Commit graph

2737 commits

Author SHA1 Message Date
Elizabeth Fischer
18878a8615 doxygen: Disable unnecessary graphviz dependency by default. (#2323) 2016-12-02 10:56:40 -08:00
Jon Rood
8b612d3568 Updating SuperLU package to use pic_flag instead of -fPIC, and removing specific version for default install method. (#2456) 2016-12-02 10:47:35 -08:00
Jon Rood
946605a4c9 Updating yaml-cpp from Package to CMakePackage. (#2457) 2016-12-02 10:41:18 -08:00
Gregory Lee
84dc0b5b83 new intel parallel studio versions (#2459) 2016-12-02 10:35:36 -08:00
Andrey Prokopenko
3024c0096a cmake: update the requirements for --no-system-jsoncpp option (#2312)
The option appeared in CMake 3.2 (specifically, in 3.2.0-rc2, see
https://cmake.org/pipermail/cmake-developers/2015-February/024552.html).
2016-12-01 17:51:00 -08:00
George Hartzell
c01f78e515 Make X11 font install dir the font search default (#2203)
* Make X11 font install dir the font search default

We install the X11 fonts into `/share/fonts` beneath the font-util
installation prefix, but that directory is not one of the places that
the font subsystem searches.

This commit makes the fontconfig package depend on the font-util
package, and then it makes

```python
spec['font-util'].prefix + "/share/fonts"
```

be the fontconfig default font location.

Before this change, plots drawn by R have bounding boxes where font
glyphs should be.  After this change fonts appear as expected.

* Enrich description string (trigger new CI run)

Improve the docstring for the package.

Also interested in the side effect of triggering another CI run
to see if the recent flake8 fix lets this PR run clean.

* Flake8 cleanups
2016-12-01 17:38:00 -08:00
hegner
8dae60c5f0 Fix py-scientificpython and py-argcomplete dependencies (#2420)
* add missing py-numpy dependency to scipy

* add missing setuptools build dependency to py-argcomplete
2016-12-01 14:34:07 -08:00
Sergey Kosukhin
c6e2d9c1b0 Updated hdf5: new versions added. (#2442)
* Updated hdf5: new versions added.

* Updated hdf5: url_for_version() accounts for per-version urls.
2016-12-01 14:31:27 -08:00
Bruno Turcksin
bc4237c93e Update trilinos version to 12.10.1 (#2454) 2016-12-01 11:52:05 -06:00
Denis Davydov
6ce0ee49a9 likwid: add new package (#2455) 2016-12-01 11:51:23 -06:00
Gregory Lee
8e816f8f88 Merge pull request #2364 from davydden/ips_mkl
intel-parallel-studio: fix location of MKL libs
2016-12-01 09:21:37 -08:00
George Hartzell
8ab69c4d32 Update R&friends to use our X11 libs (#2053)
* Update R&friends to use our X11 libs

Add `depends_on()`'s for R, Cairo, and Tk so that they use the Spack X
bits.

* Conditionalize X stuff on variant

Another step towards hooking up the X stuff.

There's still discussion happening on the issue, but this is better
than the 'everything must build with X' state that it was in.
2016-11-30 15:49:49 -06:00
Javier
5eb7026dd1 New package - r-irkernel (#2434)
* New package - r-irkernel

* New package - r-pbdzmq, dependency of r-irkernel

* Adding blank line expected by flake8 tests
2016-11-29 16:59:28 -08:00
Joseph Ciurej
3d439d8946 Added the '+debug' and '+except' variants to the 'tetgen' package. (#2370)
Fixed a bug that was causing memory errors after asserts in 'tetgen@1.5.0'.
2016-11-29 16:18:03 -06:00
Javier
e3778923b6 New package - r-rbokeh (#2436) 2016-11-29 11:29:46 -06:00
Erik Schnetter
00ad8e87f4 jemalloc: Update to 4.3.1 (#2435)
This corrects a severe problem (segfault) on macos Sierra.
2016-11-29 09:51:55 -06:00
Barry Smith
4d56d4f1f9 add support for installing the development (master) version of PETSc (#2431)
Funded-by:  IDEAS
Project:  IDEAS/xSDK
Time:   .3 hours
x
2016-11-29 09:28:09 -06:00
Adam J. Stewart
664939eeba Fix building latest version of flex (#2401)
* Fix building latest version of flex

* Don't need when clause

* Remove perl deps, shebang too long
2016-11-28 09:48:34 -08:00
hegner
a2e6de9b5d add missing zeromq dependency to r-rzmq (#2425) 2016-11-28 09:14:16 -08:00
Javier
bb5bd8091d New package - r-pryr (#2424) 2016-11-28 09:14:10 -08:00
Javier
2d43b56deb New package - r-uuid (#2423) 2016-11-28 09:14:05 -08:00
Javier
6e68a01e50 New package - r-rmarkdown (#2422) 2016-11-28 09:14:00 -08:00
Javier
6c2729ae6f New package - r-repr (#2421) 2016-11-28 09:13:20 -08:00
Denis Davydov
d2d23b76da hdf5: fix for lib64 installation (#2349) 2016-11-28 09:12:48 -08:00
Denis Davydov
b47bd9cc00 scotch: fix compilation on macOS (#2326) 2016-11-26 16:48:50 -08:00
Javier
eeb9c84677 New package - r-rinside (#2416)
* New package - r-rinside

* Changes to pass flake8 test
2016-11-26 16:48:04 -08:00
Javier
1cdfc30374 New package - r-rsnns (#2415) 2016-11-26 16:47:56 -08:00
Javier
0c4e97b6a1 New package - r-rzmq (#2414)
* New package - r-rzmq

* Adding homepage
2016-11-26 16:47:47 -08:00
Javier
7baa6e824b New package - r-irdisplay (#2413) 2016-11-26 16:47:38 -08:00
Javier
cc0d08255c New package - r-hexbin (#2412) 2016-11-26 16:47:25 -08:00
Andrey Prokopenko
8f0b91edaa netcdf: multiple improvements (#2377)
- Added 'dap' and 'cdmremote' variants
  This is based on work in #2324 with the following motivation:
      Turn off DAP support by deafult.  DAP requires curl, which has issues
      with circular dependencies.  For 95% of NetCDF users that do not need
      DAP, turning it off avoides this rats nest of problems.
- Added 'parallel-netcdf' variant
  To support work with parallel-netcdf
- Added 'shared' and 'static' build separation
2016-11-24 13:52:28 -08:00
George Hartzell
cde8f697a9 Bugfix/update go packages (#2369)
* Update go-bootstrap package

The last C based Go src tree was the 1.4 series.  For a while they
were cutting new releases so that people could bootstrap from a C only
system.  Now they're recommending that you either use the release-1.4
branch or that you use a date-stamped tarball that they'll produce on
an as-needed basis.

There are several issues that keep 1.4.2 from building on a CentOS 7
system.

I've switched to the date based tarball.

The cgo bits were also mis-behaving, but they're not needed for the
bootstrapping task so I've set an environment variable that disables
them.

Details [on the install-from-source
page](https://golang.org/doc/install/source#go14) and these issues:

- https://github.com/golang/go/issues/17545
- https://github.com/golang/go/issues/16352.

* Update go package

Switched from pulling from the git repository to using the source
tarballs and added digest values.

Added support for 1.7.3, continued supporting 1.6.2, including patches
for a couple of problems (details in
[17545](https://github.com/golang/go/issues/17545) and
[17986](https://github.com/golang/go/issues/17986).

Dropped support for 1.5.4 and 1.4.2 because they no longer pass their
tests and the patches above to not apply.
2016-11-24 12:25:51 -08:00
Javier
9c267e9c73 Updated version - r-lattice (#2410) 2016-11-24 12:19:42 -08:00
Javier
09a5826903 New package - r-testit (#2409) 2016-11-24 12:19:10 -08:00
Javier
f4fc670ab4 New package - r-highr (#2408) 2016-11-24 12:19:05 -08:00
Javier
bb3239903b New package - r-knitr (#2407) 2016-11-24 12:19:01 -08:00
Javier
8949e67ce3 New package - r-gistr (#2406) 2016-11-24 12:18:57 -08:00
Javier
85638aad03 New package - r-formatr (#2405)
* New package - r-formatr

* Block comment should start with '# '
2016-11-24 12:18:47 -08:00
Javier
4214281ab3 New package - r-evaluate (#2404) 2016-11-24 12:18:41 -08:00
Gregory Lee
96bc3ff8f6 added qt variants for pyqt to build (#2389) 2016-11-23 14:10:12 -08:00
Jon Rood
a6db0bfae2 Updating SuperLU package file with ability to build version 4.3. (#2390)
* Updating SuperLU package file with ability to build version 4.3 (before they added cmake) with external blas or internal blas, and added capability to build the latest version 5.2.1 (with cmake) with internal blas.

* Updating SuperLU package file with suggested changes, i.e. reorganizing installation methods based on version, adding cmake dependency when necessary, removing any use of internal blas, and also adding fpic variant.

* Fixing flake8 failures.
2016-11-23 13:26:00 -08:00
Javier
7bda4e98b3 New package - r-catools (#2394)
* New package - r-catools

* Splitting lines to pass flake8 travis test
2016-11-23 10:57:47 -08:00
Javier
b085ce9e94 New package - r-partykit (#2395)
* New package - r-partykit

* Splitting lines to pass flake8 travis test
2016-11-23 10:57:23 -08:00
Javier
0eddf8421d New package - r-formula (#2396) 2016-11-23 10:56:59 -08:00
Javier
d6710a6aaf New package - r-deoptim (#2397) 2016-11-23 10:56:37 -08:00
Javier
74e6db9060 New package - r-c50 (#2393)
* Adding R library r-bitops

* New package - r-c50
2016-11-23 10:56:13 -08:00
Jon Rood
f8d038c0b8 New package yaml-cpp (#2399)
* Adding new package for yaml-cpp.

* Removing gcc specific c++11 flag. Adding fpic variant. Fixing formatting.
2016-11-23 10:54:22 -08:00
Matthew Scott Krafczyk
1fbe67af3d Update flex package url's and versions (#2384)
* Update flex package url's and versions

The old sourceforge page for flex is now defunct. While version 2.6.0
still downloads fine, later versions are no longer hosted there.
Development continues on github. I've adjusted urls to point to this
new location.

In addition, from 2.6.0 onwards, a new naming scheme for releases seems
to have been adopted. I've created a url_for_version function to sort
this out.

* Change flex to an AutotoolsPackage

Also move the url_for_version function to the end of the package
definition.

* Implement the autoreconf function for flex
2016-11-22 14:30:25 -08:00
becker33
5e73266572 Merge pull request #2291 from ax3l/topic-icet
Packages: Add IceT
2016-11-21 14:27:17 -08:00
Andrey Prokopenko
3954fc8545 llvm-lld: minor misprint fix 2016-11-21 16:22:31 -05:00