Commit graph

24790 commits

Author SHA1 Message Date
Ben Darwin
4c396d2cee
minc-toolkit: fix perl dependencies (#28868) 2022-02-11 09:30:36 +01:00
Sergey Kosukhin
c80c92aa39
serialbox: add new package (#28872) 2022-02-11 09:23:47 +01:00
kwryankrattiger
cba918c081
Ascent: add dependency on adios2, remove deprecated variant (#28876)
Also update specs to be less complicated for dray/mfem/vtk-h.
Removed deprecated adios variant.
2022-02-11 09:14:06 +01:00
Bryan Herman
37728900e6
PVM package: fix missing install files and runtime env (#28851) 2022-02-10 18:03:11 -08:00
Carlos Bederián
b547819c40
ucx package: add version 1.12.0 (#28752) 2022-02-10 17:53:42 -08:00
Jon Rood
e9b50324cf
trilinos: add rocm_rdc variant (#28873)
* Add rocm_rdc variant to trilinos.

* Fix syntax error.
2022-02-10 16:53:22 -07:00
eugeneswalker
8d8822f749
arborx +rocm: use hipcc and depend on rocthrust (#28875) 2022-02-10 15:39:40 -08:00
Seth R. Johnson
2fa6cd6d23
macOS: always set MACOSX_DEPLOYMENT_TARGET (#28797)
* core: Make platform environment an instance not class method

In preparation for accessing data constructed in __init__.

* macos: set consistent macosx deployment target

This should silence numerous warnings from mixed gcc/macos toolchains.

* perl: prevent too-new deployment target version

```
*** Unexpected MACOSX_DEPLOYMENT_TARGET=11
***
*** Please either set it to a valid macOS version number (e.g., 10.15) or to empty.
```

* Stylin'

* Add deployment target overrides to failing autoconf packages

* Move configure workaround to base autoconf package

This reverts commit 3c119eaf8b4fb37c943d503beacf5ad2aa513d4c.

* Stylin'

* macos: add utility functions for SDK

These aren't yet used but should probably be added to spack debug
report.
2022-02-10 23:22:30 +00:00
Adam J. Stewart
e502a264b5
MAGMA: declare cuda_arch support conflicts (#28811) 2022-02-10 16:52:23 -06:00
Harmen Stoppels
93e7efdc42
hsakmt-roct: dont look for libudev or compiler support libs (#28861) 2022-02-10 23:04:54 +01:00
Manuela Kuhn
16d1746fc3
py-llvmlite: add 0.38.0 (#28822) 2022-02-10 15:26:35 -06:00
Massimiliano Culpo
4437ff1fc3
Stabilize the concretization of ecp-data-vis-sdk by preferring conduit@0.7.2 (#28871) 2022-02-10 21:45:07 +01:00
Massimiliano Culpo
e6e109cbc5
ASP-based solver: reduce input facts and add heuristic (#28848)
* Remove node_target_satisfies/3 in favor of target_satisfies/2

When emitting input facts we don't need to couple target with
packages, but we can emit fewer facts independently and let
the grounder combine them.

* Remove compiler_version_satisfies/4 in favor of compiler_version_satisfies/3

When emitting input facts we don't need to couple compilers with
packages, but we can emit fewer facts independently and let
the grounder combine them.

* Introduce heuristic in the ASP-program

With heuristic we can drive clingo to make better
initial guesses, which lead to fewer choices and
conflicts in the overall solve
2022-02-10 11:37:10 -08:00
eugeneswalker
81a6d17f4c
e4s: new specs: nccmp, nco, wannier90, lammps (#28833) 2022-02-10 10:47:19 -08:00
eugeneswalker
1e4c08f3a5
llvm-doe: rename @clacc to @develop.clacc for proper version matching (#28859) 2022-02-10 10:08:54 -08:00
Olivier Cessenat
8b39aa1b50
cvs: add the external find feature for cvs (#28863) 2022-02-10 12:35:22 -05:00
Christoph Junghans
5206bca19b
lammps: add new versions (#27462)
* lammps: add new versions
2022-02-10 11:37:21 -05:00
Seth R. Johnson
92b26257f4
Fix CMakePackage.define for libs/headers (#28838)
The 'libs' property returned by a spec is not a list nor tuple.

Closes #28836.
2022-02-10 13:43:22 +00:00
luker
fa38af285c
Adding support for rocmcc to cray-libsci package (#28601) 2022-02-10 10:50:33 +01:00
Greg Becker
130354b867
spack audit: fix spurious failures for target/platform conflicts (#28860) 2022-02-10 09:10:23 +01:00
Tamara Dahlgren
36ef59bc67
Tests: move has_test_method to spack.package (#28813) 2022-02-09 22:27:48 -08:00
Mark Grondona
634cba930e
flux-core: add v0.34, v0.35 and deprecate v0.27.0 and earlier (#28852)
* flux-core: add versions 0.34.0 and 0.35.0

* flux-core: deprecate versions <= 0.27.0
2022-02-09 16:12:39 -08:00
Massimiliano Culpo
549c785227
Detecting "Cray" as "linux" during bootstrap (#28726)
* bootstrap: avoid detecting "Cray" and treat the platform as "linux"

* bootstrap: create a proper context manager to disable cray
2022-02-09 17:41:11 -05:00
Cory Bloor
a582670e15
rocrand: add spack test support and cleanup (#27437) 2022-02-09 14:30:56 -07:00
Robert Cohn
7f1759b52e
Remove danvev as maintainer of intel packages (#28806)
* Remove danvev as maintainer of intel packages
* Update hash to trigger gitlab again
2022-02-09 09:51:36 -08:00
Olivier Cessenat
d4ca803fc5
freetype: add 2.11.1 and update Intel conflict (#28606) 2022-02-08 21:34:38 +01:00
Massimiliano Culpo
ffa58a20c6
CI: pin the version of pathlib to v2.3.6 (#28832) 2022-02-08 20:00:20 +00:00
G-Ragghianti
500e05ee50
SLATE package: tests (#28723)
This improves the stand-alone tests for slate by providing most
of the dependencies to the test framework and enabling stand-alone
tests on all versions except the oldest.
2022-02-08 10:30:57 -08:00
Toyohisa Kameyama
c1b51d6e99
fujitsu frontistr: New package (#28514)
* fujitsu-frontistr: new package.

* Add frontistr@5.3
Add fujitsu-frontistr static variant
style fix.

* update copyrigght year.
2022-02-07 18:42:26 -08:00
Michael Bentley
e97bffc3e8
flit: remove dependency from development branch version (#28789) 2022-02-07 18:35:18 -07:00
Adam J. Stewart
457fe842f0
py-scipy: add v1.8.0 (#28798) 2022-02-07 16:35:32 -07:00
Adam J. Stewart
1809a122ef
py-pymumps: remove install_options (#28452) 2022-02-07 14:27:17 -08:00
Axel Huebl
8430e28a52
AMReX: +tiny_profile (#28785)
* AMReX: +tiny_profile

The tiny profiler options in AMReX are by default off but needed
by WarpX. Adds a new variant to control it.

* Add Erik Palmer as Co-Maintainer

... so he receives pings on updates of the package for review.
2022-02-07 15:15:25 -07:00
Tim Haines
c791ddc742
libiberty: add versions from v2.34.1 to v2.37 (#28792) 2022-02-07 06:12:08 -07:00
Harmen Stoppels
9a194dd0a9
Bump ca-certificates-mozilla (#28803) 2022-02-07 06:11:50 -07:00
VladimirUspenskii
0ce71b38b0
Add oneAPI packages from the 2022.1.2 release (#28750)
Co-authored-by: Robert Cohn <rscohn2@gmail.com>
Co-authored-by: Robert Cohn <robert.s.cohn@intel.com>
2022-02-07 14:01:50 +01:00
Stephen Sachs
14902a5821
intel-mkl: BLACS with intel-oneapi-mpi (#28476)
Identify the correct BLACS libaries when `intel-oneapi-mpi` is used.
2022-02-07 13:26:20 +01:00
Seth R. Johnson
efc35c2ffc
gcc: fix build on apple-clang@13 (#28801) 2022-02-07 13:04:37 +01:00
Jordan Galby
37ae4c0fdb
Support config variables in config.yaml extensions paths (#17772) 2022-02-07 11:40:52 +01:00
Adam J. Stewart
f3139555b1
py-torch: update dep constraints (#28743)
The version of the ONNX submodule was updated between the PyTorch
1.9 and 1.10 releases, which fixed builds with newer protobuf but
broke builds with older protobuf.

Also this adds minimum version reqs for numpy/typing-extensions
(which were not present before).
2022-02-06 21:33:12 -08:00
Harmen Stoppels
aa5e1a0723
git: new versions (#28777) 2022-02-06 10:58:17 -08:00
Seth R. Johnson
6e36c71d68
Fix GCC 8 build on macOS bigsur %apple-clang@12.0.5 (#28795)
* gcc: revise patch range on darwin

* gcc: add conflict to work around bootstrap failure

closes #23296 . See https://gcc.gnu.org/bugzilla/show_bug.cgi?id=100340
.

```
Comparing stages 2 and 3
Bootstrap comparison failure!
gcc/tree-ssa-operands.o differs
gcc/tree-ssanames.o differs
gcc/ipa-inline.o differs
gcc/tree-ssa-pre.o differs
gcc/gimple-loop-interchange.o differs
...
```
639 total differences.

* gcc: bump conflict up to correct later version
2022-02-06 07:48:16 -05:00
Axel Huebl
d82dcd35b3
WarpX: add v22.02 (#28742) 2022-02-04 23:53:51 -07:00
Toyohisa Kameyama
797c061743
openfdtd: add version 2.6.3, 2.7.1, 2.7.3 and support Fujitsu Compiler. (#28472) 2022-02-04 11:54:39 -08:00
Toyohisa Kameyama
c29e6dbd20
wrf: Add New version, support fujitsu compiler, refactor and bug fix. (#28567)
* wrf: Add version 4.3, support fujitsu compioler, output build log, and fix to build diffwrf.
2022-02-04 11:53:59 -08:00
Toyohisa Kameyama
cccd1ce376
atompaw: use autotoolsPackage and support Fujitsu compiler. (#28471)
* atompaw: use autotoolsPackage and support Fujitsu compiler.
2022-02-04 11:50:55 -08:00
Harmen Stoppels
73077f3a67
database: fix reindex with uninstalled deps (#28764)
* Fix reindex with uninstalled deps

When a prefix of a dep is removed, and the db is reindexed, it is added
through the dependent, but until now it incorrectly listed the spec as
'installed'.

There was also some questionable behavior in the db when the same spec
was added multiple times, it would always be marked installed.

* Always reserve path

* Only add installed spec's prefixes to install prefixes set

* Improve warning, and ensure ensure only ensures

* test: reindex with every file system remnant removed except for the old index; it should give a database with nothing installed, including records with installed==False,external==False,ref_count==0,explicit=True, and these should be removable from the database
2022-02-04 19:31:39 +00:00
Massimiliano Culpo
5881a03408
Use Spec.constrain to construct spec lists for stacks (#28783)
* stacks: add regression tests for matrix expansion

* Use constrain semantics to construct spec lists for stacks

* Fix semantics for constraining an anonymous spec. Add tests
2022-02-04 19:17:23 +00:00
Axel Huebl
d668dea97d
WarpX/HiPACE: noacc PSATD also needs FFTW (#28756)
Forgot to add that `compute=noacc` also needs FFTW3 for PSATD builds.
2022-02-04 10:59:47 -08:00
Valentin Volkl
45a285a751
py-kubernetes: add new versions up to v21.7.0 (#28687)
* py-kubernetes: add new versions up to v21.7.0

* py-kubernetes: update python dependency
2022-02-04 11:25:10 -06:00