48 -07:00
otsukay
6fa6b8a903
fujitsu-fftw: add option for enabling thread support (#31426)
Co-authored-by: Yuichi Otsuka <otsukay@riken.jp>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: otsukay <otsukay@users.noreply.github.com>
2022-08-24 11:36:14 +02:00
Atsushi Hori
14e99a1a5d
process-in-process: overhaul package recipe (#32347) 2022-08-24 11:35:08 +02:00
Massimiliano Culpo
e2468c8928
Allow default requirements in packages.yaml (#32260)
Allow users to express default requirements in packages.yaml. 

These requirements are overridden if more specific requirements
are present for a given package.
2022-08-24 09:33:55 +02:00
Ryan Marcellino
b4df535e8d
New package: py-mkdocs-material-extensions (#32334) 2022-08-23 23:29:56 -06:00
Ryan Marcellino
af4788fdef
New package: py-griffe and new build backend: py-pdm-pep517 (#32335)
* New package: py-griffe and new build backend: py-pdm-pep517

* add pdm to build backend docs
2022-08-23 23:23:23 -05:00
Cyrus Harrison
a2bdbfcd24
add conduit 0.8.4 release (#32343) 2022-08-23 21:33:49 -06:00
Ben Darwin
3fb7fdfc58
minc-toolkit: add runtime flex dependency (#32345)
Some programs such as `minccalc` depend on libfl.so at runtime.
2022-08-23 17:14:07 -06:00
Timothy Brown
7e87c208ba
[WRF] Version update to 4.4 (#32046)
* [WRF] Update to version 4.4.

* [WRF] Patches for v4.4.

* Fixing style.

* [@spackbot] updating style on behalf of t-brown
2022-08-23 13:47:23 -07:00
Jim Galarowicz
f8ae2ef8b4
Add new package for MUST runtime correctness analysis tool (#32329)
* Add new package for MUST runtime correctness analysis tool

* Fix encryption to SHA256 to fix with spack convention.
2022-08-23 20:43:55 +00:00
Ryan Marcellino
b238a9a457
New package: py-pyyaml-env-tag (#32333) 2022-08-23 12:55:53 -07:00
Harmen Stoppels
8af3743e91
Relative paths in default prefix_inspections start with ./ (#31867) 2022-08-23 12:54:12 -07:00
Harmen Stoppels
707a099b69
spack -e x config --scope=y add z add to scope (#31746)
* `spack -e x config --scope=y add z` add to scope

instead of to the environment file.
2022-08-23 12:52:34 -07:00
iarspider
2b680ae7b8
cpu-features: fix fetch failure (#32325)
* cpu-features: fix fetch failure

`master` branch was renamed to `main`

* Update var/spack/repos/builtin/packages/cpu-features/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-23 12:37:59 -07:00
Robert Cohn
6654d53611
intel-oneapi-compilers-classic: fix paths (#32305)
* Fix intel-oneapi-compilers-classic bin path

* Update package.py

* intel-oneapi-compilers-classic fix path

Co-authored-by: OfirGan <offirgan@gmail.com>
2022-08-23 12:14:24 -07:00
Ben Darwin
9b6b1a277d
minc-toolkit: add MINC_TOOLKIT environment variable at runtime (#32331)
This variable is used by some programs both internal and external to the
toolkit itself to discover shared objects, data, etc.
2022-08-23 11:03:12 -07:00
Toyohisa Kameyama
a08d6e790d
py-scipy: Fortran compiler specify code is change to setup.cfg for Fujitsu compiler (#32142)
* py-numpy: Change Fortran detect order for Fujitsu Compiler.

* create setup.cfg instead of command line.
2022-08-23 10:06:49 -07:00
Jen Herting
00feccde34
New package: py-loguru (#32074)
* [py-loguru] New package

* [py-loguru] Removed commented out line

* [py-loguru] Added types removed extra dependencies

* [py-loguru] missing windows dependency. listing windows as a conflict for now

* [py-loguru] depends on py-colorama when platform=windows

* [py-loguru] flake8

* [py-loguru] Import update

* [py-loguru]

- python is a runtime dependency
- setuptools is a build dependency

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-08-23 10:00:25 -07:00
Jen Herting
2c567edc1d
New package: py-python-javabridge (#32075)
* [py-python-javabridge] New package

* [py-python-javabridge] Added dependencies

* [py-python-javabridge] Added types

* [py-python-javabridge] py-setuptools and java are dependencies

* [py-python-javabridge] Import update

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-08-23 09:59:09 -07:00
Martin Pokorny
51293f3750
libfabric: new versions (#32083)
* libfabric: add new versions

1.15.0, 1.15.1, main (previously named master)

* Add OPX fabric option, with conflict for versions before v1.15.0

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-23 10:33:49 -06:00
kwryankrattiger
b7024010d3
SDK: Quick fix to allow SDK to build with HIP (#32321) 2022-08-23 07:09:56 -07:00
Simon Pintarelli
44258a7cce
meson: create unique names for build directory (#32062)
Taken from CMakePackage
2022-08-23 13:24:32 +02:00
Seth R. Johnson
0f25d3b219
Add cxxstd flag to googletest and default mock to true (#32171) 2022-08-23 13:05:03 +02:00
Seth R. Johnson
79a462c084
Geant4: update cmake defines and add support for nvhpc (#32185)
* geant4: use define function

* geant4: Change new feature from conflicts to when

* geant4: add support/conflicts for nvhpc

* fixup! geant4: add support/conflicts for nvhpc
2022-08-23 12:57:00 +02:00
Zhilin Zheng
b307d6e766
remove compiler optimize level limit of O2 for GCC (#32303)
gfortran can make it with O3, it might be better to remove this limitation.
2022-08-23 12:13:47 +02:00
Wouter Deconinck
abdecd2a9b
acts: add new dependency on vecmem and autodiff (#26790)
Co-authored-by: Hadrien G. <knights_of_ni@gmx.com>
2022-08-23 11:31:33 +02:00
Tamara Dahlgren
3c3b18d858
spack ci: add support for running stand-alone tests (#27877)
This support requires adding the '--tests' option to 'spack ci rebuild'.
Packages whose stand-alone tests are broken (in the CI environment) can
be configured in gitlab-ci to be skipped by adding them to
broken-tests-packages.

Highlights include:
- Restructured 'spack ci' help to provide better subcommand summaries;
- Ensured only one InstallError (i.e., installer's) rather than allowing
  build_environment to have its own; and
- Refactored CI and CDash reporting to keep CDash-related properties and
  behavior in a separate class.

This allows stand-alone tests from `spack ci` to run when the `--tests`
option is used.  With `--tests`, stand-alone tests are run **after** a
**successful** (re)build of the package.  Test results are collected
and report(able) using CDash.

This PR adds the following features:
- Adds `-t` and `--tests` to `spack ci rebuild` to run stand-alone tests;
- Adds `--fail-fast` to stop stand-alone tests after the first failure;
- Ensures a *single* `InstallError` across packages
    (i.e., removes second class from build environment);
- Captures skipping tests for externals and uninstalled packages
    (for CDash reporting);
- Copies test logs and outputs to the CI artifacts directory to facilitate
    debugging;
- Parses stand-alone test results to report outputs from each `run_test` as
    separate test parts (CDash reporting);
- Logs a test completion message to allow capture of timing of the last
    `run_test` part;
- Adds the runner description to the CDash site to better distinguish entries
    in CDash tables;
- Adds `gitlab-ci` `broken-tests-packages` to CI configuration to skip
    stand-alone testing for packages with known issues;
- Changes `spack ci --help` so description of each subcommand is a single line;
- Changes `spack ci <subcommand> --help` to provide the full description of
    each command (versus no description); and
- Ensures `junit` test log file ends in an `.xml` extension (versus default where
    it does not).

Tasks:

- [x] Include the equivalent of the architecture information, or at least the host target, in the CDash output
- [x] Upload stand-alone test results files as  `test` artifacts
- [x] Confirm tests are run in GitLab
- [x] Ensure CDash results are uploaded as artifacts
- [x] Resolve issues with CDash build-and test results appearing on same row of the table 
- [x] Add unit tests  as needed
- [x] Investigate why some (dependency) packages don't have test results (e.g., related from other pipelines)
- [x] Ensure proper parsing and reporting of skipped tests (as `not run`) .. post- #28701 merge
- [x] Restore the proper CDash URLand or mirror ONCE out-of-band testing completed
2022-08-23 00:52:48 -07:00
Mikael Simberg
8b49790784
Constrain __skip_rocmclang workaround in pika package (#32208) 2022-08-23 01:41:54 -06:00
robgics
abad24265e
ampl: Add new version and add variants for more install control. (#32317) 2022-08-23 09:40:53 +02:00
Daryl W. Grunau
4095666013
eospac: support intel-classic@2021 (#32323)
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2022-08-23 09:14:22 +02:00
Ryan Marcellino
877393e019
py-jupytext: add v1.14.1 (#32313) 2022-08-23 09:12:54 +02:00
kwryankrattiger
0d29bc00ec
Kokkos: ROCm and CUDA are not compatible in Kokkos (#32181) 2022-08-23 08:24:56 +02:00