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310 commits

Author SHA1 Message Date
Tom Scogland
c8ad456fd6 nettle depends on gmp, without it the nettle build fails on gcc 4.9.2 2015-06-09 19:37:42 -07:00
Tom Scogland
8839eeb421 new package files for python-cffi and its dependency pycparser 2015-06-09 19:36:08 -07:00
Tom Scogland
eab3d4811e package files for libuuid, needed for flux and taskwarrior packages, along with the taskwarrior packages 2015-06-09 19:26:49 -07:00
Todd Gamblin
e64c0f4e4e Fix Boost finding in Dyninst 8.2.1. 2015-06-09 17:48:38 -07:00
Todd Gamblin
bde9c7eee3 Upate ATLAS and netlib-blas. 2015-06-07 15:41:15 -07:00
Todd Gamblin
0570660d81 Make blas a virtual dependency, default netlib-blas. 2015-06-06 18:23:12 -07:00
Todd Gamblin
26b9592780 Add disablement of cpu throttle check. 2015-06-06 18:19:05 -07:00
Todd Gamblin
8b9dcfe635 Delete lapack/atlas combined package. 2015-06-06 18:18:51 -07:00
Todd Gamblin
5d94864b6c Rename netlib_blas -> netlib-blas 2015-06-06 18:18:44 -07:00
Todd Gamblin
50d7b3df2b Merge branch 'psaravan-fastmath' into features/fastmath 
Conflicts:
	var/spack/packages/lapack/package.py
 2015-06-06 18:17:59 -07:00
Todd Gamblin
8215c85619 Merge branch 'develop' into features/fastmath 2015-06-06 18:15:52 -07:00
Todd Gamblin
c43b5d670b Remove dummy fastmath package. 2015-06-06 17:48:33 -07:00
Todd Gamblin
b6ad37557f fix up Saravan's petsc install 2015-06-06 17:41:15 -07:00
Todd Gamblin
d266bf0184 Working Hypre, PARPACK. 2015-06-06 17:21:11 -07:00
Todd Gamblin
5294e2b9b9 CGM package working on cab. 2015-06-06 16:56:59 -07:00
Todd Gamblin
c5ab3f4e82 CBLAS package working and patching in spack compilers. 2015-06-06 16:29:37 -07:00
Todd Gamblin
f29fc5822b Working boxlib package. 2015-06-06 16:16:19 -07:00
Todd Gamblin
b9746de52e Working ARPACK package. 2015-06-06 15:26:54 -07:00
Todd Gamblin
03780ea105 Remove autosave files from saravan's PR 2015-06-06 15:26:54 -07:00
Todd Gamblin
422a75e4b8 Clean up arpack build, use the Spack f77 compiler. 2015-06-06 15:26:54 -07:00
Saravan Pantham
1f0246f970 Updated HDF5 to use MPI. 2015-06-06 15:26:43 -07:00
Saravan Pantham
9d71093500 Updated Zoltan. 2015-06-06 15:26:42 -07:00
Saravan Pantham
fd34f4b119 Added more FASTMath packages. 2015-06-06 15:26:38 -07:00
Saravan Pantham
c174fe6199 Fixed BLAS and Lapack installations 2015-06-06 15:26:31 -07:00
Saravan Pantham
d461aa3722 Added Lapack package 2015-06-06 13:06:18 -07:00
Saravan Pantham
a23e1579e3 Added BLAS package 2015-06-06 13:06:17 -07:00
Todd Gamblin
ab31f989db Merge Alfredo's Mitos changes from github with Greg's Python changes. 2015-06-06 12:53:28 -07:00
Gregory L. Lee
96ec75f7fe Merge branch 'develop' of ssh://cz-stash.llnl.gov:7999/scale/spack into develop 2015-06-04 15:49:57 -07:00
Gregory L. Lee
5ac5c021b8 new package versions 2015-06-04 15:49:55 -07:00
Alfredo Gimenez
dae33a31c0 Dyninst 8.2.1+ dependency for cmake 2015-06-03 22:02:47 -07:00
Alfredo Gimenez
15aee0de1a Mitos updated with new release 2015-06-03 21:58:44 -07:00
Gregory L. Lee
c4f5a881e6 new Python extensions 2015-06-03 10:08:07 -07:00
Gregory L. Lee
6dffe2ddd1 updated url 2015-06-03 10:07:21 -07:00
Gregory L. Lee
74b0a9c059 updated Python extension versions 2015-06-01 08:39:01 -07:00
Gregory L. Lee
83af842a74 fixed cython activation conflict 2015-06-01 08:38:32 -07:00
Todd Gamblin
f813d823a1 Merge branch 'features/optional-deps' into develop 
This includes:
- Much better variant support (+debug/-debug)
- Optional dependency support (depends_on(... , when='<condition>')
- New config file format (YAML in ~/.spack)
- New Spec format (YAML in $prefix/.spack/spec.yaml)
 2015-05-18 16:16:20 -07:00
Matthew LeGendre
46b91ddf57 YAML config files for compilers and mirrors 2015-05-18 16:01:21 -07:00
Gregory L. Lee
50970b72d8 added py-pandas 2015-05-12 13:47:48 -07:00
Todd Gamblin
cd5fa128c5 Work on SPACK-41: Optional dependencies work for simple conditions. 
- Can depend conditionally based on variant, compiler, arch, deps, etc
  - normalize() is not iterative yet: no chaining depends_ons
  - really need a SAT solver, but iterative will at least handle
    simple cases.

- Added "strict" option to Spec.satisfies()
  - strict checks that ALL of other's constraints are met (not just
    the ones self shares)
  - Consider splitting these out into two methods: could_satisfy() and
    satisfies()
    - didn't do this yet as it would require changing code that uses
      satisfies()

- Changed semantics of __contains__ to use strict satisfaction (SPACK-56)

- Added tests for optional dependencies.

- The constrain() method on Specs, compilers, versions, etc. now
  returns whether the spec changed as a result of the call.
 2015-05-12 09:56:59 -07:00
Todd Gamblin
ef9deeccd1 Merge branch 'features/yaml-spec' into features/optional-deps 2015-05-10 19:28:47 -07:00
Todd Gamblin
43e5465592 Fix bug in directory layout hidden files() 2015-05-10 17:56:27 -07:00
Todd Gamblin
3b1898b8e4 Fix SPACK-40: Finish adding variant directive. 
- Variants are now declarable in packages using the variant() directive.
- Variants are checked - you can't just ask for a random variant, it has to be declared.
- conditional logic (@when, if, '+debug' in spec, etc.) still required in package to
  implement variant.
 2015-05-10 12:24:03 -07:00
Cyrus Harrison
8c4fe6d249 added simple spack package files for uncrustify and cppcheck 2015-04-30 22:42:53 -07:00
Alfredo Gimenez
0f5b26c9cd MemAxes and Mitos 2015-04-09 14:46:33 -07:00
Todd Gamblin
37a5c3b09f Version bump for adept-utils 2015-04-01 00:05:26 -07:00
Matthew LeGendre
89731d4a7d Add binutils as a gcc dependency so it doesn't use the system linker/assembler. 2015-03-30 14:23:02 -07:00
Matthew LeGendre
50687e08cb Fix QT with gcc 4.9 build error where QT's -Wl,--no-undefined interfered with gcc's implicit libgcc_s.so library 2015-03-27 17:32:37 -07:00
Todd Gamblin
c10773503b Merge branch 'benjaminwalters-develop' into features/blas 
Conflicts:
	var/spack/packages/lapack/package.py
 2015-03-26 00:31:34 -07:00
Todd Gamblin
fa53bb835c Merge branch 'kev40293-develop' into features/blas 2015-03-26 00:12:41 -07:00
Benjamin Walters
1b75b34eb6 Removed subprocess.call calls and replaced with spack symlink calls 2015-03-19 04:37:21 -05:00
Benjamin Walters
3d2df174d1 Added package files for Lapack (has virtual dependency blas) and Netlib blas (provides virtual dependency blas). 2015-03-19 03:20:24 -05:00
Todd Gamblin
32244ac733 MPICH provides environment vars to make MPI compilers behave like spack. 2015-03-13 13:32:24 -07:00
Todd Gamblin
b80e091f46 metis package. 2015-03-13 00:03:33 -07:00
Todd Gamblin
32e2f21e8d Working scotch package. 2015-03-12 08:49:45 -07:00
Todd Gamblin
81d518438c Point ravel download at the github release page. 2015-03-12 06:54:15 -07:00
Todd Gamblin
b24aca6da2 Add -Wno-dev to avoid cmake policy warnings. 2015-03-12 06:54:15 -07:00
Todd Gamblin
e624ebec07 Working ravel package. 2015-03-12 06:54:15 -07:00
Todd Gamblin
14a79a2ddf Add OTF package. 2015-03-12 06:54:14 -07:00
Todd Gamblin
d6c14f40b2 SAMRAI builds on cab with new URL. 2015-03-11 19:14:43 -07:00
Todd Gamblin
f8044e0290 SAMRAI URL update. 2015-03-11 18:58:29 -07:00
Todd Gamblin
fbebb94cd6 Add cram package. 2015-03-05 11:05:42 -08:00
Todd Gamblin
30e45df8a5 Updates to atlas packages. 2015-03-04 09:34:42 -08:00
Kevin Brandstatter
8921d52a82 Working lapack install linking to installed ATLAS 2015-03-03 22:27:16 -06:00
Kevin Brandstatter
0de021d427 Added LAPACK package file that depends on and builds against ATLAS 2015-03-03 19:21:02 -06:00
Kevin Brandstatter
08f37d478f Removed FIXME comments from atlas 2015-03-01 21:26:37 -06:00
Kevin Brandstatter
2f2eab0e15 Merge branch 'develop' of github.com:kev40293/spack into develop 2015-02-26 14:42:12 -06:00
Kevin Brandstatter
bbfc519ee5 Added packaging files for ATLAS with and without netlib's LAPACK 2015-02-26 14:41:46 -06:00
Todd Gamblin
ffdb90f39a Last minute Qt bugfix. 2015-02-24 10:42:35 -08:00
Todd Gamblin
daef78f538 Update packaging documentataion. 2015-02-23 10:31:22 -08:00
Saravan Pantham
14e70ad689 Added netcdf package support. 2015-02-18 18:05:57 -08:00
Todd Gamblin
c7b8a4e25c Fix for SPACK-46: cleanup spack clean, spack restage. 2015-02-18 14:00:37 -08:00
Todd Gamblin
db11373351 Resurrect combined qt4/5 package from b7dacb 2015-02-18 13:16:22 -08:00
Gregory L. Lee
59198e29f9 Merge branch 'develop' of ssh://cz-stash.llnl.gov:7999/scale/spack into develop 2015-02-18 13:14:26 -08:00
Gregory L. Lee
6e13d0985c fixed deps for python packages 2015-02-18 13:13:19 -08:00
Todd Gamblin
3e5aa4b0f5 llvm/clang version bump 2015-02-18 10:59:03 -08:00
Todd Gamblin
959ce4f985 Downgrade standard version of ImageMagick to a non-changing URL. 
- bleeding edge still available but commented by default.
 2015-02-18 10:59:03 -08:00
Gregory L. Lee
44003449d5 fixed install steps for version 4 2015-02-17 16:26:00 -08:00
Todd Gamblin
17ac609d23 Merge branch 'features/memaxes' into develop 
Conflicts:
	var/spack/packages/libpng/package.py
 2015-02-17 00:49:52 -08:00
Todd Gamblin
724b72bdaf take out dyninst 8.2 for now. 
- doesn't build correctly with boost 1.55
 2015-02-17 00:47:35 -08:00
Todd Gamblin
4af85441db Merge branch 'features/python-modules' into develop 2015-02-17 00:44:02 -08:00
Todd Gamblin
57f331e2ac Ignore conflicting nose tests in py-nose and py-matplotlib. 2015-02-17 00:22:18 -08:00
Todd Gamblin
67db8ddca8 Factor ignore logic into a predicate builder. 2015-02-17 00:21:15 -08:00
Todd Gamblin
06d6b0b205 More py-setuptools dependencies added. 2015-02-16 21:53:55 -08:00
Todd Gamblin
13376efafc Add package-specific rpath back to shiboken and pyside. 2015-02-16 21:53:34 -08:00
Todd Gamblin
614c22fc1b Allow forced deactivation -- best effort unlinking 
spack deactivate -f will unlink even if Spack thinks the package isn't enabled.
Made deactivate routines idempotent.
 2015-02-16 12:41:22 -08:00
Todd Gamblin
8aa3afcfde Python package cleanup. 
- Added a number of dependencies to python packages.
- Python packages may still not build without some OS support.
- Example: Numpy needs ATLAS, and will use a system ATLAS install.
  - Atlas requires turning off CPU throttling to build.
  - can't do this as a regular user -- how to build ATLAS with Spack
  - currnetly relying on a system ATLAS install.
 2015-02-15 23:04:20 -08:00
Todd Gamblin
847ed8ad39 Add libxslt, cleanup libxml2. 2015-02-15 23:04:04 -08:00
Todd Gamblin
b86eb69552 libgcrypt and libgpg-error packages. 2015-02-15 23:03:33 -08:00
Todd Gamblin
65d60f92f5 qhull package. 2015-02-15 23:02:51 -08:00
Todd Gamblin
36579844d9 Add Tcl/Tk packages. 2015-02-15 23:02:36 -08:00
Todd Gamblin
ce011501f9 Add R package. 2015-02-15 23:02:21 -08:00
Todd Gamblin
b11061f99d Rename py-pyqt4 to py-pyqt. 2015-02-15 12:40:02 -08:00
Todd Gamblin
2f67cdaf10 Better time output on build completion. 2015-02-15 12:39:10 -08:00
Todd Gamblin
3c0048dd89 py-sip installs properly into a prefix 2015-02-15 01:59:36 -08:00
Todd Gamblin
c0c0879924 Better extension activation/deactivation 2015-02-15 01:58:35 -08:00
Todd Gamblin
0c94a6e2b0 Merge branch 'features/python-modules' into features/memaxes 
Conflicts:
	var/spack/packages/qt/package.py
 2015-02-12 10:01:58 -08:00
Gregory L. Lee
5c2608b032 typo: Self -> self 2015-02-09 15:55:18 -08:00
Todd Gamblin
25af341954 Python package improvements. 2015-02-09 02:54:49 -08:00
Alfredo Gimenez
27617670f0 qt with hardware accelerated opengl working 2015-02-09 00:01:07 -08:00
Todd Gamblin
20ec80295d setup_extension_environment is now setup_dependent_environment. 
- other packages, like Qt, can now use this to set up relevant build
  variables and env vars for their dependencies.

- not just extensions anymore.
 2015-02-08 19:41:17 -08:00