Commit graph

16803 commits

Author SHA1 Message Date
Massimiliano Culpo
bbac630aac Reworked tests on compilers to separate version detection
Tests on version detection are now separate from other
tests done on compiler.
2020-06-11 10:06:32 -07:00
Sinan
b50b930d6a
New package: py-uncertainties (#16997) 2020-06-11 08:26:43 -07:00
codeandkey
9820a23abd py-gpy: new package at 1.9.9 2020-06-11 08:25:14 -07:00
Justin S
19dba603ad
py-paramz: new package at 0.9.5 (#17026) 2020-06-10 18:57:08 -07:00
Massimiliano Culpo
478a8aff0e
Move to temporary directory before running dev-build test (#17028)
Without this the test would leave spurious "spack-build-*.txt"
files in the current working directory.
2020-06-10 08:10:57 -07:00
Axel Huebl
2827dca905
ADIOS 2.6.0: New Options (#17025)
Control new options/dependencies in ADIOS2 to avoid pick-up of system
packages.
2020-06-10 10:19:41 -04:00
Toyohisa Kameyama
f6020d259a
adios2: fix to build on Fujitsu MPI and Fujitsu compiler (#17034) 2020-06-10 14:53:09 +02:00
asmaahassan90
0de12be52a
add gaussian-view (#16890) 2020-06-09 16:58:34 -07:00
Joseph Ciurej
9a18fbbc3e
lib/spack : expand spack config vars in 'include' section (#16210)
* Changed the 'include' config section to use 'substitute_path_variables' to allow for Spack config variables to be used (e.g. $spack).

* Fixed a bug with 'include' section path expansion and added a test case for 'include' paths with embedded config variables.
2020-06-09 16:57:27 -07:00
Rob Latham
31791f269b
teach spack how to build pmix from git (#16973)
* teach spack how to build pmix from git

* add variant for new REST feature

* reorder package to match guidance
2020-06-09 16:16:38 -05:00
Robert Blake
872ab21103
Add new package: wcs (#16958)
* Adding a package for wcs.

* Turning on sbml for wcs.

* The cpp flag needs to be available for wcs.

* Wcs needs SBML to properly define the namespace.

* Flake8 fixes.

* Fixing the help string with the description.

* Changing cpp to use the new variant syntax.

* Fixing flake8 errors.

* Forgot to delete one last fixme comment.

* Spack "develop" needs to link to repo "devel"

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Robert Blake <rob.c.blake.3@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-09 16:13:54 -05:00
Joseph Ciurej
806a19c6b6
libffi: add patch for building with clang on power (#16855)
* libffi: add patch for building with '%clang target=power*'

* libffi: fix version of clang/power patch
2020-06-09 13:52:01 -07:00
darmac
8b1ffebe00 Add new package: py-workload-automation 2020-06-09 12:02:49 -07:00
victorusu
a52945613d
New package: py-pygelf (#17004) 2020-06-09 11:54:59 -07:00
Rob Latham
07e97e3ebc
jansson: add versions 2.10 to 2.13.1 (#17011) 2020-06-09 11:53:20 -07:00
Massimiliano Culpo
25a837bf79
Testing: create mock executable fixture (#16999) 2020-06-09 11:00:23 -07:00
Greg Becker
2421d903b0
SpecList: fix recursion for references (#16897)
* SpecList: fix and refactor variable expansion
2020-06-09 08:52:46 -07:00
Jen Herting
11b5fa7170
[util-linux] disabling systemd (#17008)
If systemd support is enabled, install will attempt to modify files in
system systemd directories.
2020-06-09 17:23:29 +02:00
Nathan
f70b72edc5
Set the BOOST_ROOT environment variable when library is loaded (#16818)
* Adding BOOST_ROOT env variable

* Update var/spack/repos/builtin/packages/boost/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-09 08:01:55 -05:00
Massimiliano Culpo
2e20ee8ea2
suite-sparse: build libraries without running demos (#17007)
fixes #16638
2020-06-09 06:54:50 +02:00
oracleLee
9cda38c03d
Update miniconda3@4.8.2 (#17003)
* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Update package.py
2020-06-08 22:48:59 -05:00
Adam J. Stewart
bcf8ebff4f
Cray: fix Blue Waters support and user-built MPIs on Cray (#16593)
* Cray: fix Blue Waters support

* pkg-config env vars needed on Blue Waters

* cray platform: fix support for user-build MPI on cray machines

* reintroduce cray environment cleaning behind cnl version guard

* cray platform: fix support for user-build MPI on cray machines

Co-authored-by: Gregory <becker33@llnl.gov>
2020-06-08 16:44:07 -07:00
Ryan Mast
6f9bfec32e
HELICS: add version 2.5.1 (#17014) 2020-06-08 14:37:49 -07:00
darmac
4d064fd56c
rt-tests: fix build error (#16998)
This is a makefile package and needs to invoke make.
2020-06-08 10:51:59 -07:00
darmac
f8b5e413b4
Add new package: py-devlib (#16982)
* Add new package: py-devlib

* Update var/spack/repos/builtin/packages/py-devlib/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* add depends

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-08 08:33:40 -05:00
vvolkl
8995b3ad3a
Add Package HSF-CMakeTools (#16951)
* [hsf-cmaketools] add package

* fix formatting

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* [hsf-cmaketools] remove cmake_prefix_path which is set already by spack

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-08 08:30:23 -05:00
Amjad Kotobi
c76ab4d8fe
R: url-version custom, release 4 (#16962)
* R: url-version custom, release 4

* r: pcre condition
2020-06-08 08:28:21 -05:00
iarspider
3ea65818e1
Add py-storm@0.23 and update URL (#16991)
* Add py-storm@0.23 and update URL

* Update package.py
2020-06-08 14:09:48 +02:00
Justin S
d9738f569d
ltr-retriever: new package at v2.8.7 (#16832)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-08 08:07:34 +02:00
Greg Becker
bd1a0a9ad4
view remove: directly check whether specs own files before removing from view (#16955)
Bugfix for hardlinks and copies
2020-06-08 06:43:52 +02:00
Mark W. Krentel
763760cfe0
hpcviewer, ibm-java: updates versions (#16987)
hpcviewer: added v2020.05.
ibm-java:  added v8.0.6.10.
2020-06-08 06:15:37 +02:00
iarspider
664c32efb4
py-ipykernel: added v5.1.1 (#16988) 2020-06-08 06:11:24 +02:00
Toyohisa Kameyama
b00f97f7cc
boost: Don't use pre-compiled headers for Fujitsu compiler (#16914)
* boost: Dopn't use pre compile header.

* move %fj.
2020-06-07 09:39:53 -05:00
John Jolly
33923320a8
rose: Add build dependencies for flex and bison (#16981) 2020-06-07 09:36:14 -05:00
Sinan
a2c6f6a703
py-gast: add version 0.3.3 (#16945)
* py-gast: add version 0.3.3

* add python version constraints

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-06-07 09:33:03 -05:00
iarspider
6498b752d1
Add rpy2@3.0.4 (#16924)
* Add rpy2@3.0.4

* Style fixes

* Update package.py

* Proper Python version requirement
2020-06-06 16:33:34 -05:00
Toyohisa Kameyama
7bc44fa165
ffr: fix mpi programs to use mpi compiler wrapper. (#16948) 2020-06-06 16:30:43 -05:00
vvolkl
8f291c7e95
[prmon] add package (#16949) 2020-06-06 16:29:42 -05:00
Michael Kuhn
ad2dd4be01
mongo-c-driver: Add 1.16.2 (#16956)
This also updates libbson to the corresponding version and adds a few
missing older versions.
2020-06-06 16:18:48 -05:00
Matthieu Dorier
543f9f91d4
added CTRE package (#16964) 2020-06-06 16:14:40 -05:00
John Jolly
46a751081d
gcc: Fix error 'size of array is negative' (#16969)
gcc 9.3.0 and glibc 2.31 (found in the base install of Ubuntu 20.04)
cause the gcc package to error during build with the error:

    "size of array 'assertion_failed__####' is negative"

Previous to this fix, the error was resolved for v8.1.0 <= gcc <= v9.2.0
via two patches.

This fix backports those patches for v5.3.0 <= gcc <= v7.4.0

Potentially these patches need to be backported to versions of gcc
before v5.3.0, but other compile issues need to be resolved for earlier
versions of gcc first.

Fixes #16968
2020-06-06 16:14:11 -05:00
Tom Payerle
885808cc13
intel-tbb: Fix for #16938 add custom libs method (#16972)
* intel-tbb: Fix for #16938 add custom libs method

Override the libs method to look for libraries of form libtbb*
(instead of inherited which looks for libintel-tbb*)

* Fixing pre-existing flake8 issues
2020-06-06 16:12:46 -05:00
darmac
c835b93109
Add new package: py-louie (#16983) 2020-06-06 16:02:15 -05:00
darmac
77fbdff8a2
Add new package: lxc (#16984) 2020-06-06 16:00:59 -05:00
Sinan
36f9550178
py-mysqlclient: relax dependency constraint, add new versions (#16985)
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-06-06 16:00:29 -05:00
Sinan
73d13461b1
ensure xla is turned off (#16974)
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-06-06 15:51:19 -05:00
Sinan
7b6e1ae9d3
py-astunparse: add version 1.6.3 (#16946)
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-06-06 15:50:16 -05:00
darmac
c5ac168f31
protobuf: support aarch64 @2.5.0 (#16862)
* protobuf: support aarch64 @2.5.0

* refine cmake args

* fix patch name
2020-06-06 15:47:30 -05:00
Nithin Senthil Kumar
944f0abb36
Update package for MVAPICH2 2.3.4 release (#16960)
Co-authored-by: senthilkumar.16 <senthilkumar.16@nowlab.cse.ohio-state.edu>
2020-06-06 12:51:27 +02:00
John Jolly
d755cc8ce9
iegenlib: add build dependencies for automake and libtool (#16980) 2020-06-06 09:55:14 +02:00