Commit graph

20447 commits

Author SHA1 Message Date
Jerome Soumagne
2cf1606896
mercury: update to v2.0.0 (#19635)
Remove deprecated selfforward option, on by default

Rename verbose option to debug option
2020-10-31 13:02:03 -05:00
Geoffrey Gunter
826ed5ff24
fmt: add version 7.1.0 (#19638) 2020-10-31 12:58:37 -05:00
vijay kallesh
51a9473bf8
[NEW] Added amdfftw, amdlibflame and amdscalapack recipes (#19457)
* [NEW] Added amdfftw, amdlibflame and amdscalapack recipes

Updated base fftw, libflame and netlib-scalapack recipes
to accommodate the above listed AMD Optimizing CPU Libraries
which are a set of numerical routines optimized for AMD platforms.

Updated amdblis spack recipe

amdblis:
	1. updated with amdblis 2.2 release
amdfftw:
	1. "--enable-single" now work as synonym for "--enable-float"
amdlibflame:
	1. Added enable_or_disable_threads() to set value for "--enable-multithreading" flag
Libflame:
	1. Added enable_or_disable_threads() to set value for "--enable-multithreading" flag
	2. Corrected invocation of "enable_or_disable('threads')"

Change-Id: I9da0a2c2c4e2075b7fa2776e7cfe6548a2e0b32f

* Added amd-toolchain-support as maintainers

Added team github account amd-toolchain-support
as maintainers for all the recipes owned by
AMD Optimizing CPU Libraries (AOCL) team

Change-Id: I9a7969bd48fc42cfbb88dd7bd93e0802c6138582

* Incorporated review comments

Updated packages.yaml with aocl components
Handled Flake8 test failures

Change-Id: I0a03f02d8c9f326b2434ec907958c3de3a8e18eb

* Readded accidental removal of stream recipe

amdfftw:
	1. Updated the aocc clang selection as per spack standards
fftw:
	1. Currently apple-clang section is redundant,
	already it is handled in the conflict checks.

Change-Id: Idef4a3f61717eb81f321e0cd16e7ba9619eac846

* Fix for style and docs/validate (pull_request) test

unnumbered format placeholders from {} to {0}

Change-Id: If67a3374177ec067573e5504462d257712fafc05

* changed compiler references to Spack's compiler wrapper:spack_cc, spack_cxx, spack_fc

Change-Id: I7ae29c978fff16e37773913f14c84df232499763

* Removed 'single' variant from amdfftw recipe

Instead of conflict for apple-clang + openmp, handled this senario
via below available feature:
depends_on('llvm-openmp', when='%apple-clang +openmp')

Change-Id: I701b23d83e822a500ca3aaf2b60cc9ace09e13dc

* Added relevant info for users who prefers to use single precision

Change-Id: I3506e21da428ddef5fb7895b5aaed32c2a061ef6

* Minor changes on fftw, amdfftw and libflame

amdfftw:
	1. Removed escape symbol to the single quotes
	2. Rewording the conflict line from Recommended
	to Required

fftw:
	1. Reorded to following recommended sections:
	versions, variants, dependencies, providers,
	patches

libflame:
	1. Added provides entry for 5.1.0 version

Change-Id: I21ebff99b6dfde031763154693ecb3f1fa47b476

* Removed single quote from amdfftw docstring to fix style failures

Change-Id: Ife939a5a2f5ccbc8879b730c7bebfe2fcfef9332
2020-10-31 11:57:17 -05:00
Morten Kristensen
08f4ba0c98
py-vermin: add latest version 1.0.1 (#19641) 2020-10-31 11:55:32 -05:00
Adam J. Stewart
d855ad2abb
py-pandas: add v1.1.4 (#19632) 2020-10-30 20:12:47 -04:00
Andrew W Elble
dee92f9b42
New package: gqrx (#19633)
* gqrx and dependencies

* changes

* forgot log4cpp

* misc dep fixes
2020-10-30 19:01:29 -05:00
Danny Taller
9fb2d5521d
changes to support hip build of camp (#19502)
* camp: changes to support hip build

* hip: add fallback path for external hip to detect other rocm components

Co-authored-by: Greg Becker <becker33@llnl.gov>
2020-10-30 13:33:54 -07:00
Massimiliano Culpo
c4aa5cb5bc
Update documentation on containers (#19631)
fixes #15183

- Moved the container related content from
  workflows.rst into containers.rst
- Deleted the docker_for_developers.rst file,
  since it describes an outdated procedure

Co-authored-by: Axel Huebl <a.huebl@hzdr.de>
Co-authored-by: Omar Padron <omar.padron@kitware.com>
2020-10-30 21:17:15 +01:00
Massimiliano Culpo
33c3c3c700
Config: cache results of get_config (#19605)
`config.get_config` now caches the results and returns the same
configuration if called multiple times with the same arguments
(i.e. the same section and scope).

As a consequence, it is expected that users will always call
update methods provided in the `config` module after changing
the configuration (even if manipulating it as a Python nested
dictionary). The following two examples should cover most
scenarios:

* Most configuration update logic in the core (e.g. relating to
  adding new compiler) should call `Configuration.update_config`
* Tests that need to change the global configuration should use the
  newly-provided `config.replace_config` function.

(if neither of these methods apply, then the essential requirement
is to use a method marked as `_config_mutator`)

Failure to call such a function after modifying the configuration
will lead to unexpected results (e.g. calling `get_config` after
changing the configuration will not reflect the changes since the
first call to get_config).
2020-10-30 13:10:45 -07:00
Massimiliano Culpo
458d88eaad
Make archspec a vendored dependency (#19600)
- Added archspec to the list of vendored dependencies
- Removed every reference to llnl.util.cpu
- Removed tests from Spack code base
2020-10-30 13:02:14 -07:00
Mathew Cleveland
f82e858238
update to OPPPY-0_1_4 release (#17716)
Co-authored-by: Cleveland <cleveland@lanl.gov>
2020-10-30 14:58:09 -05:00
darmac
d0ad622272
Add new package: wayland (#18826)
* Add new package: wayland

* remove duplicated dependency
2020-10-30 14:56:31 -05:00
David M. Rogers
d6f0cb0461
Patched hypre to better add flags based on compiler. (#19498)
* Patched hypre to better add flags based on compiler.

* Update package.py

This file seems to have lots of edits, so the patch may succeed with offsets.  Has anyone checked with spack patch to be sure it'll work with versions 2.15 - 2.20?
2020-10-30 14:55:21 -05:00
t-nojiri
ae3178f4eb
py-pycbc: Fix for aarch64 (#19563)
* py-pycbc: Fix for aarch64

* py-pycbc: Change patch application conditions
2020-10-30 14:54:04 -05:00
Scott Wittenburg
31f57e56bb
Binary caching: use full hashes (#19209)
* "spack install" now has a "--require-full-hash-match" option, which
  forces Spack to skip an available binary package when the full hash
  doesn't match. Normally only a DAG-hash match is required, which
  ensures equivalent Specs, but does not account for changing logic
  inside the associated package.
* Add a local binary cache index which tracks specs that have a binary
  install available in a remote binary cache. It is updated with
  "spack buildcache list" or for a given spec when a binary package
  is retrieved for that Spec.
2020-10-30 12:53:33 -07:00
Dr. Christian Tacke
124d654337
glew: Refactor as CMakePackage (#19588)
In #18394 it was noted, that this package should be changed
from a generic "Package" to a "CMakePackage".
It makes a bunch of things easier.

And it uses all the common cmake code.
2020-10-30 14:52:15 -05:00
t-nojiri
e1c1967b54
diamond: The version 2.0.4 file name has been changed. (#19595)
* diamond: The version 2.0.4 file name has been changed.

* diamond: Removed v2.0.4 URL.
2020-10-30 14:51:57 -05:00
Brian Van Essen
7dea225fce
Update lbann version and simplify installation (#19579)
* Added hash values for LBANN v0.101 and Hydrogen v1.5.0.  Updated the
LBANN package to be more successful in resolving a legal configuration
of MPI and HWLOC packages.  This required the removal of the MPI
virtual package since it is unable to resolve dependencies with
minimum version requirements. As a result to enable a reasonable
install line for LBANN this requires explicit forwarding of MPI
variants to Hydrogen and Aluminum.  Due to the lack of variant
forwarding, there are many explicitly replicated dependencies for both
LBANN and Hydrogen.  Fixed the error in LBANN where gpu variant was
replaced by the cuda variant, but not all dependencies were fixed.

* Fixed the minumum cuDNN version for newer versions of LBANN.

* Added explicit versioning of the MPI libraries for DiHydrogen to avoid
all of the conflicts with minimum required versions of the OpenMPI library.

* Removed explicit MPI versions and went back to using the MPI virtual
dependency.  Updated construction of variant forwarding to use
iterative construction of constraints and variants.  This exacerbates
the challenges with backtracking in the current concretizer, but
should be fixed in the new concretizer.

* Added support for including the DiHydrogen library in LBANN as well as
support for the distributed convolution (DistConv) parallel
algorithms.  Also include support for building with half precision.

* Moving dependencies around

* Added conflict statement to ensure that the variant dihydrogen is
required for distconv.

* Removed the preferred field

* Fixed Flake8 and cuDNN version bounds
2020-10-30 14:51:10 -05:00
Hervé Yviquel
a04e7686f8
add recent versions of rdma-core package (#19604) 2020-10-30 14:50:20 -05:00
Dr. Christian Tacke
c3630ed26e
hepmc: Add variants for length and momemtum (#19609) 2020-10-30 14:46:19 -05:00
Toyohisa Kameyama
5a5c220d0a
py-dotnetcore2: Add conflict non x86_64 targets. (#19623) 2020-10-30 14:44:15 -05:00
Robert Underwood
f2318d80d2
sz: version bump 2.1.11 (#19613) 2020-10-30 14:41:21 -05:00
Jen Herting
05cd3c4380
New package: py-cudf (#19111)
* [py-cudf] created template

* [py-cudf] set build directory

* [py-cudf] adding dependencies

* [py-cudf] fixed phases

* [py-cudf] added cmake to fetch some third party dependencies

* [py-cudf] flake8

* [py-cudf] added homepage and description. removed fixmes

* [py-cudf] added dependency of py-cupy

* [py-cudf] depends on py-fsspec

* [py-cudf] py-pyarrow requires +orc

* [py-cudf] py-pyarrow requires +parquet

* [py-cudf] removed upper python limit

* [py-cudf] checksum changed
2020-10-30 14:36:49 -05:00
Tiziano Müller
724325f789
molden: adding the package (#19626) 2020-10-30 14:35:24 -05:00
Teodor Nikolov
fef20524f9
clingo: compilation error - needs a patch (#19624)
* Add a patch to clingo

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-30 11:36:53 -07:00
Adam J. Stewart
3d7e8ff399
PyTorch: add v1.7.0 (#19555) 2020-10-30 12:42:15 -05:00
Adam J. Stewart
cb877e2a28
py-pillow-simd: add older version (#19500) 2020-10-30 12:23:12 -05:00
Adam J. Stewart
be14679719
GDAL: add new version (#19504) 2020-10-30 12:22:53 -05:00
Adam J. Stewart
bea65aacda
py-torchvision: add v0.8.0 (#19556)
* py-torchvision: add v0.8.0

* py-torchvision: add v0.8.1
2020-10-30 12:22:38 -05:00
Adam J. Stewart
bfab98d41e
oneDNN: add v1.6.5 (#19557) 2020-10-30 12:22:07 -05:00
Adam J. Stewart
9dd2ddb7db
py-numpy: add v1.19.3 (#19593) 2020-10-30 12:21:52 -05:00
Seth R. Johnson
f6189031b9
ninja: support spack find external (#19616) 2020-10-30 11:53:30 -05:00
manifest
fc1d39dedc
gemini dep cyordereddict + (#19333)
* gemini dep py-cyordereddict +

* dep ipyparallel +

* py-ipython-cluster +

* py-cyordereddict URL+dep fix

* Update var/spack/repos/builtin/packages/py-cyordereddict/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-ipython-cluster-helper dep fix

* py-ipyparallel dep fix

* ipython-cluster-helper debug

* ipython-cluster-helper debug

* ipyparallel dep fix

* ipython-cluster-helper dep fix

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-30 11:43:03 -05:00
ajaust
e4851d1a89
New package: py-pyprecice (#19558)
* added initial version of package and patch for precice-bindings

* updated package name

* cleanup in script; added version requirement to cython

* Remove unnecessary part of patch

* cleanup package

* added initial version of package and patch for precice-bindings

* updated package name

* cleanup in script; added version requirement to cython

* Remove unnecessary part of patch

* cleanup package

* update style of package

* reformatting to fullfil style requirements

* reformatting again

* fixing some of the issues mention in PR; working on fixing install stage

* readded py-wheel as dependency

Co-authored-by: Benjamin Rüth <benjamin.rueth@tum.de>
2020-10-30 11:39:59 -05:00
Chuck Atkins
aaa1afe9ec
mesa: Retire older autotools mesa as mesa18 and create current meson mesa (#19528) 2020-10-30 11:16:17 -04:00
Morten Kristensen
6a381940ae
py-vermin: added v1.0.0 (#19618) 2020-10-30 10:26:56 +01:00
t-nojiri
11ea2be74a
openfoam-org: added v8.0 (#19622)
openfoam:  fixed build on aarch64
2020-10-30 10:19:40 +01:00
Michael Kuhn
aa14a0aec7
graphviz: fix implicit patch (#19621)
The patch seems to be included in version 2.44.1 already. Moreover, it
is necessary to specify `level=0` to make it apply.
2020-10-30 10:16:40 +01:00
Peter Scheibel
3a863020f0
CI: disable vermin check for deprecated hash (#19612)
Spack has a fallback for hash checking with m55sums that may not be
supported in earlier versions of Python 3.x. The comments in the
Spack code acknowledge that this is best effort and may fail, but
recent vermin checks (running as part of our CI) reject this. This
disables vermin checks for that fallback.
2020-10-29 22:23:36 -07:00
t-nojiri
52379d87fe
caliper: Fix for aarch64 (#19564) 2020-10-29 22:01:05 -05:00
Chris Chambreau
ebe1c6badd
mpip: add v3.5 release (#19559)
* Update for mpip-3.5 release

* Additional changes to support 3.5 and 3.4.1 releases

* Specify python deptype
2020-10-29 16:56:54 -07:00
Frank Willmore
c954d50998
Oneapi add compiler (#19330)
* enable flatcc to be built with gcc/9.X.X

* add static option for building libyogrt

* cleanup

* Initial working version

* rework new oneapi wrappers

* tested and removed my initials from source

* cleanup

* Update __init__.py

* remove whitespace

* working now with mods for testing, detection. Detection for oneapi is working, but entry needs to be modified to add link path for libimf.so. Cleared cruft for old Intel versions

* fixed some formatting

* cleanup

* flake8 cleanup

* flake8

* fixed syntax of compiler version detection tests

* fixed syntax of compiler version detection tests

	modified:   detection.py

* fix typo

* fixes for compilers tests

* remove erroneous tests for outdated -std= flags, remove ifx version check (output won't parse)

Co-authored-by: Frank Willmore <willmore@anl.gov>
2020-10-29 16:52:54 -05:00
Jean-Paul Pelteret
52959528a2
Suite-sparse: Fix Darwin install name (#19507) 2020-10-29 15:29:39 -05:00
Geoffrey Oxberry
af057e0196
yapf: add version 0.30.0 (#19598) 2020-10-29 14:14:55 -05:00
Ben Corbett
305d8d9b1b
Adds a package for LvArray (#19221)
* RAJA and CHAI changes.

* Added LvArray package.
2020-10-29 13:52:10 -05:00
David Beckingsale
e2a720930a
Patch CMake version check in Umpire (#19590)
* Patch CMake version check in Umpire

* Update version constraint for cmake_version_check patch

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add maintainers to Umpire

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-29 11:32:56 -07:00
Jen Herting
518124c14a
[py-torch-nvidia-apex] added version 201019 and added dependency on p… (#19548)
* [py-torch-nvidia-apex] added version 201019 and added dependency on py-pybind11

* [py-torch-nvidia-apex] changed versioning format

* [py-torch-nvidia-apex] removed redundent version condition

* [py-torch-nvidia-apex] removed condition on dependency
2020-10-29 11:20:18 -05:00
Jen Herting
0fc79293c6
New package: py-cupy (#19468)
* [py-cupy] created template

* [py-cupy] added dependencies

* [py-cupy] switched to git based download for submodules

* [py-cupy] added dependencies

* [py-cupy] added homepage and description. removed fixmes

* [py-cupy] updated to tarball from pypi
2020-10-29 11:17:14 -05:00
h-denpo
c2e6610948
plplot:fix: add: depends_on('libsm', type='link') (#19594) 2020-10-29 11:10:57 -05:00
Rémi Lacroix
a4a64e1fbd
Gromacs: Remove a dependency that could never be enabled. (#19599)
The `fft` variant was removed but not the associated dependency.
2020-10-29 11:08:13 -05:00