Commit graph

31103 commits

Author SHA1 Message Date
Alec Scott
0d624d9842
r-plyr: add v1.8.8 (#36880) 2023-04-15 14:24:18 +02:00
Alec Scott
b0eaab8242
r-psych: add v2.3.3 (#36882) 2023-04-15 14:23:22 +02:00
Alec Scott
4655936389
r-qtl: add v1.58 (#36883) 2023-04-15 14:20:26 +02:00
Alec Scott
7f319429fd
r-rcppparallel: add v5.1.7 (#36885) 2023-04-15 14:20:02 +02:00
Alec Scott
7c20aaaab8
r-rlang: add v1.1.0 (#36887) 2023-04-15 14:19:18 +02:00
Alec Scott
a3d49a56a8
r-rrblup: add v4.6.2 (#36888) 2023-04-15 14:19:02 +02:00
finkandreas
e7238a0f26
suite-sparse: fix build with GPU targets 2023-04-15 14:18:45 +02:00
Juan Miguel Carceller
161485a774
cairo: add a dependency on which (#36908) 2023-04-15 14:16:41 +02:00
Alec Scott
b6c3cbff6f
ncio: add v1.1.2 (#36857) 2023-04-15 14:09:00 +02:00
Alec Scott
55adddc239
aspcud: add v1.9.6 (#36912) 2023-04-15 14:08:43 +02:00
Alec Scott
903626c899
conserver: add v8.2.7 (#36913) 2023-04-15 14:07:16 +02:00
Alec Scott
afc6560429
exa: add v0.10.1 (#36914) 2023-04-15 14:06:57 +02:00
Alec Scott
03be2635eb
libverto: add v0.3.2 (#36915) 2023-04-15 14:06:39 +02:00
Alec Scott
efa51e124d
r-dorng: add v1.8.6 (#36916) 2023-04-15 14:06:20 +02:00
Alec Scott
6ab070d2ae
r-gower: add v1.0.1 (#36917) 2023-04-15 14:05:53 +02:00
Alec Scott
433afe39a7
r-grbase: add v1.8.9 (#36918) 2023-04-15 14:05:36 +02:00
Alec Scott
9ba4b0cab8
r-tigris: add v2.0.1 (#36919) 2023-04-15 14:05:13 +02:00
Alec Scott
554d9125ef
routino: add v3.3.3 (#36920) 2023-04-15 14:04:52 +02:00
Alec Scott
9e4dd4972f
trident: add v23.01.1 (#36921) 2023-04-15 14:03:53 +02:00
Alec Scott
39c7b10735
double-conversion: add v3.2.1 (#36931) 2023-04-15 13:52:28 +02:00
Alec Scott
4bb4225f09
kraken: add v1.1.1 (#36932) 2023-04-15 13:51:34 +02:00
Alec Scott
1582ce6397
r-bayesplot: add v1.10.0 (#36933) 2023-04-15 13:50:58 +02:00
Caleb Robinson
becebe99b4
Updating torchgeo to 0.4.1 (#36793)
* Updating torchgeo to 0.4.1

* Added some commas

* Update var/spack/repos/builtin/packages/py-torchgeo/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-torchgeo/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-torchgeo/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Changed fiona bounds

* Update var/spack/repos/builtin/packages/py-torchgeo/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-04-14 22:17:35 -04:00
Adam J. Stewart
e3bb6d98fb
py-pyupgrade: add v3.3.1 (#36926) 2023-04-14 17:18:00 -07:00
Juan Miguel Carceller
89b8445eb0
Add jmcarcell to the maintainers of some packages (#36909)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-04-14 17:03:50 -07:00
Dan Bonachea
b7c2cc9b85
upcxx: Fixes for Cray targets (#36708)
* upcxx: Enhance auto-detection for HPE Cray EX platforms

1. Some Cray EX systems use ALPS instead of SLURM, ensure we default
   the pmi-runcmd appropriately.

2. Some Cray EX systems run a stock kernel and lack a Cray PrgEnv
   (yes, really), so add a check for libfabric CXI provider as a
   last resort for detecting Cray EX, and ensure we don't choke on
   a lack of `$CRAYPE_DIR`.

* upcxx: Cray XC improvements

1. Future-proof Cray XC detection, in case Spack ever starts reporting
   it as "linux".
2. Revert cray-libsci workaround for ALCF Theta. The workaround no longer
   appears to be necessary, and is actually causing failures on Theta now.

* upcxx: Add level_zero variant detection
2023-04-14 16:17:41 -07:00
Sergey Kosukhin
5efd689803
proj: fix installation of datum grid with Autotools (#36906) 2023-04-14 18:18:21 -04:00
Adam J. Stewart
4d11001046
Issue Templates: improve details formatting (#36923) 2023-04-14 12:16:22 -05:00
Doug Jacobsen
690394fabc
Change environment modifications to escape with double quotes (#36789)
This commit changes the environment modifications class to escape
strings with double quotes instead of single quotes.

Single quotes prevent the expansion of enviornment variables that are
nested within environment variable definitions.
2023-04-14 10:13:17 -07:00
John W. Parent
7d083cf138
cmake: add version 3.26.3 (#36648) 2023-04-14 11:03:36 -04:00
Scott Wittenburg
bfa94c5781
gitlab ci: Better tagging of "service" jobs (#36846)
- Tag non-rebuild jobs to target a cheaper (and more highly available)
subset of runners.

- Add missing resource requests to these jobs as well.
2023-04-14 09:03:12 -06:00
kwryankrattiger
3710774d02
VTK-m: use conflict with virtuals variant with ROCm (#36845) 2023-04-14 16:55:46 +02:00
Alec Scott
32808f4fb5
yambo: add v5.1.1 (#36905) 2023-04-14 07:13:33 -04:00
Alec Scott
7c2fc29b6a
tempestremap: add v2.1.6 (#36903) 2023-04-14 07:03:35 -04:00
Alec Scott
5504fd6730
speex: add v1.2.1 (#36902) 2023-04-14 12:28:37 +02:00
Alec Scott
7066b61be3
vecmem: add v0.24.0 (#36904) 2023-04-14 12:27:12 +02:00
Massimiliano Culpo
9ec289857c
netcdf: fix bugs introduced with multiple build systems split (#36825)
Fixes #36689

- The "base" builder class should be last in the MRO
- `filter_compiler_wrappers` needs to be moved to builders
- Decorating a function from a mixin class require using
   the correct metaclass for the mixin
2023-04-14 10:59:12 +02:00
Massimiliano Culpo
92144d6375
lz4: fix bug on darwin, use makefile by default (#36820)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-04-14 09:43:59 +02:00
Wouter Deconinck
0c2aafec33
cernlib: depends_on openssl when platform=linux (#36837)
Fixes #36836.
2023-04-14 09:17:13 +02:00
Adam J. Stewart
2380810d60
py-lightning: add v1.9.5 (#36803) 2023-04-14 09:08:19 +02:00
Alec Scott
7786da9117
kubernetes: add v1.27.0 and split off new package kubectl (#36780) 2023-04-14 09:07:42 +02:00
Wouter Deconinck
87dca0130c
(py-)onnx: new version 1.13.0, 1.13.1 (for py-torch@2) (#36797)
* (py-)onnx: new version 1.13.0, 1.13.1 (for py-torch@2)

ONNX has a new version 1.13.1 which is required for py-torch +onnx_ml.
This version adds python 3.11 support, Mac M1/M2 support. No build
system changes changes.

- https://github.com/onnx/onnx/releases/tag/v1.13.0 (main changes)
- https://github.com/onnx/onnx/releases/tag/v1.13.1 (bugfixes)
- https://github.com/onnx/onnx/commits/main/CMakeLists.txt (top 6
  commits are on top of the last 1.12 release)
- https://github.com/onnx/onnx/blob/v1.13.1/requirements.txt
- https://github.com/onnx/onnx/blob/v1.13.1/requirements-release.txt

* py-onnx: update dependencies

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* protobuf: new version 3.22.2, depends_on abseil-cpp

* onnx: require c++14 for protobuf

* py-protobuf: new preferred version 3.20.3

* protobuf: new versions 3.20.2, 3.20.3

* [@spackbot] updating style on behalf of wdconinc

* protobuf: no double depends_on abseil-cpp

* py-protobuf: no preferred 3.20.3

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-04-13 21:25:58 -05:00
MikeG
f171d7ed15
py-dask-mpi: remove jupyter-server-proxy (#36680)
* py-dask-mpi: remove jupyter-server-proxy

This dependency isn't a 'hard' one; it optionally simplifies getting access to the web consoles.
See: https://github.com/dask/dask-mpi/pull/102

* Add patch to remove unnecessary dependency

* review comments

* pass formatting
2023-04-13 21:22:59 -05:00
Nisarg Patel
e2812a6e96
Update m4 (#36835)
* Update m4

For %oneapi & %intel, we explicitly set -O0 so dependents of m4 do not break
        # The default optimization level for icx/icpx is "-O2", 
        # but building m4 with this level breaks the build of dependents. 
        # So we set it explicitely to "-O0".

* [@spackbot] updating style on behalf of hpcnpatel
2023-04-13 21:02:43 -04:00
Adam J. Stewart
2b47a7a22f
py-lightly: add new package (#36839) 2023-04-13 19:16:22 -05:00
eugeneswalker
a9db5620f5
remove x86_64_v3 tags (#36828) 2023-04-13 15:29:15 -05:00
Erik Schnetter
f4833a9869
mpiwrapper: New version 2.10.3 (#36816) 2023-04-13 20:28:51 +02:00
dependabot[bot]
4a44e4bed9
build(deps): bump actions/checkout from 3.5.0 to 3.5.1 (#36815)
Bumps [actions/checkout](https://github.com/actions/checkout) from 3.5.0 to 3.5.1.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](8f4b7f8486...83b7061638)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-04-13 20:28:26 +02:00
Erik Schnetter
44e2d1cd03
mpitrampoline: add v5.2.3 (#36814) 2023-04-13 20:27:55 +02:00
Wouter Deconinck
ff319e9863
Resolve <include-fragment> tags e.g. in github release pages (#36674)
This aims to resolve #34164 by resolving the <include-fragment> tags
that GitHub has started using for their release pages, see
https://github.github.io/include-fragment-element/.

This feels a bit hacky but intended as a starting point for discussion.
After reading a page during spidering, it first parses for
include-fragments, gets them all, and treats them all as separate pages.
Then it looks for href links in both the page itself and the fragments.

Co-authored-by: Alec Scott <alec@bcs.sh>
2023-04-13 20:26:26 +02:00