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Author SHA1 Message Date
Mark Olesen
a90324a5b2
openfoam: remove mplibUSER provisioning (#19861) 
- has never been used by the spack package or by the upstream package

Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
 2020-11-11 10:38:50 -06:00
Ganesh Kumar
b1ca2a4346
ROCm3.9 recipe for rocblas, hipblas & rocsolver (#19841) 
* ROCm3.9 recipe for rocblas, hipblas & rocsolver

* review comments

* review comments

Co-authored-by: root <root@mlseqa-hyd-virt-srv-07.amd.com>
 2020-11-11 10:24:25 -06:00
Justin S
15fbbdea7d
soapdenovo2: add 242 (#19849) 2020-11-10 20:12:28 -06:00
Christoph Junghans
f7e3ef1b5c
votca-xtp: update deps (#19850) 2020-11-10 15:01:25 -07:00
t-nojiri
dd96a86511
abi-dumper: Add phases (#19807) 2020-11-10 12:53:39 -06:00
Phil Tooley
db5aa927db
py-torchvision: gather correct cuda_arch setting from py-torch (#19845) 
* py-torchvision: gather correct cuda_arch setting from py-torch dependency

* py-torchvision: remove unneeded variant
 2020-11-10 12:28:01 -06:00
Daryl W. Grunau
f7f4171d4e
py-scipy: set F90 for all compilers (#19818) 
* set F90 when compiling with Intel

* set F90 for all compilers

Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
 2020-11-10 10:52:54 -06:00
Wouter Deconinck
2913903e6a
[geant4] depends_on glu when +opengl (#19821) 2020-11-10 10:29:21 +00:00
Adam J. Stewart
65cef0a3ad
py-gpytorch: add v1.2.1 (#19796) 2020-11-09 20:24:35 -05:00
h-denpo
d8d0935a24
saga-gis: add "depends_on('libsm', type='link')" (#19805) 2020-11-09 16:46:33 -06:00
Kai Torben Ohlhus
4e2f27141c
openblas: Add versions 0.3.11 and 0.3.12 (#19811) 
[OpenBLAS 0.3.11](https://github.com/xianyi/OpenBLAS/releases/tag/v0.3.11) and [OpenBLAS 0.3.12](https://github.com/xianyi/OpenBLAS/releases/tag/v0.3.12) were released.
 2020-11-09 16:33:54 -06:00
Wouter Deconinck
f69643512c
[opencascade] depends_on libxext, libxmu, libxt, libxi (#19823) 
* [opencascade] depends_on libxmu and libxi

* [opencascade] depends_on libxext and libxt
 2020-11-09 16:24:51 -06:00
Satish Balay
01188396da
Trilinos: add 13.0.1 (#19822) 2020-11-09 16:06:27 -05:00
Erik Schnetter
9619f77550
spiral: new version 8.2.0 (#19794) 
* spiral: new version 8.2.0

* spiral: Sort versions anti-chronologically
 2020-11-09 14:32:49 -06:00
Toyohisa Kameyama
52eecad65c
py-pygps: new package. (#19774) 
* py-pygps: new package.

* fixed url.
 2020-11-09 14:32:10 -06:00
Morten Kristensen
a047ea84a3
py-vermin: add latest version 1.0.2 (#19820) 2020-11-09 14:31:21 -06:00
Satish Balay
a0216922f1
add sundials 5.5.0 (#19819) 
(with xsdk build fixes, including mkl, superlu-dist)

Co-authored-by: Cody J. Balos <balos1@llnl.gov>
 2020-11-09 13:59:55 -06:00
Amjad Kotobi
04fdcbed09
ruby-narray: Added git master branch (#19817) 2020-11-09 13:04:22 -06:00
ilbiondo
740cc4058b
tskit package (#19725) 
* tskit package

* Update var/spack/repos/builtin/packages/tskit/package.py

I can't see any hard requirement for 3.6:

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fixes following PR review

* Update var/spack/repos/builtin/packages/tskit/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-09 13:03:09 -06:00
Ethan Stam
e73e7cf0ad
ParaView: correct path for PARAVIEW_VTK_DIR (#19770) 
* ParaView: correct path for PARAVIEW_VTK_DIR

* Update formatting
 2020-11-09 13:02:00 -06:00
Mark Olesen
ac8a07ef4a
openfoam / openfoam-org : handle arch naming differences #19777 (#19778) 
- issue caused by the openfoam-org internal naming for their
  newly added support for aarch64

Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
 2020-11-08 20:26:51 -06:00
Michael Kuhn
0857648313
perl: make 5.32.0 the preferred version (#19799) 
Version 5.32.0 has been out for quite a while and Linux distributions
are shipping it. I have also done a rebuild of some common packages with
the new version. Let's make it the preferred version.
 2020-11-08 10:54:22 -06:00
Adam J. Stewart
1e35faa932
Bash: add new patches, maintainer (#19798) 2020-11-07 20:13:35 -06:00
mic84
765b4c5d2f
amrex: new options names for version > 20.11 (#19769) 
* amrex: new options names for version > 20.11

* amrex: change option name DIM -> AMReX_SPACEDIM

* Update var/spack/repos/builtin/packages/amrex/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-07 14:10:08 -06:00
Brian Van Essen
9cd0f00607
Added code to help DiHydrogen find cuDNN and CUB (#19783) 
* Added code to help DiHydrogen find cuDNN and CUB

* Cleaning up dependencies on CUB and adding guards for when newer
versions of CUDA include CUB and it should be excluded.

* Changed Hydrogen to disable half support by default.

* Have LBANN force Hydrogen and DiHydrogen to build without half when the variant is disabled.

* Added explicit variants to enusre that if LBANN is build without Cuda,
Aluminum, or Half support, it enforces those constraints for Hydrogen
and DiHydrogen.  Cleaned up the use of Python extend versus append in
LBANN and DiHydrogen recipes.

* Fixed Flake8
 2020-11-07 14:09:00 -06:00
Michael Kuhn
887bf734e4
fdupes: new package (#19747) 2020-11-07 14:08:15 -06:00
vvolkl
1d7d4a9071
[evtgen] add env var (#19787) 
* [evtgen] add env var

* Update var/spack/repos/builtin/packages/evtgen/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-07 14:06:41 -06:00
Itaru Kitayama
e87266c646
Add the scorep package dependency. (#19742) 
Co-authored-by: Itaru Kitayama <itaru.kitayama@riken.jp>
 2020-11-06 21:18:49 -06:00
Dr. Christian Tacke
c8b92ef34b
fmt: Add Version 7.1.2 (#19756) 2020-11-06 21:12:45 -06:00
Dr. Christian Tacke
3b4558fe6c
fairlogger: Add Version 1.9.0 (#19758) 2020-11-06 21:12:19 -06:00
Chen Wang
d085d53ebc
New version of Recorder: 2.1.6 (#19760) 2020-11-06 21:11:49 -06:00
eugeneswalker
fbc7cefcf7
make TIMER compatible with LLVM F18 (#19765) 2020-11-06 21:11:13 -06:00
Thomas Madlener
381305da0f
[root] fix package definition (#19775) 2020-11-06 21:04:23 -06:00
darmac
1d52bbdf17
Add new package: predixy (#19776) 2020-11-06 21:03:33 -06:00
Andrew W Elble
dcf3d8332a
cp2k: fix lmax variant to use tuple (#19780) 
* cp2k: fix lmax variant to use tuple

discovered during testing #19501

@dev-zero

* retain conversion to string
 2020-11-06 20:58:38 -06:00
Cyrus Harrison
ef9b8da282
add new vtk-h versions (#19785) 2020-11-06 20:53:36 -06:00
eugeneswalker
8dc8155ed5
fast-global-file-status needs elf (#19789) 2020-11-06 20:52:19 -06:00
eugeneswalker
73773ef9f3
spot: add v2.9.4 (#19790) 2020-11-06 20:51:48 -06:00
Michael Kuhn
f447657395
expat: add 2.2.10 (#19791) 2020-11-06 20:51:04 -06:00
Michael Kuhn
d8f2e54ebf
py-setuptools: add 50.3.2 (#19792) 2020-11-06 20:50:17 -06:00
Michael Kuhn
010ad6011e
glib: add 2.66.2 and 2.64.6 (#19793) 2020-11-06 20:49:21 -06:00
Tom Payerle
07b1ddee23
virtualgl: Change virtual jpeg dependency to libjpeg-turbo dep (#19795) 
See #19784

virtualgl CMake system is looking for a specific libjpeg-turbo include
file, not present in libjpeg (currently the only other jpeg provider)
 2020-11-06 20:47:09 -06:00
Adam J. Stewart
319c4f2e9e
meson: set STRIP on macOS (#19677) 
* at-spi2-core: add new version

* Add strip hacks

* meson: set STRIP on macOS
 2020-11-07 00:34:47 +01:00
ilbiondo
a3854700fb
cget package (#19728) 
* cget package

* Update var/spack/repos/builtin/packages/cget/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cget/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cget/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-06 16:39:42 -06:00
Frank Willmore
2df73cae38
Mumps oneapi (#19786) 
added oneapi compiler to directives for mumps package

Co-authored-by: Frank Willmore <willmore@anl.gov>
 2020-11-06 13:56:42 -08:00
Andrew W Elble
f59bbf9c3a
py-grpcio: workaround build failures pending new release (#19710) 
https://github.com/grpc/grpc/pull/24449 grpc/grpc#24248
 2020-11-06 15:02:11 -05:00
Jen Herting
1f8ca07f46
New package: code-server (#16076) 
* [code-server] created template

* [code-server] installing base server

* [code-server] added description and homepage

* [code-server] removed fixmes

* [code-server] git version > 2 is recommended

* [code-server] added version 3.1.1

* [code-server] flake8

* [code-server] added version 3.4.1

* [code-server] cp() -> install_tree()

* [code-server] removes predefined utilies

* [code-server] ln() -> symlink()
 2020-11-06 12:56:45 -06:00
Jen Herting
1b18e8fbad
New Package: libcumlprims (#19108) 
* [libcumlprims] created template

* [libcumlprims] setting up version urls and added versions

* [libcumlprims] added dependencies

* [libcumlprims] installing prebuild binaries

* [libcumlprims] fixing dependencies

* [libcumlprims] trying to fix cumlprims includedir

* [libcumlprims] updated envvar to SPACK_INCLUDE_DIRS

* [libcumlprims] typoo

* [libcumlprims] added homepage and description. removed fixmes

* [libcumlprims] cp -> install_tree

* [libcumlprims] removed unused import

* [libcumlprims] using new version of updating header files env vars

* [libcumlprims] flake8
 2020-11-06 12:55:29 -06:00
Adam J. Stewart
3953f6af95
oneDNN: add v1.7 (#19718) 2020-11-06 11:45:33 -06:00
Adam J. Stewart
3c4ee6d3cb
py-scipy: add v1.5.4 and master (#19757) 2020-11-06 11:45:14 -06:00
Adam J. Stewart
df3cc079eb
GDAL: add v3.2.0 (#19685) 
* GDAL: add v3.2.0

* Fix typo: satisfes -> satisfies

Co-authored-by: Andrew W Elble <aweits@rit.edu>

Co-authored-by: Andrew W Elble <aweits@rit.edu>
 2020-11-06 11:42:46 -06:00
Adam J. Stewart
e26d01022e
py-numpy: add v1.19.4 (#19678) 2020-11-06 11:41:48 -06:00
Sheng Di
2cb676e8d7
add z-checker (#19738) 
* revise z-checker's package.py

* add mpi dependency to z-checker

* add one whitespace required by Flake8

* trailing whitespace

Co-authored-by: Sheng Di <sdi1@anl.gov>
 2020-11-06 07:48:11 -06:00
Brian Van Essen
f041876470
Added CUB dependency to Aluminum (#19737) 
* Added CUB dependency to Aluminum

* Added hash for version 0.6.0

* Added a maintainer field and slight cleanup.

* Cleanup extend versus append
 2020-11-05 18:01:49 -06:00
Brian Van Essen
16c8cdaef7
LBANN update HWLOC versions (#19683) 
* Updates in LBANN an Aluminum code now allow working with versions
HWLOC 1.11.x and 2.x and up.

* Updating the minimum CMake version to address a pending PR in LBANN
that will require C++17 support and needs CMake to properly separate
the compiler flags from nvcc.

* Clarified the support for different versions of HWLOC in LBANN
 2020-11-05 16:28:27 -06:00
ilbiondo
dcd514c321
filtlong package (#19732) 
* filtlong package

* Update var/spack/repos/builtin/packages/filtlong/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-05 11:04:24 -06:00
ilbiondo
4c254c6c9f
bamaddrg package (#19729) 
* bamaddrg package

* Change version to URL rather than git
 2020-11-05 11:02:43 -06:00
Andrew W Elble
08e825f474
kokkos-legacy: fix host_arch/gpu_arch variants (#19754) 
'default' specifies a value that is not present in 'values'.
 2020-11-05 17:31:11 +01:00
Andrew W Elble
6dc25e7dbf
py-pykwalify: fix conflict directive (missing '^') (#19753) 2020-11-05 17:30:32 +01:00
Andrew W Elble
fa7ba11d1a
py-quantities: fix conflict directive (missing '^') (#19752) 2020-11-05 17:30:08 +01:00
Andrew W Elble
9bca9611c5
py-flye: fix conflict directive (missing '%') (#19751) 2020-11-05 16:53:24 +01:00
Andrew W Elble
9908e7a590
pfunit: fix conflict directive (missing '+') (#19750) 2020-11-05 16:26:26 +01:00
Andrew W Elble
d7335185e3
heffte: fix conflict directive (missing '^') (#19749) 2020-11-05 16:26:03 +01:00
Adam J. Stewart
09ec3e9268
Update packages.yaml format references in packages (#19741) 2020-11-05 15:44:00 +01:00
Andrew W Elble
c4b4cd4973
py-llvmlite: fix llvm compatibility version (#19739) 
won't build with llvm 11
 2020-11-04 15:17:19 -06:00
Chris White
4cd711cb79
Axom: update package (#19717) 
* update spack package from axom's main repo

* flake8, plus loop over possible clangformat paths
 2020-11-04 14:37:24 -06:00
Jeremy
6f4e2e58c3
10.1 release and various bug fixes for SST packages (#19719) 2020-11-04 12:47:41 -06:00
arjun-raj-kuppala
cc0a585816
AMD - Bumped up version for hip-rocclr, rocm-opencl, rocm-smi-lib (#19721) 2020-11-04 12:44:59 -06:00
Sreenivasa Murthy Kolam
3daa7b7b40
update rocm-bandwidth-test,rocm-dbgapi,rocprofiler for rocm 3.9.0 (#19724) 
* update rocm-bandwidth-test,rocm-dbgapi,rocprofiler for rocm 3.9.0

* bump up rocm-gdb for rocm-3.9.0
 2020-11-04 12:43:40 -06:00
ilbiondo
ab046403f6
admixtools package (#19727) 2020-11-04 12:37:15 -06:00
Satish Balay
5b02910e9c
petsc add version 3.14.1 (#19730) 2020-11-04 12:27:11 -06:00
Veselin Dobrev
5511c29869
New MFEM version: 4.2 (#19684) 2020-11-04 12:26:39 -06:00
Robert Maynard
823a3fa646
Added HIP support to VTK-m package (#19523) 2020-11-04 12:25:17 -06:00
Satish Balay
c2b943c209
Trilinos: fix error when configuring downstream dependency 2020-11-04 11:28:14 -05:00
darmac
44d406a1aa
Add new package: abi-compliance-checker (#18737) 
* Add new package: abi-compliance-checker

* refine dependencies

* change exuberant-ctags to universal-ctags
 2020-11-04 14:37:24 +01:00
Andrew W Elble
efb26bb14f
libusb: disable udev (#19713) 
* libusb: disable udev

spack has no libudev/systemd package currently

* convert to AutotoolsPackage

* remove spack import
 2020-11-03 16:47:38 -06:00
Andrew W Elble
ddd2aa0ffc
sirius,spfft: fix defaults for amdgpu_target to be str, not tuple (#19660) 2020-11-03 12:43:16 -06:00
Glenn Johnson
6bcb7128e6
Regenerate patch for gate to include SGE script (#19663) 
The previous patch left out the SGE.script file.
 2020-11-03 12:42:40 -06:00
Glenn Johnson
4ba7ad5162
New package - gatepet2stir (#19664) 2020-11-03 12:41:47 -06:00
Sreenivasa Murthy Kolam
e93ac1a8bd
bump up hsakmt-roct ,hsa-rocr-dev,llvm-amdgpu version for 3.9.0 release (#19668) 
* bump up version for 3.9.0 release

* update version of rocminfo for rocm-3.9.0

* bump up rocm-cmake version for rocm-3.9.0

* bump up rocm-smi and rocmdevice-libs for 3.9.0

* bumpup comgr version for rocm_ 3.9.0

* bump rocm-clang-ocl for rocm-3.9.0

* bump hipify-clang for rocm-3.9.0
 2020-11-03 12:39:40 -06:00
Andrew W Elble
886ae9a83f
speexdsp: fix link dependency on FFT library (#19714) 
without this, the library does not have a dependency
on the fft lib it was built with.
 2020-11-03 12:36:24 -06:00
Desmond
95d63afa58
Package/py json get (#19689) 
* py-json-get: new package at 1.1.1

* py-json-get: new package at 1.1.1

Co-authored-by: las_djorton <las_djorton@build.las.iastate.edu>
 2020-11-03 12:35:26 -06:00
Andrew W Elble
b9d12c93ef
disable tests to fix build. (#19697) 2020-11-03 12:34:17 -06:00
mic84
001f90f411
amrex: new version 20.11 (#19691) 
* amrex: new version 20.11

* Fix formatting issues
 2020-11-03 12:33:45 -06:00
Geoffrey Oxberry
2c511a7dd0
new package: fprettify 0.3.6 (#19699) 2020-11-03 12:31:29 -06:00
Andrew W Elble
11fb0e17b0
py-pygobject: new version 3.38.0 (#19709) 
fix to allow Gtk and others work from 'import gi' etc.
 2020-11-03 12:29:59 -06:00
darmac
cefbc39356
Add new package: libbinio (#19706) 2020-11-03 12:27:45 -06:00
darmac
ffec64ce30
Add new package: jose (#19707) 2020-11-03 12:27:22 -06:00
darmac
b7421c1476
Add new package: libdatrie (#19708) 2020-11-03 12:26:54 -06:00
Daniel Arndt
6492b9a84e
Use commit instead of branch as version for dtk 3.1-rc2 (#19712) 2020-11-03 12:25:26 -06:00
Char Aznable
859fbae4fa
Trilinos: support cuda, hwloc, Kokkos_ARCH_* and c++ std (#19119) 2020-11-03 12:07:20 -06:00
Elliot Saba
771e8b6294
[julia]: CPU names are LLVM-style, must map across (#19549) 
In this case, the `zen2` architecture is unknown; Spack must use the
LLVM-style `znver2` target instead.
 2020-11-03 12:04:29 -06:00
Pieter Ghysels
8cc08bd88b
Trilinos: Add STRUMPACK dependency (#19560) 
* Trilinos: Add STRUMPACK dependency

* break long lines, flake8 cleanup

* Use spec['strumpack'].libs.directories[0]
instead of spec['strumpack'].prefix.lib
because libraries may be in lib or lib64.

Likewise use headers.directories[0] iso prefix.include.

Suggested by adamjstewart
 2020-11-03 12:04:12 -06:00
Wouter Deconinck
cd625e5974
[dire] dire is included in pythia8@8300: so dire depends_on adjusted (#19628) 2020-11-03 12:03:48 -06:00
Geoffrey Gunter
125b80d193
range-v3: add version 0.11.0 (#19639) 
* range-v3: add version 0.11.0

This release drops support for llvm-3.9 per the release notes.

https://github.com/ericniebler/range-v3/releases/tag/0.11.0

* range-v3: rename 'develop' version to 'master'

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-03 12:03:19 -06:00
Satish Balay
dc3d03ed30
superlu-dist: update to version 6.4.0 (#19682) 2020-11-03 12:02:53 -06:00
Satish Balay
5b33157a45
petsc@3.14 update superlu-dist dependency [keep it open-ended for both petsc and superlu-dist future versions] (#19686) 2020-11-03 12:01:14 -06:00
Satish Balay
294715282a
py-petsc4py: add version 3.14.0 (#19681) 2020-11-03 12:00:50 -06:00
Tim Haines
7649186988
Elfutils: added v0.182 (#19700) 2020-11-03 16:37:35 +01:00
darmac
a920ef50dd
Add new package: istio (#17829) 2020-11-03 08:19:43 -06:00