Commit graph

35057 commits

Author SHA1 Message Date
John W. Parent
749301d133
MSVC: Broken ifx needs new $TMP (#42155)
Certain versions of ifx (the majority of those available) have an issue
where they are not compatible with TMP directories with dot chars
This precludes their use with CMake.
Remap TMP to point to the stage directory rather than whatever the TMP
default is
2024-01-30 10:18:54 -08:00
Massimiliano Culpo
a20c0de6d8
ns-3-dev: rewrite the package to use CMake (#34207) 2024-01-30 17:57:27 +01:00
dependabot[bot]
ad2ae63745
build(deps): bump pytest from 7.4.4 to 8.0.0 in /lib/spack/docs (#42361)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.4.4 to 8.0.0.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/7.4.4...8.0.0)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-01-30 08:23:50 -07:00
dependabot[bot]
d56ca4f107
build(deps): bump black from 24.1.0 to 24.1.1 in /lib/spack/docs (#42360)
Bumps [black](https://github.com/psf/black) from 24.1.0 to 24.1.1.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.1.0...24.1.1)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-01-30 15:23:42 +00:00
dependabot[bot]
e09c3ddec2
build(deps): bump black in /.github/workflows/style (#42359)
Bumps [black](https://github.com/psf/black) from 24.1.0 to 24.1.1.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.1.0...24.1.1)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-01-30 15:23:30 +00:00
Massimiliano Culpo
1882920c97
elsi: cleanup recipe (#42355) 2024-01-30 14:08:10 +01:00
Matthias Wolf
b70cb60b65
py-bluepyefe, py-igor2: new version, new package igor2 (#42191) 2024-01-30 03:29:07 -07:00
Adam J. Stewart
6a1e64f531
py-black: add v24.1.1 (#42343) 2024-01-30 03:14:02 -07:00
Nathalie Furmento
5217b20901
starpu: add release 1.4.3 (#42339) 2024-01-30 03:09:21 -07:00
James Beal
ed37969925
singularityce: add v4.x (#42347)
Co-authored-by: James Beal <jb23@sanger.ac.uk>
2024-01-30 03:08:57 -07:00
Henrik Finsberg
32230e6520
Add fenics development version and ufl-legacy (#42182)
* Add fenics development version and ufl-legacy

* Make sure python and setuptools are added to ufl-legacy and add version 2022.3.0 as well

* Run black and add maintainer to fenics package

* Fix typo

* Use Fiat version 2019.1.0

* Run black

* Add back master branch of fiat

* Remove master from the list of dolfin versions and add one extra line of each deps instead

* Run black

* Do not specify python version in ufl-legacy

* Remove python dependency from ufl-legacy

* Remove python dependency from ffc

* Add special case for master in ffc

* Run black

* Remove master from loop in ffc

* Run black again
2024-01-30 02:49:51 -07:00
Brad Geltz
7a712a11b9
geopm-service: New package and deprecate geopm (#41788)
* geopm: Mark all as deprecated

- This recipe will be removed in a future release.

Signed-off-by: Brad Geltz <brad.geltz@intel.com>

* Add py-sphinx-emoji

Signed-off-by: Brad Geltz <brad.geltz@intel.com>

* Add py-dasbus

Signed-off-by: Brad Geltz <brad.geltz@intel.com>

* py-pygobject: Add v3.46.0

- Previous versions error during build phase.

Signed-off-by: Brad Geltz <brad.geltz@intel.com>

* py-sphinx-tabs: Add new versions

Signed-off-by: Brad Geltz <brad.geltz@intel.com>

* Add geopm-service

- Previous geopm package is now 2 packages:
  geopm-service and geopm-runtime.
- The GEOPM service is designed as a systemd/dbus
  service providing a userspace interface to
  privileged hardware telemetry and configurations.
- Installing via spack will enable some userspace
  testing, but generally most users will want to
  install the GEOPM service via the system package
  manager as root to get full functionality.
- This recipe will enable the creation of the fully
  userspace geopm-runtime recipe which will replace
  the old geopm recipe.

Signed-off-by: Brad Geltz <brad.geltz@intel.com>

---------

Signed-off-by: Brad Geltz <brad.geltz@intel.com>
2024-01-30 02:49:33 -07:00
Peter Scheibel
e63d8e6163
"spack logs": print log files for packages (either partially built or installed) (#42202) 2024-01-30 10:42:00 +01:00
Alex Leute
461a9093cd
py-textual: Added package py-textual (#42291)
* py-textual: New package py-textual

* py-textual: Depend on py-mdit-py-plugins

* py-textual: Added dependency on python@3.8:3

* py-textual: Added a comment about why there is a dependency on
py-mdit-py-plugins

* py-textual: Ran black

---------

Co-authored-by: Alex C Leute <aclrc@rit.edu>
2024-01-30 03:19:39 -06:00
Caetano Melone
8edb6ff22a
py-pytest-aiohttp: add package (#42313)
* add pytest-aiohttp

* black

* py-setuptools -> py-setuptools-scm

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-01-30 03:18:32 -06:00
Massimiliano Culpo
1f44be83af
Add a PR template with a reference to spackbot commands (#42349) 2024-01-30 09:43:04 +01:00
Benjamin Fovet
1be078d01d
gmsh: add v4.12.0 (#41854)
* disable building gmsh with oce for recent versions

Co-authored-by: Benjamin Fovet <benjamin.fovet@cea.fr>
2024-01-30 08:37:37 +01:00
Cristian Le
c07cde3308
Bump spglib version (#42340) 2024-01-29 16:06:29 -07:00
John W. Parent
dda8b1a5b8
VTK package: improve dependency-detection on Windows (#42300)
VTK struggles to consume some Spack-derived packages on Windows:
Patch VTK to allow a smoother integration

Also add install for examples as they are not part of the install
interface.
2024-01-29 14:42:36 -08:00
John W. Parent
ba45277640
gl2ps package: build only one of shared/static on Windows (#36576)
gl2ps tries to build static and shared libs simultaneously with
the same target name on the generator side. This causes a name
clash issue for Ninja on Windows (where the extension is .lib
in both cases).

Add a variant on Windows to force building only one of shared
or static, and patch the CMake build to enable use of this
variant.
2024-01-29 11:49:55 -08:00
Zack Galbreath
f03ae39fd1
Update GitLab memory requests (#42351)
* gitlab: remove commented-out duplicate entries

* gitlab: reclassify some packages from "huge" to "large"

Our observed max memory usage for these packages is as follows:

hipblas: 7.7G
qt: 6.6G
visit: 9.7G

All of these should fit within a "large" request (currently 12G).

* gitlab: remove pango from list of huge packages

This package is not currently built by any of our CI stacks.

* gitlab: update requests for high memory packages

Refine resource requests for memory-intensive packages based on
max memory usage data.
2024-01-29 19:28:58 +00:00
Arne Becker
62145122be
perl-sql-translator: New package (#42319)
- Adds perl-sql-translator and its missing deps:
- Adds perl-import-into
- Adds perl-package-variant
- Adds perl-strictures

Built with build-time tests and comes with a simple run-time test.
2024-01-29 10:36:25 -08:00
Gilles Grospellier
44e33c3eb9
dotnet-core-sdk: Update to version 6.0.25 and add binaries for 'aarch64'. (#41739) 2024-01-29 10:10:58 -08:00
fpruvost
ed5ed3e31e
Add fabulous, maphyspp, paddle packages. (#42287) 2024-01-29 10:06:35 -08:00
dependabot[bot]
cc866efba1
build(deps): bump dorny/paths-filter from 2.11.1 to 3.0.0 (#42294)
Bumps [dorny/paths-filter](https://github.com/dorny/paths-filter) from 2.11.1 to 3.0.0.
- [Release notes](https://github.com/dorny/paths-filter/releases)
- [Changelog](https://github.com/dorny/paths-filter/blob/master/CHANGELOG.md)
- [Commits](4512585405...0bc4621a31)

---
updated-dependencies:
- dependency-name: dorny/paths-filter
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-01-29 16:38:23 +01:00
Martin Diehl
f550262efb
update damask to 3.0.0-beta (#42259) 2024-01-29 09:33:22 -06:00
Harmen Stoppels
890ec8d71c
traverse: w/o deptype (#42345)
Add the empty deptype `spack.deptypes.NONE`.

Test the case `traverse_nodes(deptype=spack.deptypes.NONE)` to not
traverse dependencies, only de-duplicate.

Use the construct in environment views that otherwise would branch on
whether deps are enabled or not.
2024-01-29 16:31:50 +01:00
dependabot[bot]
62ed5ee318
build(deps): bump codecov/codecov-action from 3.1.4 to 3.1.5 (#42295)
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3.1.4 to 3.1.5.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](eaaf4bedf3...4fe8c5f003)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-01-29 16:27:44 +01:00
Mosè Giordano
0a10ff70bc
openblas: use ARMV8SVE when target supports SVE feature (#42107) 2024-01-29 08:20:32 -07:00
Harmen Stoppels
0718e3459a
filesystem: cleanup (#42342)
Type hints and removal of unused code
2024-01-29 14:43:17 +00:00
Rocco Meli
7ec93a496d
MDAnalysis: add v2.7.0 (#41907)
* ensure umpire~cuda~rocm when ~cuda~rocm

* MDAnalysis: add v2.7.0

* Apply suggestions from code review

* license

* review changes

* add gsd and py-cmake versions

* Update package.py

* py-cmake

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fix and reorder

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-01-29 08:31:34 -06:00
Brian Vanderwende
2170386ad9
Improve NCL variant support and fix hdf-eos5 issues (#41259) 2024-01-29 15:28:32 +01:00
WuK
6c48effbf5
add py-vl-convert-python (#42073)
* add py-vl-convert-python

* code format

* Update package.py

add homepage

* Update var/spack/repos/builtin/packages/py-vl-convert-python/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* remove old versions, add todo

* Update var/spack/repos/builtin/packages/py-vl-convert-python/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* remove blank line

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-01-29 08:18:42 -06:00
Wouter Deconinck
97e3da0e3e
ncurses: fix 5.9 and 6.0 on modern compilers (#41982) 2024-01-29 15:18:25 +01:00
Alex Leute
d6ff81ab4d
py-metrics: Adding package py-metrics (#42220)
* New package: py-metrics

* [py-metrics] cleaned up extra comment

* Updated copyright and ran black

* py-pathspec: Added version 0.5.5

---------

Co-authored-by: vehrc <vehrc@rit.edu>
Co-authored-by: Jen Herting <jen@herting.cc>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2024-01-29 08:14:03 -06:00
Sam Grayson
6dfc2e7075
openldap: add findutils build dep (#42159) 2024-01-29 15:06:57 +01:00
Matthias Wolf
80e36d47c2
py-frozendict: patch up for Python 3.11 (#42192)
* py-frozendict: patch up for Python 3.11

See also Marco-Sulla/python-frozendict#68, rely on a pure Python
implementation when 3.11+ is used.

* mention related Github issue
2024-01-29 08:03:46 -06:00
snehring
e1826f89d4
tbl2asn: adding runtime dep libidn (#42171) 2024-01-29 14:59:10 +01:00
kjrstory
23df20fe6d
of-precice: add new versions, update run environment (#40479) 2024-01-29 14:57:16 +01:00
Wouter Deconinck
10ef7a0466
containers: switch to quay.io/almalinuxorg images (#42193) 2024-01-29 14:55:56 +01:00
Alec Scott
7eba7d4028
go: simplify dependency on git to only run (#42208) 2024-01-29 14:49:45 +01:00
Dani
b09d741aed
new builtin package: py-biobb-common (#41993)
* new builtin package: biobb-common

* removed whitespace for the style test

* replaced ' by " for the style test

* changed import line for the style test

* Update var/spack/repos/builtin/packages/biobb-common/package.py

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>

* Update var/spack/repos/builtin/packages/biobb-common/package.py

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>

* Update var/spack/repos/builtin/packages/biobb-common/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* removed test

* using pypi instead of git

I hope this is declared the right way.
I tried to test it locally but I am having problems with a dependency (openblas) thus I can not even try if this works.

* upgraded version

* Added py prefix

* removed biopython version restriction

* directory with new py-prefixed name

* Delete old non-prefixed package

* Update var/spack/repos/builtin/packages/py-biobb-common/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-01-29 13:52:57 +01:00
Sergey Kosukhin
594069961a
netcdf-fortran: fix static linking in some cases (#35466)
* netcdf-fortran: enable building against static netcdf-c

* netcdf-fortran: strip the output of nc-config
2024-01-29 12:53:13 +01:00
Sean Koyama
9eb445f0a2
singularityce: add v3.11.4, v3.11.5 (#42251)
Co-authored-by: Servesh Muralidharan <smuralidharan@anl.gov>
2024-01-29 12:31:39 +01:00
Sean Koyama
e791f61c52
gnuplot: add v5.4.10, v6.0.0 (#42252)
Co-authored-by: Servesh Muralidharan <smuralidharan@anl.gov>
2024-01-29 12:30:47 +01:00
Thomas Madlener
b074e18402
py-jupytext: Add version 1.16 and update dependencies (#41552)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-01-29 12:26:58 +01:00
Alex Seaton
5b6a289d30
Added heyoka and mppp packages (#41839) 2024-01-29 11:03:48 +01:00
Jonathon Anderson
8e9bce44cc
opencl-c-headers: install with CMake (#42173) 2024-01-29 10:47:52 +01:00
Ye Luo
7242238a25
quantum_espresso: relax constrait to allow +openmp ^elpa~openmp (#42322) 2024-01-29 10:41:52 +01:00
Mikael Simberg
ef26ee3f1f
pika: Add 0.22.1 (#42338) 2024-01-29 02:37:56 -07:00