Commit graph

18742 commits

Author SHA1 Message Date
Rémi Lacroix
d609a6dde7
Update LAMMPS package (#17715)
* LAMMPS: Use LATTE 1.2.2 starting with version 20200602.

Version 20200602 and upper requires Latte 1.2.2. This caused the internal Latte distribution to be used instead of the Latte install provided by Spack.

* LAMMPS: Add new versions 20200630 and 20200721.
2020-07-30 22:19:59 -05:00
ketsubouchi
45a67fa0f3
dcmtk: fixed type error (#17758)
* dcmtk: fixed type error

* Update var/spack/repos/builtin/packages/dcmtk/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30 22:18:55 -05:00
Francine Lapid
32b070a76b
New package: IDL (#17451)
* New package: IDL

* Update var/spack/repos/builtin/packages/idl/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/idl/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* added license header and changed url_for_version to just url

* removed unused imports, addressed comments

* removed trailing whitespace on line 14

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30 22:17:35 -05:00
darmac
9c7c4a739f
mozjs@1.8.5: fix compile issue (#17594)
* mozjs@1.8.5: fix compile issue

* mozjs: refine method
2020-07-30 22:15:53 -05:00
Tomoki, Karatsu
50f96e15de
vtk: Support for new option to enable MPI. (#17727) 2020-07-30 22:05:20 -05:00
Daryl W. Grunau
7dd5793b75
backport Mesa MR#6053 to prevent multiply-defined symbols (#17720)
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2020-07-30 22:04:24 -05:00
G-Ragghianti
b86e620743
Fixing problems caused by a comfused spack concretizer (#17797) 2020-07-30 22:01:48 -05:00
Harmen Stoppels
6fb8946dd5
Add variants to squashfs for different compression algorithms (#17755) 2020-07-30 22:01:13 -05:00
Lucas Frérot
cfbcf719db
New package: py-uvw (#17719)
* py-uvw: added package for versions 0.0.7 and 0.3.1

* py-uvw: added py-setuptools as dependency
2020-07-30 21:52:17 -05:00
Dr Owain Kenway
8b515f3ba0
flang: make sure to find libstdc++ if needed (#17480) 2020-07-30 14:55:16 +02:00
Adam J. Stewart
d512537417
Python: added v3.8.4, v3.8.5, v3.7.7, v3.7.8, v3.6.11 (#17775)
Also added older version in the 3.6 and 3.5 series
2020-07-30 14:49:01 +02:00
G-Ragghianti
2f5e4e1664
MAGMA isn't compatible with CUDA 11 (#17753)
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30 11:24:21 +02:00
G-Ragghianti
7b051df83f
slate package: resolve issues with cuda version and fortran compiler name (#17759)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30 11:21:49 +02:00
darmac
b96448269a
couchdb: new package at v3.1.0 (#17595) 2020-07-30 11:17:19 +02:00
Wouter Deconinck
b24a9a383a
lhapdf5: new package at v5.9.1 (#17746)
During configure lhapdf5 searches for python. On one system
I tested on (ubuntu 19.10) it finds a system installed python3
and fails to create the python extension.

Variant named to make explicit that this is only a python2 extension.
2020-07-30 11:11:17 +02:00
Rémi Lacroix
cd1647af66
latte: added v1.2.2 and master (#17714)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30 10:19:59 +02:00
darmac
d5fc3f267c
zipkin: new package at v2.21.5 (#17780) 2020-07-30 10:03:52 +02:00
Glenn Johnson
f0ce129c43
New package: r-hh (#17667)
* New package: r-hh

* Add short description

Add the project one liner for a short description that will be used for
`module whatis`.
2020-07-29 22:25:01 -05:00
ilbiondo
d61f362211
Updated iq-tree package (#17690) 2020-07-29 22:20:44 -05:00
Robert Mijakovic
8ea597c79a
Intel packages: new versions (#17692)
* update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel-studio, pin, tbb and makes url parameter consistent and always use single quote.

* Fixes a typo with one of the sha256 checksum..

* Adds version entries for new versions of Intel packages.

* Adds hashes for new versions of Intel packages.

* Adds missing hash of Intel compiler.

* Adds the newest version of Intel MPI 2019.8.

* Fixes hash for intel-parallel-studio and intel-tbb.

* Fixes version number of Intel MPI.

Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2020-07-29 22:18:32 -05:00
Rémi Lacroix
e7fbd6c53e
CMake: Fix compilation with Intel compilers on some systems. (#17693)
Systems with older GNU compilers were not affected.

This commit fixes #15901 and fixes #17605.
2020-07-29 22:17:32 -05:00
Tiziano Müller
8e49cac433
pgi: update to 20.4 (#17696) 2020-07-29 22:16:30 -05:00
Shayna Kapadia
867e64cb4f
libmodbus: new package (#17778)
* libmodbus:adding new package

* fixing testing failures

* fixing flake 8 errors

* fixing flake 8 errors

Co-authored-by: Kapadia <kapadia2@llnl.gov>
2020-07-29 22:13:58 -05:00
Rao Garimella
3a8815ea7a
update version to 1.1.5 (#17701)
Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2020-07-29 22:12:10 -05:00
Toyohisa Kameyama
d14baf4532
use libquadmath only x86_4 and ppcle. (#17728) 2020-07-29 21:47:18 -05:00
Mark Olesen
badd11e71c
openfoam package updates, scotch version update (#17731)
* openfoam: use MPI 'headers' property (fixes #17730)

* openfoam: +spdp variant, usable for OpenFOAM 1906 and later

in contrast to +float32, which uses single-precision throughout, +spdp
uses the following:

- single-precision for most internals
- double-precision for linear solver

* openfoam: add m4 as build dependency

* scotch: update to 6.0.9 released Oct 2019

Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-07-29 21:45:40 -05:00
Valentin Clement (バレンタイン クレメン)
42dec9eb12
CLAW: Add version 2.0.2 (#17733) 2020-07-29 21:43:14 -05:00
Wouter Deconinck
6b3f9c5d60
New package: vgm (#17741)
* [vgm] new package Virtual Geometry Model (VGM)

* [vgm] Updated description
2020-07-29 21:04:37 -05:00
Wouter Deconinck
ba5aa67303
New package: geant4-vmc (#17745)
* [geant4-vmc] New package

* [geant4-vmc] aligned spacing
2020-07-29 20:44:16 -05:00
David Böhme
21ca7abf8d
Add Caliper v2.4.0 (#17750)
* Add Caliper v2.4.0

* Use built-in gotcha
2020-07-29 20:41:41 -05:00
Julien Loiseau
efb456cb0a
Adding pic support for Kokkos (#17751)
* Adding pic support for Kokkos

* Update pic for kokkos
2020-07-29 20:40:12 -05:00
h-denpo
4e12dc3303
elang add depends_on('ncurses', type='link') (#17761) 2020-07-29 20:30:04 -05:00
Mark W. Krentel
896e83e3e6
libunwind: add +pic variant (#17762)
Libunwind already builds a shared library.  The +pic variant adds the
compiler pic flag to the static archive so that it can be linked into
another shared library.
2020-07-29 20:29:24 -05:00
ketsubouchi
8435016a43
eagle: fix CC=gcc and delete march=native (#17763) 2020-07-29 20:28:31 -05:00
Justin S
416a929f7f
spades: add 3.14.1 (#17776) 2020-07-29 20:03:58 -05:00
Robert Pavel
af778aac0a
Tweak to EOSPAC for gcc@10 Support (#17777)
Eospac's build breaks on gcc@10: due to dependence on -fcommon behavior
and gnu changing to -fno-common. Added conditional argument to support
bleeding edge compilers
2020-07-29 20:03:12 -05:00
tilne
5a5f2c00a8
update URL and sha256 for aws-parallelcluster 2.8.0 (#17685)
Signed-off-by: Tim Lane <tilne@amazon.com>
2020-07-29 19:35:43 -05:00
Jen Herting
5243f97c3b
[bowtie2] added version 2.4.1 (#17748) 2020-07-29 15:15:33 -07:00
Rémi Lacroix
5a42883528
Boost: Update conflicts for version 1.73.0. (#17774)
Variant "+mpi+python cxxstd=98" is fixed in 1.73.0.
2020-07-29 12:08:20 -07:00
ketsubouchi
1827db2859
express: add cast for %fj (#17764) 2020-07-29 11:53:39 -07:00
Toyohisa Kameyama
5b12c0f4a0
clamcv: Add curl dependency. (#17765) 2020-07-29 11:48:07 -07:00
darmac
a0e6145884
Add new package: solr (#17597)
* Add new package: solr

* refine version order
2020-07-29 11:38:44 -07:00
Massimiliano Culpo
e47e972cf2 zlib: style changes to check if set of changed files is computed correctly 2020-07-29 11:23:34 -07:00
Massimiliano Culpo
3e1661a183 Use "fetch-depth: 0" to retrieve all history from remote 2020-07-29 11:23:34 -07:00
Massimiliano Culpo
c4f29c6384 Simplified YAML files for Github Actions workflows
Updated actions where needed
2020-07-29 11:23:34 -07:00
Massimiliano Culpo
1f7f076189 Group tests with similar duration together
Style and documentation tests take just a few minutes
to run. Since in Github actions one can't restart a single
job but needs to restart an entire workflow, here we group
tests with similar duration together.
2020-07-29 11:23:34 -07:00
Matthias Wolf
90648bb477
qt: fix build with ~ssl. (#17767)
OpenSSL was pulled from the spec too early, leading to failures when
attempting to build with ~ssl.
2020-07-29 10:53:01 -07:00
Andrew W Elble
d1494fe8da
perl: add missing berkeley-db dependency (#17771) 2020-07-29 10:46:24 -07:00
Massimiliano Culpo
cad21d6eb1
lmod: change variant defaults to match Lmod's defaults (#17770) 2020-07-29 10:35:46 -07:00
mic84
a212bb0577
Amrvis: update branch name (#17718) 2020-07-28 09:12:00 -07:00