Commit graph

31986 commits

Author SHA1 Message Date
Harmen Stoppels
06268f7b72
perl: add 5.38.0, 5.36.1; prefer all even minor versions over development versions (#38690)
* perl: add 5.38.0, 5.36.1; prefer all even minor versions over development versions

* fix libxcrypt build with new perl

* fix libxcrypt with a patch
2023-07-05 18:08:54 -04:00
Manuela Kuhn
f884e71a03
py-spglib: add 2.0.2 (#38715)
* py-spglib: add 2.0.2

* Update var/spack/repos/builtin/packages/py-spglib/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Remove py-setuptools as run dependency

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-05 15:24:31 -05:00
Wouter Deconinck
ea1439dfa1
acts: new variant cxxstd (#38682)
* acts: allow ^root cxxstd=20

* acts: new variant cxxstd, pass through to root

* acts: always args.append CMAKE_CXX_STANDARD from variant

* acts: remove unused import

* acts: fix self.define_from_variant
2023-07-05 12:56:06 -07:00
Adam J. Stewart
45838cee0b
Drop Python 2 super syntax (#38718) 2023-07-05 09:04:29 -05:00
Adam J. Stewart
95847a0b37
Drop Python 2 object subclassing (#38720) 2023-07-05 14:37:44 +02:00
George Young
8861fe0294
salmon: patching to build with %gcc@13: (#38553)
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-07-05 14:36:55 +02:00
Harmen Stoppels
12427c6974
plumed: deprecate non-buildable versions, patch Python makefile only when supported (#38713) 2023-07-05 05:48:13 -04:00
Taillefumier Mathieu
a412403d7b
Update cosma and a few related recipes (#35615)
* Add maintainers 

* Updated cosma archive checksum and costa version

- updated cosma version (in the cosma build system)
- updated costa version
- use the default generic url for downloading packages
- do not build tiled-mm when the cpu only version is needed


Signed-off-by: Dr. Mathieu Taillefumier <mathieu.taillefumier@free.fr>
Co-authored-by: Rocco Meli <r.meli@bluemail.ch>
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-07-05 11:02:50 +02:00
Martin Diehl
6a258c148f
damask: fix build of alpha release (#38457) 2023-07-05 10:59:05 +02:00
Tom Epperly
8b13440038
Add version 1.8.23 that fixes a compilation bug on clang-15. (#38541) 2023-07-05 10:56:18 +02:00
Tamara Dahlgren
632f840d8a
tk: convert to new stand-alone test process (#38575) 2023-07-05 10:55:07 +02:00
Alex Richert
8372726a88
ip: add v4.1.0, and additional variants (#38526) 2023-07-05 10:45:38 +02:00
Tamara Dahlgren
5dc84b64e9
tests/qthreads: convert to new stand-alone test process (#38600) 2023-07-05 10:41:25 +02:00
Tamara Dahlgren
8d72b8dd63
tests/papyrus: convert to new stand-alone test process (#38627) 2023-07-05 10:34:15 +02:00
Jim Phillips
adde84e663
Build NAMD with Tcl by default (#38645)
NAMD users expect the Tcl scripting interface to be enabled as it is used in many examples and tutorials in addition to being required for features such as multi-copy algorithms.
2023-07-05 10:29:11 +02:00
Rémi Lacroix
f863066b7e
git-annex: add latest version 10.20230408 (#38728) 2023-07-05 04:27:46 -04:00
Juan Miguel Carceller
082afe04b8
xrootd: add _STAT_VER patch (#38547)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-07-05 10:14:18 +02:00
Peter Scheibel
f365386447
Installations: don't set group permissions when they match what is desired (#38036)
* When installing a package Spack will attempt to set group permissions on
the install prefix even when the configuration does not specify a group.

Co-authored-by: David Gomez <dvdgomez@users.noreply.github.com>
2023-07-05 09:54:04 +02:00
Carlos Bederián
a90200528f
hcoll: ucx version requirements (#38665) 2023-07-05 09:48:58 +02:00
Adam J. Stewart
1ce6feef94
py-pyqt4: stricter dependency versions (#38673) 2023-07-05 09:45:24 +02:00
Weiqun Zhang
84010108b1
amrex: add v23.07 (#38676) 2023-07-05 09:43:37 +02:00
Adam J. Stewart
24d2005920
py-lightly: add v1.4.11 (#38717) 2023-07-05 09:41:08 +02:00
Robert Cohn
fa73b14247
intel-oneapi-mkl: support for cray mpich (#38725) 2023-07-05 09:20:19 +02:00
Manuela Kuhn
a99b7886e9
py-pymatgen: add 2022.9.8 (#38714) 2023-07-05 00:12:18 -05:00
Adam J. Stewart
2978911520
spack commands: add type hints and docstrings (#38705) 2023-07-04 16:43:02 -04:00
Harmen Stoppels
d35149d174
remove another Python 3.7 requirement & preference, since it was deprecated (#38710) 2023-07-04 20:33:47 +02:00
Manuela Kuhn
a3d11a7973
py-requests: add 2.31.0 (#38563) 2023-07-04 10:33:06 -04:00
Max Zeyen
cb69dbd804
gpi-space: add new versions (#38709)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-07-04 15:01:39 +02:00
Laura Bellentani
e6f50c5341
quantum-espresso: change in maintainers (#38688) 2023-07-04 14:06:21 +02:00
Chris White
32d0b5ca97
conduit: remove no longer needed blueos logic (#38698) 2023-07-04 07:52:59 -04:00
valmar
b537fad37a
Added Python Prometheus client as dependency (#38700) 2023-07-04 07:12:47 -04:00
Thomas Bouvier
78e78eb1da
nvtx: add new package (#38430)
Co-authored-by: thomas-bouvier <thomas-bouvier@users.noreply.github.com>
2023-07-04 07:07:41 -04:00
Stephen Sachs
8aeecafd1a
wrf: add ARM compiler support (#38695) 2023-07-04 12:33:58 +02:00
Stephen Sachs
a0b2ca2dde
Temporarily disable aws-pcluster pipelines (#38708) 2023-07-04 11:27:01 +02:00
Harmen Stoppels
08f23f4802
macos sip: apply on macos only, dont store LD_LIBRARY_PATH (#38687) 2023-07-04 10:54:13 +02:00
Adam J. Stewart
e9dc6dc96c
Fix DYLD_* propagation to Python process from fish shell (#38615) 2023-07-04 10:48:56 +02:00
Adam J. Stewart
5588b93683
util-linux: add v2.39.1, fix macOS build (#38677) 2023-07-04 10:47:26 +02:00
George Young
70a38ea1c5
plink2: add new package @2.00a4.3 (#38469)
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-07-04 04:09:45 -04:00
Adam J. Stewart
5bd7a0c563
spack make-installer: deterministic choice order (#38706) 2023-07-04 09:39:38 +02:00
Adam J. Stewart
33c5959e23
Remove from __future__ imports (#38703) 2023-07-04 08:30:29 +02:00
Manuela Kuhn
65288566e5
py-numpydoc: add 1.5.0 (#38701) 2023-07-03 22:13:54 -04:00
Manuela Kuhn
5e1c4693fd
py-ruff: add 0.0.276 (#38702) 2023-07-03 21:59:14 -04:00
Aditya Bhamidipati
feb4681878
Add NCCL v2.18.3-1 release to recipe (#38647) 2023-07-03 16:26:07 -05:00
Thomas Bouvier
994b5ad49e
ffmpeg: patch build failure (#38656)
* `ffmpeg`: patch build failure

* [@spackbot] updating style on behalf of thomas-bouvier

---------

Co-authored-by: thomas-bouvier <thomas-bouvier@users.noreply.github.com>
2023-07-03 11:12:26 -07:00
Harmen Stoppels
4654db54c7
hdf5-vol-log: depends on mpi (#38693)
From the configure.ac file:

> H5VL_log is built on top of MPI. Configure option --without-mpi or
> --with-mpi=no should not be used. Abort.

This currently fails to build in the oneAPI pipeline on `develop`
2023-07-03 20:08:40 +02:00
Adam J. Stewart
a6ebff3a2e
py-pillow: add v10.0.0 (#38670) 2023-07-03 11:02:24 -07:00
Ashwin Kumar Karnad
6e8fb30b83
Add hash for octopusV13 (#38655) 2023-07-03 10:24:52 -07:00
Cyrus Harrison
465f83b484
add ascent 0.9.2 release (#38661) 2023-07-03 10:14:01 -07:00
Harmen Stoppels
ba7ae2c153
Drop requirement of python@3.7 since it's deprecated (#38692) 2023-07-03 16:15:32 +02:00
Jonathon Anderson
54adab7eac
python: require xz libs=shared when +lzma (#38593) 2023-07-03 07:11:30 -05:00