Commit graph

35158 commits

Author SHA1 Message Date
Arne Becker
b01f6308d5
perl-json-xsand deps: new packages (#42904)
Adds JSON::XS and its deps:
- Canary::Stability
- Types::Serialiser
2024-02-28 09:30:46 -08:00
eugeneswalker
13709bb7b7
e4s: new packages: glvis, laghos (#42847)
* e4s: new packages: glvis, laghos

* gl: require: osmesa

* be explicit: glvis ^llvm so that llvm-amdgpu not chosen

* glvis fails on oneapi stack due to issue 42839
2024-02-28 09:26:53 -08:00
Harmen Stoppels
661ae1f230
versions: simplify list if union not disjoint (#42902)
Spack merges ranges and concrete versions if they have non-empty
intersection. That is not enough for adjacent version ranges.

This commit ensures that disjoint ranges in version lists are simplified
if their union is not disjoint:

```python
"@1.0:2.0,2.1,2.2:3,4:6" # simplifies to "@1.0:6"
```
2024-02-28 16:33:25 +01:00
Sinan
287e1039f5
package_py_systemd_python_improve (#42865)
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2024-02-28 07:56:17 -06:00
Jonas Eschle
015dc4ee2e
Add package zfit interface (#42666)
* Add package zfit interface

* add maintainer

* [@spackbot] updating style on behalf of jonas-eschle

* Update package.py

* Update package.py

* Update package.py

* [@spackbot] updating style on behalf of jonas-eschle

* Update var/spack/repos/builtin/packages/py-zfit-interface/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

---------

Co-authored-by: jonas-eschle <jonas-eschle@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-28 07:52:40 -06:00
Axel Huebl
46165982b1
C-Blosc2: Fuzzer Tests (#42881)
The fuzzer tests are a bit flaky and have linker issues on
clang. We generally only should build them in testing.
2024-02-27 21:08:33 -07:00
eugeneswalker
c9a111946e
e4s oneapi: remove outdated package preferences (#42875) 2024-02-27 14:35:06 -08:00
renjithravindrankannath
62160021c1
Adding dependency of roctracer-dev and patch in miopen-hip (#42637) 2024-02-27 14:52:47 -07:00
Tom Payerle
3290e2c189
openexr: Add custom libs property (#42274)
Libraries for openexr are named libOpenEXR*.so, etc., so the default libs
handler in spec does not find them.

Add a custom libs property to address this.

Partial fix for #42273

Co-authored-by: payerle <payerle@users.noreply.github.com>
2024-02-27 10:45:29 +01:00
George Young
2a9fc3452a
regtools: add new package (#42852)
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2024-02-27 10:44:34 +01:00
YI Zeping
2ea8a2e6ae
btop: add cmake version restriction (#42835)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-02-27 10:08:22 +01:00
Lydéric Debusschère
fe4a4ddcf9
bazel: allow offline build of major versions 5 and 6 (#41575)
* bazel: allow offline build of major versions 5 and 6; add variant download_data

* bazel: add maintainer LydDeb

* bazel: install offline only; remove variant download_data

* bazel: fix variable name: resource_dico --> resource_dictionary

* bazel: fix style

* bazel: fix the build of version 4

* bazel: add comment about resources

* bazel: access to resource stages with self.stage

* bazel: add except to solve AttributeError: 'Stage' object has no attribute 'resource'

---------

Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2024-02-27 03:03:25 -06:00
Juan Miguel Carceller
c45714fd3c
delphes: use the same C++ standard as in ROOT (#42816)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-02-27 09:54:26 +01:00
Juan Miguel Carceller
523d12d9a8
garfieldpp: Add version 5.0 (#42817)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-02-27 09:54:03 +01:00
Howard Pritchard
5340e0184d
Open MPI: adjust pmix dependency for 5.0.x (#42827)
for various reasons had to advance dependency of 5.0.2 to at least
pmix 4.2.4.  5.0.1 and 5.0.0 can also build with 4.2.4 pmix or newer.

related to #42651

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2024-02-27 09:49:29 +01:00
AMD Toolchain Support
bca7698138
openfoam: add mpfr search paths (#42779)
Co-authored-by: Branden Moore <branden.moore@amd.com>
2024-02-27 09:37:48 +01:00
Peter Scheibel
5c26ce5385
skip test which is causing spurious failures on Windows (#42832) 2024-02-27 09:36:10 +01:00
Eisuke Kawashima
02137dda17
eigenexa: add 2.7–2.12 (#38170) 2024-02-27 09:23:08 +01:00
eugeneswalker
4abac88895
e4s ci: use ubuntu 22.04 images (#42843) 2024-02-27 01:12:53 -07:00
stepanvanecek
79c2a55e00
gpuscout: new package (#42761)
Co-authored-by: Stepan Vanecek <stepan@Stepans-MBP.fritz.box>
2024-02-27 09:05:09 +01:00
Carsten Uphoff
71c169293c
double-batched: add v0.5.0 (#42850)
Signed-off-by: Carsten Uphoff <carsten.uphoff@intel.com>
2024-02-27 08:59:42 +01:00
Wouter Deconinck
bcc5ded205
dd4hep: new version 1.28 (#42846) 2024-02-27 08:50:01 +01:00
Kensuke WATANABE
379a5d8fa0
root: add dependent package required for build time tests (#42849) 2024-02-27 08:43:08 +01:00
Juan Miguel Carceller
d8c2782949
bdsim: use the same C++ standard as in ROOT, add a patch (#42031)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-02-27 08:34:42 +01:00
dependabot[bot]
6dde6ca887
build(deps): bump pytest from 8.0.1 to 8.0.2 in /lib/spack/docs (#42861)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.0.1 to 8.0.2.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.0.1...8.0.2)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-02-27 08:30:03 +01:00
downloadico
8f8c262fb3
picard: add version 3.1.1 (#42862) 2024-02-27 08:29:06 +01:00
afzpatel
93b8e771b6
rocm-gdb: add v6.0.2 (#42855) 2024-02-27 08:22:56 +01:00
Todd Gamblin
48088ee24a
refactor: add type annotations and refactor solver conditions (#42081)
Refactoring `SpackSolverSetup` is a bit easier with type annotations, so I started
adding some. This adds annotations for the (many) instance variables on
`SpackSolverSetup` as well as a few other places.

This also refactors `condition()` to reduce redundancy and to allow
`_get_condition_id()` to be called independently of the larger condition
function.


Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-02-26 22:26:01 +00:00
Mikael Simberg
c7df258ca6
Update camp missing headers patch to be applied with all compilers (#42857) 2024-02-26 12:30:01 -05:00
Erik Heeren
b8e8fa2dcd
py-find-libpython: 0.3.1 (#42853)
* py-find-libpython: 0.3.1

* py-find-libpython: sort versions
2024-02-26 10:07:51 -07:00
Adam J. Stewart
8e885f4eb2
ImageMagick: fewer dependencies on macOS (#42739) 2024-02-26 17:45:29 +01:00
Miranda Mundt
116308fa17
py-pyomo: add v6.7.1 (#42795)
* Update Pyomo spack package for 6.7.1 release

* Apply changes from @adamjstewart

* Update sphinx+Pyomo versions

* Whoops - typo
2024-02-26 10:14:36 -06:00
Adam J. Stewart
5eb4d858cb
Update PyTorch ecosystem (#42819) 2024-02-25 19:20:25 -08:00
eugeneswalker
8dd5f36b68
e4s external rocm ci: use ubuntu 22 image with rocm 5.7.1 (#42842)
* e4s external rocm ci: use ubuntu 22 image with rocm 5.7.1

* comment out slate+rocm due to build error
2024-02-25 17:50:56 -08:00
eugeneswalker
e3ce3ab266
e4s ci: add py-mpi4py, py-numba (#42845) 2024-02-25 17:23:39 -08:00
Jeremy Fix
0618cb98d1
py-ipyvuetify: new package (#42836)
* py-ipyvuetify: new package

* Limit py-jupyter-packing version to 0.7.x

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Fix py-jupyterlab version and type

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Fix py-ipyvue version range to exclude 2

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* rm py-wheel, already considered for PythonPackage

* fix: pynpm only required for build, reorder dependencies as in the pyproject.toml

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-25 07:34:23 -06:00
Maciej Wójcik
3b4a27ce7b
snakemake: new version with plugins (#42713)
* snakemake: add Snakemake 8 with dependencies

* snakemake: add missing description

* Whitespace

* Whitespace

* Whitespace

* Whitespace

* py-conda-inject: add constraint for Python

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-snakemake-executor-plugin-azure-batch: add constraint for Python

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-snakemake-executor-plugin-cluster-generic: add constraint for Python

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-snakemake: add upper bound for Python

* py-snakemake-executor-plugin-drmaa: specify dependency type

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-snakemake-executor-plugin-googlebatch: correct dependency version

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-snakemake-executor-plugin-tes: correct dependency version

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-snakemake-storage-plugin-s3: reorder

* snakemake: remove newly added variants

* snakemake: remove newly added variants

* snakemake: remove newly added variant

* snakemake: update version

* snakemake: update version

* snakemake: whitespace

* py-snakemake-storage-plugin-s3: update version

* snakemake: use newer version

* snakemake: whitespace

* snakemake: update interfaces

* py-snakemake-storage-plugin-gcs: link issue

* snakemake: update versions

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-25 03:47:38 -07:00
Veselin Dobrev
07afbd5619
[laghos] Add a patch for MPI_Session (#42841) 2024-02-24 16:07:59 -07:00
Pranav Sivaraman
5d8cd207ec
zoxide: new package (#42840)
* feat: zoxide package

* Apply suggestions from code review

Co-authored-by: Alec Scott <alec@bcs.sh>

---------

Co-authored-by: Alec Scott <alec@bcs.sh>
2024-02-24 14:53:08 -07:00
Adam J. Stewart
3990589b08
py-lightly: add v1.5.0 (#42820) 2024-02-24 12:27:53 -08:00
dependabot[bot]
38d821461c
build(deps): bump codecov/codecov-action from 4.0.1 to 4.0.2 (#42831)
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 4.0.1 to 4.0.2.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](e0b68c6749...0cfda1dd0a)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-02-24 12:26:30 -08:00
Adam J. Stewart
80b13a0059
py-pandas: add v2.2.1 (#42838) 2024-02-24 12:20:55 -08:00
Maciej Wójcik
ab101d33be
py-azure-...: add new versions (#42742)
* py-azure-core: add new versions

* py-azure-identity: add new versions, flatten dependencies

* py-azure-storage-blob: add new versions

* py-msal: add new versions

* py-azure-...: black is terrible

* py-azure-storage-blob: correct dependency

* Reorder

* Reorder
2024-02-24 12:29:05 -06:00
Sinan
cc742126ef
package/libspatialite: add conflict, new version (#42573)
* package/libspatialite: add conflict, new version

* depends on new version of freexl

* fix bug

* remove manual download stuff

* improve style

* first depracate

* [@spackbot] updating style on behalf of Sinan81

* get rid of conflict, reorder deps

* remove manual download

---------

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@users.noreply.github.com>
2024-02-24 09:29:46 -06:00
Stephen Hudson
a1f21436a4
libEnsemble: add v1.2.1 (#42828) 2024-02-24 09:27:44 -06:00
Alex Richert
95fdc92c1f
Allow awscli-v2 to be installed without examples/ dir (#42773)
* Allow awscli-v2 to be installed without examples/ dir

* [@spackbot] updating style on behalf of AlexanderRichert-NOAA

* Update var/spack/repos/builtin/packages/awscli-v2/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-24 09:25:59 -06:00
Alex Richert
6680c6b72e
libjpeg-turbo: add v2.1.5, update recipe (#37963)
Co-authored-by: Alec Scott <hi@alecbcs.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-02-23 19:23:52 -07:00
Chris Marsh
74b6bf14b8
netcdf-cxx4: convert to CMake-based build (#42766)
The CMake-based build is anticipated to work in all cases where the
Autotools-based build did, and to address all prior issues with less
maintenance of the package. In detail:

* Fixes #42735 (CMake's find_package helps with linking to proper
  netcdf-c)
* Replaces older Autotools-based build
* All preexisting variants are handled
* Record hdf5 as an explicit dependency (was missing before)
* Add +tests option

Co-authored-by: Chrismarsh <Chrismarsh@users.noreply.github.com>
2024-02-23 15:37:33 -08:00
Vicente Bolea
7c315fc14b
proj: apply stdint.h patch in version 8 (#42791)
* proj: apply stdint.h patch in version 8

* Update var/spack/repos/builtin/packages/proj/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-23 14:48:20 -07:00
John W. Parent
f51c9fc6c3
Windows path handling: change representation for paths with spaces (#42754)
Some builds on Windows break when encountering paths with spaces. This
reencodes some paths in Windows 8.3 filename format (when on Windows):
this serves as an equivalent identifier for the file, but in a form that
does not have spaces.

8.3 filenames are also truncated in length, which could be helpful, but
that is not the primary intended purpose of using this format.

Overall

* nmake/msbuild packages do this generally for the install prefix
* curl/perl require additional modifications (as written now, each package
  may require calls to `windows_sfn` to work when the Spack
  root/install/staging prefixes contain spaces)

Some items for follow-up:

* Spack itself does not create paths with spaces "on top" of whatever
  the user configures or where it is placed (e.g. the Spack root, the
  staging directory, etc.), so it might be possible to edit some of these
  paths once and avoid a proliferation of individual `windows_sfn`
  calls in individual packages.
* This approach may result in the insertion of 8.3-style paths into
  build artifacts (on Windows), handling this may require additional
  bookkeeping (e.g. when relocating).
2024-02-23 13:30:11 -08:00