Commit graph

35482 commits

Author SHA1 Message Date
Harmen Stoppels
f05837a480
Fix wrong StageComposite keep override (#38938)
`Stage(keep=True)` was ignored when put in a composite that doesn't
override the value.
2023-07-17 23:20:24 +02:00
Manuela Kuhn
1fa60a6c70
py-pyside: fix build with python3.8 (#38886)
* py-pyside: fix build for version 1.2.2

* Remove check for python version

* Fix style

* Remove unnecessary patch

* Update var/spack/repos/builtin/packages/py-pyside/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pyside/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Remove py-markupsafe conflict

* Update var/spack/repos/builtin/packages/py-pyside/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pyside/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Move python check removal below suprocess patch

* Remove preference of 1.2.2

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-17 15:54:59 -05:00
snehring
1730bcaa31
soapdenovo2: strip optimization flags from injected flags (#38846)
* soapdenovo2: strip optimization flags from injected flags
* soapdenovo2: add maintainer
* soapdenovo2: only append on cflags
* soapdenovo2: clean up some wording and implementation
2023-07-17 13:33:37 -07:00
Alberto Sartori
e6235a8ff9
justbuild: add v1.1.3 (#38925) 2023-07-17 13:23:14 -07:00
Manuela Kuhn
884b4952af
Fix python import tests (#38928)
Running `spack test run <python package>` resulted in the error
```
'str' object is not callable
```
because the python executable was not set correctly.
2023-07-17 13:19:47 -07:00
Seth R. Johnson
cc73789744
vecgeom: new version 1.2.4 (#38940) 2023-07-17 12:00:57 -07:00
Ashwin Kumar Karnad
c9b7eb3647
libxc: add kxc and lxc variants (#38937)
* libxc: add kxc and lxc variants
* libxc: add kxc and lxc variants for @5:0:
* Apply suggestion from @tldahlgren

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-07-17 13:53:29 -04:00
Harmen Stoppels
1100cdf5a0
Enable http/2 support by default in curl (#38750) 2023-07-17 09:21:51 -07:00
Manuela Kuhn
6ac93e1095
librsvg: add 2.56.2 and rust upper version limit for 2.51 (#38766)
* librsvg: add rust upper version limit

* librsvg: Add 2.56.2
2023-07-17 09:14:05 -07:00
Martin Aumüller
193e6e7678
qt-base: fix build on macos, when +network (#38519)
* qt-base: always link to GSS framework on macOS

On macos, the code in src/network/kernel/qauthenticator.cpp
unconditionally includes the header from the GSS framework, so we should
link against it.

This applies two patches from the dev branch. They are to be cherry-picked
into the 6.5 (probably released with 6.5.2) and 6.6 branches, but they
apply against 6.3.2 as well.

* qt-base: disable libproxy on macOS

src/network/CMakeLists.txt disables it on MACOS anyway. And as it is not
found without pkg-config, building with +network would break because of
the feature being explicitly enabled.

* qt-base: don't depend on pkgconfig on macOS

On macOS, usage of pkg-config is disabled by unsetting
PKG_CONFIG_EXECUTABLE, unless the feature pkg-config is requested explicitly.

* qt-base: don't depend on at-spi2-core on macOS

Does not build on macOS and seems to be targeted at linux. Qt6 on
homebrew does not depend on it, either.

* qt-base: fix long lines

* qt-base: restrict use of pkgconfig to linux

yes, probably not needed on windows, either

Co-authored-by: Alec Scott <alec@bcs.sh>

* qt-base: disable libproxy on Windows as well

according to src/network/CMakeLists.txt it's only used on Unix

* qt-base: improvements based on reviewer suggestions

---------

Co-authored-by: Alec Scott <alec@bcs.sh>
2023-07-17 08:53:47 -07:00
Elliott Slaughter
dc216adde2
legion: Add 23.06.0, variants for UCX, max nodes, update CUDA version. (#38759)
* legion: Add 23.06.0, variants for UCX, max nodes, update CUDA version.

* legion: Make newer CUDA versions dependent on newer Legion.

* legion: Update CUDA arch list so that we can stop tracking manually.
2023-07-17 08:51:45 -07:00
Maxence Thévenet
bf43471a7c
HiPACE++ 23.07 (#38862)
* Update package and fix compilation issues
* fix order
2023-07-17 08:23:27 -07:00
Daniele Cesarini
469f06a8f2
Added py-eprosima-fastdds package (#38877)
* Added py-eprosima-fastdds package

* Fixed python extension and dependency version

* Added build type for swig

* Added minimum cmake support

* Added py-test dependency

* Added suggestion on python extension

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Added suggestion on build type for cmake

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-17 11:12:29 -04:00
Massimiliano Culpo
53ae969aa0
Lock, database and store don't need global configuration on construction (#33495)
Lock objects can now be instantiated independently,
without being tied to the global configuration. The
same is true for database and store objects.

The database __init__ method has been simplified to
take a single lock configuration object. Some common
lock configurations (e.g. NO_LOCK or NO_TIMEOUT) have
been named and are provided as globals.

The use_store context manager keeps the configuration
consistent by pushing and popping an internal scope.
It can also be tuned by passing extra data to set up
e.g. upstreams or anything else that might be related
to the store.
2023-07-17 16:51:04 +02:00
Adam J. Stewart
2b5a7bb4d7
Update new PythonPackage template to prefer --config-settings (#38918) 2023-07-17 08:03:05 -05:00
Aiden Grossman
e91db77930
root: Add package name to all conflict messages (#38920)
Not having the package name in the conflict messages can make debugging
conflicts exceedingly hard when trying to concretize an environment with
a sufficient number of packages. This patch adds the package name to all
of the conflict messages so that it is easy to tell just from the
message which package is causing conflicts.
2023-07-17 07:10:36 -05:00
Peter Scheibel
31431f967a
Environment/depfile: fix bug with Git hash versions (attempt #2) (#37560)
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-07-17 11:17:32 +00:00
Massimiliano Culpo
63b88c4b75
Minimal cleanup of a few tests in test/packaging.py (#38880)
* Minimal cleanup of a few tests in packaging.py

* Use f-strings
2023-07-17 10:36:29 +02:00
Manuela Kuhn
5e7f989019
py-jinja2: add conflict for py-markupsafe@2.0.2 (#38913)
* py-jinja2: add conflict for py-markupsafe@2.0.2

* Update var/spack/repos/builtin/packages/py-jinja2/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-15 18:05:15 -05:00
Manuela Kuhn
319ef0f459
py-shiboken: fix build by restricting dependencies (#38900)
* py-shiboken: fix build by restricting dependencies

* Update var/spack/repos/builtin/packages/py-shiboken/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Remove conflict

* Remove py-markupsafe conflict

* Update var/spack/repos/builtin/packages/py-shiboken/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-15 18:57:35 -04:00
Manuela Kuhn
a9d5f24791
py-furo: add new package (#38904) 2023-07-15 17:16:34 -05:00
Manuela Kuhn
74d5da43a8
py-sphinx-rtd-theme: add 1.2.2 and py-sphinxcontrib-jquery: add 4.1 (#38896) 2023-07-15 16:25:58 -05:00
Elliott Slaughter
829b4fe8fe
py-cupy: Add 11.3.0, 11.4.0, 11.5.0, 11.6.0, 12.0.0, 12.1.0 (#38911)
* py-cupy: Add 11.3.0, 11.4.0, 11.5.0, 11.6.0, 12.0.0, 12.1.0.

* Clean up version bounds.
2023-07-14 21:12:31 -07:00
Jonas Thies
5672c64356
add a phist patch to avoid trying to compile SSE code if that is not … (#38806)
* add a phist patch to avoid trying to compile SSE code if that is not available.

* phist: make the avoid-sse patch more robust because compiler on ARM system still tried to compile SSE code
2023-07-14 21:10:57 -07:00
Richard Berger
1f58ac5ed3
spiner: update dependencies (#37367)
* spiner: update dependencies
* spiner: add v1.6.1 and updated dependency
2023-07-14 20:07:17 -04:00
Massimiliano Culpo
206a0a1658
legion package: use conditional variants for gasnet (#38902) 2023-07-14 14:44:15 -07:00
Michael Kuhn
b72d0e850d
lmdb: add 0.9.31 (#38892) 2023-07-14 11:04:16 -07:00
Thomas Madlener
29835ac343
podio: add 0.16.6 tag and mark older releases as deprecated (#38891)
* podio: Add latest tag
* podio: Deprecate older versions
2023-07-14 11:03:08 -07:00
G-Ragghianti
e276131b2a
new release and bug fix on check() (#38901) 2023-07-14 10:57:11 -07:00
Adam J. Stewart
c5f9ae864a
GDAL: add v3.7.1 (#38884) 2023-07-14 13:23:01 -04:00
Harmen Stoppels
ac5976d17d
Remove unused context manager (#38897) 2023-07-14 18:41:30 +02:00
Vicente Bolea
de719e9a4b
adios2: add catalyst variant (#38852) 2023-07-14 08:51:28 -07:00
Harmen Stoppels
f30ede1ab8
ci: remove aws-ahug (#38777) 2023-07-14 10:49:57 -05:00
dependabot[bot]
9e0f1f8998
build(deps): bump actions/setup-python from 4.6.1 to 4.7.0 (#38887)
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.6.1 to 4.7.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](bd6b4b6205...61a6322f88)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-07-14 15:48:29 +00:00
Manuela Kuhn
ee335c0d53
py-protobuf: add 4.23.3 (#38614)
* py-protobuf: add 4.23.3

* protobuf: add 3.23.3

* py-protobuf: disable cpp variant for @4.22:
2023-07-14 10:38:23 -05:00
Manuela Kuhn
0c986da030
py-simplejson: add 3.19.1 (#38898) 2023-07-14 10:34:33 -05:00
Adam J. Stewart
0d5d9524f2
py-lightly: add v1.4.12 (#38883) 2023-07-14 10:49:18 -04:00
Taillefumier Mathieu
c94137f6ea
Use sirius namespacing for cmake (#38707)
* Use sirius namespacing for cmake

* Formating

* Fix lapack variables
2023-07-14 10:43:49 -04:00
Wouter Deconinck
9259a6aae4
xrootd: new versions 5.6.0, 5.6.1 (#38844) 2023-07-14 08:50:52 -05:00
Rocco Meli
244dfb3a35
Fix issue on cray with super call (#38895) 2023-07-14 10:00:02 +00:00
Harmen Stoppels
e16397b5d8
disable superlu test (#38894) 2023-07-14 10:53:16 +02:00
Tamara Dahlgren
2e9e7ce7c4
Bugfix/spack spec: read and use the environment concretizer:unification option (#38248)
* Bugfix: spack.yaml concretizer:unify needs to be read and used
* Optional: add environment test to ensure configuration scheme is used
* Activate environment in unit tests
  A more proper solution would be to keep
  an environment instance configuration as
  an attribute, but that is a bigger refactor
* Delay evaluation of Environment.unify
* Slightly simplify unit tests

---------

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-07-13 23:43:20 +02:00
Adam J. Stewart
f802b64e7a
Update TensorFlow ecosystem (#38747)
* Update TensorFlow ecosystem

* Re-add +cpp

* Do not use system protobuf

* Let bazel auto-detect macOS SDK version

* Unnecessary duplicated dep

* Remove unused import
2023-07-13 14:42:07 -05:00
Sergey Kosukhin
afe6f7ed79
eccodes: fix a few issues in the recipe (#38873)
* explicitly disable the Python 2 interface

* drop obsolete cmake argument HDF5_ROOT for newer versions

* set PYTHON_EXECUTABLE only when needed
2023-07-13 13:53:19 -04:00
Richard Berger
82d41a7be4
FleCSI updates (#38870)
* flecsi: update maintainers
* flecsi: allow newer HPX to be used
* flecsi: propagate ROCm variants when using legion
* flecsi: add v2.2.1
2023-07-13 10:19:11 -07:00
Mikael Simberg
412a09e78b
Add keep_werror = "specific" to mpich (#38861) 2023-07-13 09:27:03 -07:00
Harmen Stoppels
fbc0956d19
ccache: 4.8.2 (#38874) 2023-07-13 09:14:06 -07:00
Harmen Stoppels
dcb4bc3c54
ca-certificates-mozilla: add 2023-05-30 (#38875) 2023-07-13 09:12:46 -07:00
Manuela Kuhn
1ac2f34333
foonathan-memory: add 0.7-3 (#38879) 2023-07-13 08:59:14 -07:00
Harmen Stoppels
033eb77aa9
spack buildcache push: improve argparse (#38876) 2023-07-13 16:01:09 +02:00