Commit graph

26504 commits

Author SHA1 Message Date
Ryan Marcellino
62596fb796
py-f90wrap: new version (#31174) 2022-06-17 17:09:34 -06:00
Brian Van Essen
15c35a3cff
Bugfix external find --all for libraries (#31186)
* Fixed a bug in the 'external find --all' command where the call failed
to find packages by both executable and library. The bug was that the
call `path.all_packages()` incorrectly turned the variable
`packages_to_check` into a generator rather than keeping it a list.
Thus the second call to `detection.by_library` had no work to do.

* Fixed the help message for the find external and compiler commands as
well as others that used the `scopes_metavar` field to define where
the results should be stored in configuration space.  Specifically,
the fact that configuration could be added to the environment was not
mentioned in the help message.
2022-06-17 21:52:06 +00:00
Brian Van Essen
249c90f909
Added the ecp and radiuss tags to the LBANN software stack packages. (#31188) 2022-06-17 21:25:50 +00:00
Kyle Gerheiser
043b2cbb7c
Fix external compiler detection for MPICH and OpenMPI (#30875)
os.path.dirname was being used to compare compilers. If two compilers
are in the same directory then it will pick up the first one it encounters.

Compare the full compiler path instead.
2022-06-17 14:01:49 -06:00
Bernhard Kaindl
aedf215b90
openssh: don't suid-install ssh-keysign (not used by default) (#31083) 2022-06-17 12:09:52 -06:00
Mikhail Titov
eed4a63be7
rct: update packages (RE, RG, RP, RS, RU) with new versions (#31172) 2022-06-17 10:44:22 -07:00
Massimiliano Culpo
13b609b4b6
docs: quote string to show valid YAML (#31178)
fixes #31167
2022-06-17 18:25:52 +02:00
Chuck Atkins
85dc20cb55
Spec: Add a new virtual-customizable home attribute (#30917)
* Spec: Add a new virtual-customizable home attribute

* java: Use the new builtin home attribute

* python: Use the new builtin home attribute
2022-06-17 10:29:08 -04:00
Massimiliano Culpo
667c39987c
py-setuptools: install setuptools from wheels directly (#31131)
When installing setuptools from sources in Spack, we might
get into weird failures due to the way we use pip.

In particular, for Spack it's necessary to install in a
non-isolated pip environment to allow using PYTHONPATH as a
selection method for all the build requirements of a
Python package.

This can fail when installing setuptools since there might
be a setuptools version already installed for the Python
interpreter being used, with different entry points than
the one we want to install.

Installing from wheels both pip and setuptools should
harden our installation procedure in the context of:
- Bootstrapping Python dependencies of Spack
- Using external Python packages
2022-06-17 10:42:28 +02:00
Cyrus Harrison
f35d8c4102
vtk-h: use cmake base pkg, overhaul recipe (#28898)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-06-17 09:59:57 +02:00
Sreenivasa Murthy Kolam
6ac3186132
Support 'spack external find' for rocm packages (#30792) 2022-06-17 09:34:49 +02:00
Robert Cohn
466572dc14
Update Intel package descriptions (#31150) 2022-06-17 09:23:40 +02:00
Harmen Stoppels
1c0bf12e5b
openssl package: default to mozilla certs (#31164)
On Cray systems that use Cray Data Virtualization Service (DVS),
symlinks across filesystems are not allowed, either due to a bug, or
because they're simply not POSIX compliant [1].

Spack's OpenSSL package defaults to `certs=system` which comes down to
symlinking `/etc/ssl` in the Spack install prefix, triggering this
problem, resulting in mysterious installation failures.

Instead of relying on system certs, we can just use
`ca-certificates-mozilla`, and if users really need system certs, then
they're probably better off marking OpenSSL entirely as external.

[1] https://github.com/glennklockwood/cray-dvs
2022-06-16 23:25:32 -06:00
Adam J. Stewart
bf990bc8ec
py-sphinx: add v5, maintainer (#31171) 2022-06-16 20:41:31 -06:00
Massimiliano Culpo
267358a799
ASP-based solver: fix rules on version weights selection (#31153)
* ASP: sort and deduplicate version weights from installed specs

* Pick version weights according to provenance

* Add unit test
2022-06-16 14:17:40 -07:00
Peter Scheibel
392b548312
Manifest parsing: avoid irrelevant files (#31144)
* Manifest directory may not contain manifest files: exclude non-manifest files
* Manifest files use different name for rocmcc: add translation for it
2022-06-16 15:16:48 -05:00
Elizabeth Sherrock
8c3b82c140
New packages: py-ford and dependencies (#31107)
* Created package and added description

* Add py-markdown-include

* Created package

* Finished creating package

* Added py-md-environ

* Added build dependencies

* Added other deps

* Add python-markdown-math (#4)

* Created package and started to add info

* Removed unneeded global/install options

* Figured out version spec for markdown-math

* Removed type=build from unnecessary dependencies

* Removed unneeded install/global options, added version spec to dependency

* Added wscullin as interim maintainer for packages

* Fixed style issues

* Took care of trailing whitespace

* Removed comment line before imports

* Changed file charset to match other packages

* Update var/spack/repos/builtin/packages/py-ford/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-ford/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Removed test dependency after review feedback

* Added new 6.1.12 version to py-ford

Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-06-16 12:14:40 -07:00
Qian Jianhua
2e4b533420
rpcsvc-proto: add 'cpp' path for rpcgen (#31157) 2022-06-16 18:24:28 +00:00
Mark Abraham
3b393fe0eb
Add LevelZero variant to hwloc package (#31161)
* Add LevelZero variant to hwloc package

This permits the hwloc package to build with with support for the
Intel Level Zero low-level layer, analogous to CUDA, ROCm, and OpenCL.

* Fix typo
2022-06-16 12:21:36 -06:00
Massimiliano Culpo
895ceeda38
concretize.lp: impose a lower bound on the number of version facts if a solution exists (#31142)
* concretize.lp: impose a lower bound on the number of version facts if a valid version exists

fixes #30864

* Add a unit test
2022-06-16 09:25:56 -07:00
Satish Balay
6f1e3a4ad3
xsdk-examples: use 'parallel=False' with tests - as they may fail with a large '-j'[when used with +cuda] (#31138) 2022-06-16 07:50:45 -07:00
iarspider
ce41b7457b
Xerces-C: Add option to disable transcoder (#31162)
* Xerces-C: Add option to disable transcoder

* Update package.py

* Apply suggestion from review

* Flake-8
2022-06-16 10:40:03 -04:00
G-Ragghianti
4f9f56630b
slate, blaspp, lapackpp: new versions (#31147)
* Adding new release for slate, blaspp, and lapackpp

* Setting release tar file hashes

* New slate release
2022-06-16 08:09:42 -04:00
Rob Falgout
e216ba1520
hypre: new version 2.25.0 (#31146) 2022-06-16 08:07:30 -04:00
Massimiliano Culpo
4fd5ee1d9d
CI: test binary bootstrapping of clingo on all macOS versions (#31160) 2022-06-16 07:26:20 -04:00
Mosè Giordano
89f32d51f3
grid: add new package (#31133) 2022-06-16 09:00:09 +02:00
Manuela Kuhn
3b3be70226
r-httpuv: fix zlib dependency (#31121) 2022-06-15 20:22:58 -05:00
Chuck Atkins
95888602f2
mesa: Match rtti settings with the libllvm dependency (#31145)
* llvm-amdgpu: Update the libllvm version provided

* mesa: Match configure rtti settings to the libllvm dependency
2022-06-15 17:29:33 -06:00
Wileam Y. Phan
0205fefe0c
googletest: use URLs with .tar.gz extension (#31129) 2022-06-15 18:21:44 +00:00
Tom Scogland
b261b2a5ff
Allow bootstrapping to work when partial or incompatible modules exist in the module path (#31035) 2022-06-15 19:09:07 +02:00
Ryan Mast
8c58c14c3d
helics: add v2.8.1 (#31134) 2022-06-15 09:27:50 +02:00
SXS Bot
f7b4d488c3
spectre: add v2022.06.14 (#31135)
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
2022-06-15 09:27:10 +02:00
Sreenivasa Murthy Kolam
38a8d4d2fe
ROCm support to build py-torch (#31115)
* rocm support to build py-torch

* rocm support to build py-torch
2022-06-14 15:56:11 -07:00
Robert Underwood
1ceee714db
sz: smoke, unit, version updates, and more oh my (#30873)
Co-authored-by: Robert Underwood <runderwood@anl.gov>
2022-06-14 16:53:47 -06:00
Brian Van Essen
5b3e4ba3f8
Fixed bad hashes for recent versions and added v8.4.0 (#31038) 2022-06-14 22:05:44 +02:00
snehring
37426e41cb
wget: fixing compilation issue with gcc11+ on rhel7 (#30858) 2022-06-14 16:03:02 +00:00
Sergey Kosukhin
a05e729e1b
mpich: remove libtool patches (#30769) 2022-06-14 16:29:22 +02:00
Mikael Simberg
f8a6799e67
apex: fix compilation with binutils (#30638) 2022-06-14 16:04:53 +02:00
Maciej Wójcik
633ebd149c
dbcsr: add versions up to v2.2.0 (#30891)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-06-14 15:08:13 +02:00
G-Ragghianti
bf6220821b
Make the IntelPackage fail successfully (#30773)
Co-authored-by: Robert Cohn <rscohn2@gmail.com>
2022-06-14 15:06:06 +02:00
Sebastian Ehlert
3db96aa892
simple-dftd3: add package and dependencies (#31046)
- add simple-dftd3 (version 0.6.0, 0.5.1)
- add mctc-lib (version 0.3.0)
- add toml-f (version 0.2.3)
- update dftd4 (version 3.4.0, use mctc-lib as actual dependency)
- update json-fortran (version 8.*, make static library PIC)
2022-06-14 15:05:01 +02:00
Jim Galarowicz
c7628d768a
survey: add v1.0.5 (#31053) 2022-06-14 14:56:51 +02:00
haralmha
e1ad926189
vectorclass-version2: move files to include folder (#31105) 2022-06-14 14:54:16 +02:00
dlkuehn
8705735c74
gemma: add new package. (#31078)
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-06-14 12:53:14 +00:00
Hadrien G
d82fa045d5
acts: add v19.2 (#31108) 2022-06-14 12:45:03 +00:00
Richard Berger
c72d51cb3a
legion: add HIP support (#31080) 2022-06-14 13:49:33 +02:00
Qian Jianhua
d76f184430
hybrid-lambda: fix build tests (#30214) 2022-06-14 13:46:23 +02:00
Seth R. Johnson
19ea24d2bd
hdf5: add conflict for broken @1.8.22+fortran+mpi (#31111) 2022-06-14 13:42:48 +02:00
Bernhard Kaindl
83efea32f4
openssh: enable authentication via Kerberos through GSSAPI (#31086)
Add variant +gssapi to enable authentication via Kerberos through GSSAPI

When openssh is installed at sites using Kerberos, openssh needs to auth
via Kerberos through GSSAPI in order to work in such environments.
2022-06-14 13:41:32 +02:00
Mark Olesen
bc577f2dee
openfoam: update v2112 to latest patch (#31113)
Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2022-06-13 21:21:42 -06:00