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8146 commits

Author SHA1 Message Date
Adam J. Stewart
10d5008ef5 Restrict pism to proj@:4 (#11754) 
* Restrict pism to proj@:5

* PROJ.5 is not yet supported either :(
 2019-06-17 18:35:03 -04:00
Paul
93e1336de8 Added newer GoLang versions (#11756) 2019-06-17 17:23:09 -05:00
Adam J. Stewart
a558de117a Restrict ibmisc to proj@:4 (#11753) 
* Restrict ibmisc to proj@:5

* Restrict ibmisc to proj@:4
 2019-06-17 18:02:09 -04:00
Dan Lipsa
cdf4ba81e5 Remove version from py-mpi4py. (#11587) 2019-06-17 10:59:34 -04:00
Valentin Clement (バレンタイン クレメン)
f4d8b1ee60 Add version 1.2.2 and 1.2.3 to the package (#11748) 2019-06-17 16:03:26 +02:00
Dan Lipsa
83c7959580 Fix condition to enable mpi4py. (#11707) 
* Fix condition to enable mpi4py.

* flake8

* Catalyst as paraview for mpi4py.

* Catalyst needs numpy and mpi4py.

* Remove leftover enable python.
 2019-06-17 09:30:29 -04:00
Axel Huebl
b57ba6289c
openPMD-api: pybind11>=2.3.0 (#11744) 
Update the dependency on pybind11 to the latest version
(constexpr signature support for all C++11 compilers + fixes).
 2019-06-16 17:47:55 +02:00
Todd Gamblin
ce3a3507a4
cowsay: new package (#11743) 
- A program that generates ASCII pictures of a cow with a message.

- This is used by the ISC19 Singularity tutorial, so we should probably
  have it in Spack.
 2019-06-16 17:29:25 +02:00
Adam J. Stewart
3192318f36 Add py-geopandas 0.5.0 (#11737) 2019-06-16 08:57:13 +02:00
Adam J. Stewart
4965e9be53 Add libtiff 4.0.10 (#11732) 2019-06-16 08:52:16 +02:00
Adam J. Stewart
830964c2fb Add nasm 2.14.02 (#11729) 2019-06-16 08:50:05 +02:00
Adam J. Stewart
e259932a1e Add openjpeg 2.3.1 (#11728) 2019-06-16 08:49:36 +02:00
Adam J. Stewart
76490dcdbc Add py-cligj 0.5.0 (#11727) 2019-06-16 08:48:42 +02:00
Adam J. Stewart
69a746e941 Add py-numpy 1.16.4 (#11726) 2019-06-16 08:47:38 +02:00
Adam J. Stewart
7bb44f4620 Add libjpeg-turbo 2.0.2 (#11725) 2019-06-16 08:47:14 +02:00
Adam J. Stewart
92ab46b9ed Update URL for older version of jackcess (#11724) 2019-06-16 08:46:13 +02:00
Adam J. Stewart
53a4ea43c8 Add HDF 4.2.14 (#11723) 2019-06-16 08:45:23 +02:00
Adam J. Stewart
ffb7e83e65 Add new package py-boto3 (#11722) 2019-06-16 08:44:41 +02:00
Adam J. Stewart
0de9d15a49 Add new package py-s3transfer (#11721) 2019-06-16 08:43:41 +02:00
Adam J. Stewart
9a400d13a9 Add new package py-botocore (#11720) 2019-06-16 08:43:06 +02:00
Adam J. Stewart
2a15ab42fe Add new package py-jmespath (#11719) 2019-06-16 08:42:35 +02:00
Adam J. Stewart
07a90b214b Add new package py-freezegun (#11718) 2019-06-16 08:41:27 +02:00
Adam J. Stewart
639cb17322 Rename py-dateutil -> py-python-dateutil (#11717) 2019-06-16 08:40:56 +02:00
Adam J. Stewart
954a36c499 Add py-aenum package (#11716) 2019-06-16 08:39:54 +02:00
Kevin Manalo
91ef079511 intel: add version 19.0.4 (#11741) 2019-06-15 23:19:58 -05:00
Adam J. Stewart
3bad45fedf
Updates to poppler to get pdf2svg working (#11681) 2019-06-15 17:32:39 -05:00
Glenn Johnson
6592b4d46d Fix latest HPL for MKL use (#11712) 
The 2.3 version of HPL needs LDFLAGS set for use of MKL libraries.
 2019-06-15 15:46:59 -05:00
Axel Huebl
bccfb622e5 pybind11: v2.3.0 (#11713) 
Add the latest 2.3.0 release and me as package maintainer.
 2019-06-15 10:30:04 -05:00
brietzke
ef55319a9c new package: mutationpp (#11705) 
* new package: mutationpp

* Update package.py

* flake8: correct package.py for flake8-python-style

* Update package.py

* modifications as requested by reviewer for #11705
 2019-06-15 10:29:36 -05:00
Gabriel Rockefeller
537fa81c5d r3d: add version 2019-04-24 (#11710) 2019-06-15 14:27:03 +02:00
Justin S
9d6f37dc15 montage: new package at 6.0 (#11696) 2019-06-14 16:40:50 -05:00
Matthias Diener
f3eab78b80 scons: add version 3.0.5 (#11709) 2019-06-14 16:39:58 -05:00
Satish Balay
030f0951d4
dtk@develop now requires 'submodules=True' flag (#11694) 2019-06-14 11:04:48 -05:00
Justin M Wozniak
8afae13369 swift-t: New release packages for 1.4.3 (#11684) 2019-06-14 09:49:51 -05:00
Jordan Ogas
e275ddc169 add charliecloud-0.9.10 (#11471) 
* add charliecloud-0.9.10; remove obsolete version

* revert older version changes; add version function

* fix space issue

* remove url declaration

* revert url removal

* remove self reference

* fix url; removed preferred tag; use newer package url
 2019-06-13 16:50:55 -05:00
Mark W. Krentel
aca1bfdb6a intel-xed and hpcviewer: adapt to new resource placement (#11676) 
Change 'destination' to 'placement' in the use of resource() for
intel-xed and hpcviewer.  Recent commits (1842873f and eb584d89)
changed the directory path for a resource and thus broke the build
for these packages.
 2019-06-13 09:53:30 +02:00
marvinbernhardt
4f2144a68e added jpeg,png,ffmpeg variants to lammps (#10404) 2019-06-12 21:02:20 -06:00
Tamara Dahlgren
16530f84be Update remaining packages to use Stage.source_path (#11662) 
#11528 updated Stage to always store a Package's source in a fixed
directory accessible via `Stage.source_path` This left behind a
number of packages which were expecting to access the source code
via `Stage.path`. This Updates those packages to use
`Stage.source_path` instead.

This also updates the name of the fixed directory: The original name
of the fixed directory was "src", so if an expanded archive created a
"src" directory, then users inspecting the directory structure could
see paths like "src/src" (which wasn't wrong but could be confusing).
Therefore this also updates the name of the fixed directory to
"spack-src".
 2019-06-12 17:07:47 -07:00
Dave
fe8297da74 warpx: only allow master branch, and fix build on darwin (#11667) 
* warpx: only allow master branch, and fix build on darwin

* warpx: Added CXXFLAGS=-std=c++11 for clang

* warpx: further clean up of openmp and c++11 flags

* warpx: Get around the problem with resources

The update uses placement instead of destination
 2019-06-12 23:57:20 +02:00
Robert Pavel
a32382e787 Fixed Flecsi Backend Dependencies (#11679) 
Fixed logic behind flecsi backends to not require legion for an mpi
build and to better support required combinations.
Also made graphviz support and tutorial building optional
 2019-06-12 15:46:14 -06:00
Sinan
6ae5f38f26 new python package/py-typesentry (#11657) 
* new python package/py-typesentry

* add proper version
 2019-06-11 14:33:43 -04:00
Dan Lipsa
667e2f20fe Add support for using python3 in new verison of VTK. (#11673) 
* Add support for python3 in new versions of VTK.
 2019-06-11 12:50:22 -04:00
psakievich
a998fa25b0 Paraview: Add motionfx Intel workaround (#11608) 
* Paraview/VTK: Fix failure on intel builds

Paraview@5.6.0 fails to build with intel compilers on certain platforms.
Error messages have been traced to the optional MotionFX lib.
(see https://discourse.paraview.org/t/error-build-5-6-0-rc1/572)
Turning off motionfx allows for succesful builds on these platforms.
 2019-06-11 08:15:41 -04:00
Daniel Topa
35b1b81129 Add latest releases for pFUnit (#11642) 
* Add latest releases for pFUnit
  - 3.2.10, 3.3.0, 3.3.1, 3.3.2, 3.3.3
  - 3.2.9 now with sha256
  - 4.0.0 is added, but commented out (build fails, see errors)

Verification builds

Darwin x86_64:
dantopa@cn100:pr-pfunit-darwin-general.spack $ spack find pfunit
==> 5 installed packages
-- linux-centos7-x86_64 / gcc@4.8.5 -----------------------------
pfunit@3.2.9  pfunit@3.2.10  pfunit@3.3.0  pfunit@3.3.1  pfunit@3.3.2  pfunit@3.3.3

Darwin Power9:
-- linux-rhel7-ppc64le / gcc@4.8.5 ------------------------------
pfunit@3.2.9  pfunit@3.2.10  pfunit@3.3.0  pfunit@3.3.1  pfunit@3.3.2  pfunit@3.3.3

Darwin ARM:
dantopa@cn805:pr-pfunit-darwin-arm.spack $ spack find pfunit
==> 5 installed packages
-- linux-rhel7-aarch64 / gcc@4.8.5 ------------------------------
pfunit@3.2.9  pfunit@3.2.10  pfunit@3.3.0  pfunit@3.3.1  pfunit@3.3.2  pfunit@3.3.3

2019-05-05

Signed-off-by: Daniel Topa <dantopa@lanl.gov>

* answer @citibeth comments

Signed-off-by: Daniel Topa <dantopa@lanl.gov>

* shortened offending comment to comply with flake8; suppressed error message on entry for v4.0.0

Signed-off-by: Daniel Topa <dantopa@lanl.gov>

* removed tailing space qt 20:55

Signed-off-by: Daniel Topa <dantopa@lanl.gov>
 2019-06-10 18:19:52 -04:00
Geoffrey Oxberry
a52ed34fa4 ninja{-fortran}: make pkgs nonvirtual (fix #11628) (#11629) 2019-06-10 12:53:30 -04:00
Dan Lipsa
c98190a6ec ParaView and Catalyst use python3. (#11485) 
Use python3 for latest paraview and catalyst versions.
 2019-06-10 12:48:49 -04:00
Chuck Atkins
0953cd3a2e
Remove gnutls dependency and disable openssl when appropriate (#11646) 2019-06-10 11:19:26 -04:00
t-karatsu
7178ee3b63 Define LDFLAGS when using fujitsu compiler (#11669) 2019-06-10 11:01:32 -04:00
Quinn
58b797632e dateutils: new package (#11623) 
* Adding the dateutils package
* Removing superfluous dependencies
 2019-06-08 13:32:57 -07:00
Omar Padron
bdf831469a
fix qt build on gcc8.3 (#11633) 
* fix qt build on gcc8.3

* source patches from upstream

* remove old code adding the same patch
 2019-06-08 13:09:16 -04:00