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Author SHA1 Message Date
Manuela Kuhn
4cfe58651a
py-docutils: add 0.19 (#32814) 2022-10-06 04:29:48 -06:00
eugeneswalker
a56cd8ffb6
e4s ci: add charliecloud (#32990) 2022-10-06 12:22:23 +02:00
Sreenivasa Murthy Kolam
5cf05b6515
mlirmiopen: update the SHA for 5.2.1 release (#33049) 2022-10-06 03:54:03 -06:00
Harmen Stoppels
fc5da74998
docs: fix deprecated use of install_tree (#33004) 2022-10-06 09:45:46 +00:00
iarspider
0bc23d8bdc
Add checksum for py-markupsafe 2.1.1 (#33003) 2022-10-06 03:42:01 -06:00
iarspider
5fc0bef4fc
Add checksum for py-avro 1.11.1 (#32979) 2022-10-06 03:26:07 -06:00
iarspider
0184f008f1
Add checksum for py-autopep8 1.7.0, py-pycodestyle 2.9.1 (#32978) 2022-10-06 03:22:06 -06:00
Mark W. Krentel
e8dcfcd7ae
hpcviewer: add v2022.10 (#33041) 2022-10-06 03:18:04 -06:00
dependabot[bot]
bfd848089f
build(deps): bump actions/checkout from 3.0.2 to 3.1.0 (#32998) 2022-10-06 02:58:13 -06:00
Wouter Deconinck
887dd3fcd9
dd4hep: add v1.23 (#32968) 
Release notes at https://github.com/AIDASoft/DD4hep/releases/tag/v01-23
 2022-10-06 10:57:09 +02:00
iarspider
96daaa359d
Add checksum for py-soupsieve 2.3.2.post1 (#32980) 
* Add checksum for py-soupsieve 2.3.2.post1

* Update package.py

* Update var/spack/repos/builtin/packages/py-soupsieve/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-10-06 02:53:58 -06:00
Jen Herting
1f5729644b
New package: py-scanpy (#32565) 
* [py-scanpy] New package

* [py-scanpy] Added types

* [py-scan] reworked dependencies

* [py-scanpy] flake8

* [py-scanpy] update import

* [py-scanpy] fixed minor issues

Co-authored-by: James A Zilberman <jazrc@rit.edu>
 2022-10-06 10:27:37 +02:00
iarspider
aab5bcf05a
Add checksum for py-histoprint 2.4.0 (#33017) 2022-10-06 02:22:00 -06:00
iarspider
0ae46519ba
Add checksum for py-hepdata-lib 0.10.1, py-hepdata-validator 0.3.3 (#33018) 
* Add checksum for py-hepdata-lib 0.10.1, py-hepdata-validator 0.3.3

* Update package.py

* Update package.py

* Update package.py

* Update package.py
 2022-10-06 02:14:06 -06:00
Vanessasaurus
270a19504b
flux-core: add v0.44.0 (#33039) 
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
 2022-10-06 02:10:11 -06:00
snehring
6de5f58026
dock: fix compilation with gcc10+, add dep (#33034) 2022-10-06 09:57:14 +02:00
Jean Luca Bez
33b1425add
h5bench: update version (#33000) 
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2022-10-06 09:48:09 +02:00
Jen Herting
071c323b95
New package: py-pprintpp (#30764) 
* New package: py-pprintpp

* [py-pprintpp] added dependency on setuptools

Co-authored-by: Viv Eric Hafener <vehrc@sporcbuild.rc.rit.edu>
 2022-10-06 09:46:32 +02:00
Andrew W Elble
28de7da0cc
cuda: add v11.8.0 (#33027) 
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
 2022-10-06 09:46:01 +02:00
Vanessasaurus
791776cece
flux-sched: add v0.25.0 (#33038) 
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
 2022-10-06 09:41:15 +02:00
Chris White
9ba102c2bb
add blt 0.5.2 (#33029) 2022-10-06 00:02:04 -06:00
Jen Herting
c5d62294b2
New package: py-pyassimp (#30762) 
* New package: py-pyasimp

* Cleaned up dependencies

* Fixed liked issue

* Fixed linked issue

* [py-pyassimp] depends on assimp

* [py-pyassimp] added dependency on py-setuptools

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: Viv Eric Hafener <vehrc@sporcbuild.rc.rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
 2022-10-05 21:43:29 -05:00
Harmen Stoppels
189baa96db
python: don't accidentally link to system db libs (#33007) 2022-10-05 18:22:01 -06:00
snehring
4b17d9b92e
salmon: new version 1.9.0 (#33035) 2022-10-05 17:10:00 -06:00
Charles Ferenbaugh
21ca17a157
pfunit: fix @4: ~openmp (#33024) 2022-10-05 17:03:18 -06:00
iarspider
5b45ffb353
Add checksum for py-threadpoolctl 3.1.0 (#33012) 
* Add checksum for py-threadpoolctl 3.1.0

* Update package.py
 2022-10-05 16:54:04 -06:00
iarspider
143faeee0e
Add checksum for py-distlib 0.3.6 (#33009) 
* Add checksum for py-distlib 0.3.6

* Update package.py

* Update package.py

* Update package.py
 2022-10-05 16:32:56 -06:00
dlkuehn
b4df99376d
Package jsonnet: change sha256sum to sha256 for version hash (#33031) 
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
 2022-10-05 14:40:59 -07:00
Daryl W. Grunau
b2c2958acc
eospac: support version 6.5.5 (#33023) 
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
 2022-10-05 14:08:27 -07:00
snehring
881571c4ba
canu: new version 2.2 (#32999) 2022-10-05 15:06:08 -06:00
Glenn Johnson
aef6d4a40a
add version 4.2.1 of R (#32993) 2022-10-05 13:40:45 -07:00
Adam J. Stewart
760294b402
py-matplotlib: add v3.6.0, new backends (#32697) 
* py-matplotlib: add v3.6.0, new backends
* [@spackbot] updating style on behalf of adamjstewart
* Undo conditional variant hack
* Update dependencies

Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
 2022-10-05 13:36:37 -07:00
Charles Ferenbaugh
417760e829
Fix wonton CMake config to not break host codes (#33026) 2022-10-05 14:06:12 -06:00
MichaelLaufer
e0b418f288
py-pyfr: add v1.15.0, explicitly set env variables for dependencies (#32964) 
* Update to PyFR v1.15.0

* allow unsupported compilers for cuda

* update requirement for py-gimmik version

* update requirement for cuda version

* update versions, style fix

* lib directory changed, style fixes

* PYFR_METIS_LIBRARY_PATH set
 2022-10-05 14:08:37 -05:00
eugeneswalker
1fe8387d23
e4s ci: add gotcha cpu (#32989) 2022-10-05 11:43:13 -07:00
Adam J. Stewart
d956da95c3
py-torch-nvidia-apex: ~cuda does not build (#32939) 2022-10-05 12:38:21 -05:00
Axel Huebl
4ed963dda1
OpenBLAS 0.3.21: w/o Fortran (#32398) 
There is a new OpenBLAS release out that can be compiled w/o
a Fortran compiler.

macOS XCode developers, rejoice. Maybe at some point Spack
becomes a package manager that can be used without using
another package manager (to get gfortran) 🎉

phist: add conflict on reference netlib-lapack due to API change in lapack.h

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2022-10-05 11:30:09 -06:00
eugeneswalker
cefc1dc808
e4s ci: add caliper +cuda (#32992) 2022-10-05 10:25:18 -07:00
eugeneswalker
af02dcbd2e
e4s ci: enable caliper cpu (#32988) 2022-10-05 10:25:04 -07:00
iarspider
1800684ac1
Add checksum for py-flit 3.7.1 (#33013) 2022-10-05 11:41:16 -05:00
eugeneswalker
82cfa68e69
e4s: add omega-h +cuda (#32156) 2022-10-05 09:36:09 -07:00
eugeneswalker
27074d5bec
e4s ci: add unifyfs (#32991) 2022-10-05 09:28:19 -07:00
Wileam Y. Phan
9fe315b953
Make hwloc both CudaPackage and ROCmPackage (#31334) 
* Make hwloc both CudaPackage and ROCmPackage

* Remove redundant variants
 2022-10-05 09:45:47 -06:00
iarspider
592d97137a
Add checksum for py-arrow 1.2.3 (#33005) 2022-10-05 10:38:58 -05:00
iarspider
9abee2e851
Add checksum for py-pydantic 1.10.2 (#33006) 2022-10-05 10:37:50 -05:00
iarspider
e5da747d6f
Add checksum for py-rich 12.5.1 (#33008) 2022-10-05 10:29:30 -05:00
Brian Van Essen
f463666f0e
Add aws-ofi-nccl library (#32906) 
* Added a package for the aws-ofi-nccl plug-in from to enable NCCL to
use libfabric communication library as a network provider.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2022-10-05 14:08:32 +02:00
Jordan Galby
6c12630e95
Optimize concurrent misc_cache provider index rebuild (#32874) 
When concurrent misc_cache provider index rebuilds happen, try to
rebuild it only once, so we don't exceed misc_cache lock timeout.

For example, when using `spack env depfile`, with no previous
misc_cache, running `make -f depfile -j8` could run at most 8 concurrent
`spack install` locking on misc_cache to rebuild the provider index. If
one rebuild takes 30s, before this fix, the "worst" lock could wait up
to 30s * 7, easily exceeding misc_cache lock timeout. Now, the "worst"
lock would take 30s * 1 + ~1s * 6.
 2022-10-05 06:01:59 -06:00
Chris MacMackin
53cea629b7
autotools: Filter libtools when building with dpcpp (#32876) 
Due to a [known
issue](https://community.intel.com/t5/Intel-oneAPI-Data-Parallel-C/dpcpp-and-GNU-Autotools/m-p/1296985)
with dpcpp, autotool-based builds that try to use it will fail because
they try to link against temporary files that no longer exist. This
commit filters those files out of the libtools script so that linking
can work properly.
 2022-10-05 11:57:37 +00:00
iarspider
cfea21319f
Add checksums for Rivet 3.1.7 and YODA 1.9.7 and fastjet 3.4.0 (#32917) 
* Add checksums for Rivet 3.1.7 and YODA 1.9.7

* Add checksum for fastjet 3.4.0

* Add v3.1.7b...

... in which version requirement for autoconf was lowered to 2.68
 2022-10-05 12:54:20 +02:00