Commit graph

20667 commits

Author SHA1 Message Date
Howard Pritchard
098bf6a386
openmpi: add another maintainer (#22563)
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2021-03-26 09:00:11 +01:00
Massimiliano Culpo
0bed64503d
Make SingleFileScope able to repopulate the cache after clearing it (#22559)
fixes #22547

SingleFileScope was not able to repopulate its cache before this
change. This was affecting the configuration seen by environments
using clingo bootstrapped from sources, since the bootstrapping
operation involved a few cache invalidation for config files.
2021-03-26 01:16:11 -06:00
Desmond Orton
728f62ec8d
New R package memuse (#22494) 2021-03-25 18:22:09 -06:00
Brian Van Essen
a2a29f8789
zstr: new package, update lbann dependency (#22309) 2021-03-25 19:13:44 +01:00
dmageeLANL
f7a880f868
Libwhich: which for libraries. (#22461)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-03-25 17:14:03 +00:00
Andrew W Elble
feb6f85af7
openssl: new version 1.1.1k (#22545)
also deprecates <1.1.1k since they are affected by high severity issues
2021-03-25 16:45:45 +00:00
Robert Mijakovic
ae0f6d5a67
mercurial: new version (#22539)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-25 11:31:19 -05:00
Mosè Giordano
04a02f8665
libblastrampoline: Add version 3.0.3 (#22529) 2021-03-25 09:10:29 +01:00
Desmond Orton
0105a83d6f
New R package pinfsc50 (#22493) 2021-03-24 19:57:59 -05:00
a-saitoh-fj
9c91aeffa8
py-dask-glm: Added document build (#22293)
* py-dask-glm: Push again for testing with git.

* py-dask-glm: Fixed the pointed out OSS dependency setting to type=build.

* py-dask-glm: Set depends_on to type=build in the OSS to be built when building the document.

* py-dask-glm: Fix type of depends_on (py-scikit-learn)

Co-authored-by: miura <miura@fx7-pg01.cm.cluster>
2021-03-25 00:32:29 +00:00
Ethan Stam
6997991ad2
Llvm 7 intel patch (#22516)
* llvm@7 add patch for intel

* Fix invalid version specifier
2021-03-24 14:43:20 -07:00
kurtsansom
138417174b
mesa: add gcc 10.1.0 conflict (#22514) 2021-03-24 15:10:12 -06:00
Frédéric Simonis
38841ad746
Add doc for mirror of env (#22525) 2021-03-24 20:55:15 +00:00
Gregory Lee
8c3d929d23
fix issue #18853 build of gdk-pixbuf (#22517)
* fix issue #22228 build of gdk-pixbuf

* Update var/spack/repos/builtin/packages/gdk-pixbuf/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-03-24 19:36:30 +00:00
Robert Mijakovic
1803070d3d
intel-parallel-studio: new version (#22510)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-24 10:43:13 -06:00
Howard Pritchard
1f050993bc
openmpi: do not over specify hwloc version dep (#22498)
related to #22497

Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2021-03-24 09:29:26 -07:00
Robert Mijakovic
51d81af750
go: add v1.16.2 (#22506)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-24 16:00:42 +01:00
Robert Mijakovic
dbe210522c
gromacs: add v2021.1 (#22507)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-24 16:00:12 +01:00
Robert Mijakovic
fc12fb46a1
hadoop: add v3.3.0, v3.2.2 (#22508)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-24 15:59:13 +01:00
Robert Mijakovic
0722f59cb2
gdb: resolve issue with libintl_gettext (#22478)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-24 11:55:19 +01:00
Vanessasaurus
c41c7ce638
adding debugedit package. (#22458)
This package used to be a part of rpm, but now is being developed separately.
It will supposedly be moved to a sourceware branch (it is maintained by
redhat) but I do not know if this will happen soon. We need it in order
to change locations in binaries that are built in /tmp and then moved
elsewhere. I will ping @woodard who might be able to give us an estimate
if we should include this development repository or wait for it to be
moved elsewhere. Once this is merged, we will want to use the bootstrap
approach to install and use the library from spack.

Signed-off-by: vsoch <vsoch@users.noreply.github.com>
2021-03-23 22:59:34 -07:00
Desmond Orton
95ad5b882c
new package py-pyem (#22425)
* new package py-pyem

* Added patch note and removed homepage

* Style fixes

* Moved the version above deps

* Style fix on line 20
2021-03-23 21:25:57 +01:00
Sergey Kosukhin
a1aec1450b
Add stdcxx_libs for PGI and Cray compilers (#22491) 2021-03-23 14:19:03 -06:00
Rémi Lacroix
45e076dd20
Grace: new package (#22476) 2021-03-23 14:13:03 -06:00
Daniel Arndt
73311bc6cd
Allow DataTransferKit to be built with external ArborX package (#22486) 2021-03-23 20:07:14 +00:00
Robert Rosca
3d74592be2
Add older versions fo py-msgpack-numpy (#22490) 2021-03-23 14:07:10 -06:00
Massimiliano Culpo
413c422e53
bootstrap: account for platform specific configuration scopes (#22489)
This change accounts for platform specific configuration scopes,
like ~/.spack/linux, during bootstrapping. These scopes were
previously not accounted for and that was causing issues e.g.
when searching for compilers.
2021-03-23 14:29:13 -05:00
Rémi Lacroix
3d0adf3a8a
OpenFOAM-org: Fix compilation of version 2.4.0. (#22472)
Fix "isnan" errors when compiling version 2.4.0 with recent compilers.
2021-03-23 11:34:30 -07:00
Rémi Lacroix
4d02439820
OpenFOAM: Depend on CGAL 4.X. (#22474)
CGAL 5.X is currently not supported.
2021-03-23 11:33:01 -07:00
Martin Pokorny
c4b38e5102
Initial version of libsakura (#22488) 2021-03-23 18:05:41 +00:00
Rémi Lacroix
495b9bcb60
VAPOR: new package (#22477) 2021-03-23 11:01:32 -07:00
Robert Mijakovic
5bc1ac6ca1
cryptsetup: new version (#22470)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23 11:00:49 -07:00
Robert Mijakovic
9e316b30d1
intel: new version, 20.0.4 (#22484)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23 11:40:13 -06:00
Rémi Lacroix
dca23f3c37
Channelflow: Fix the package. (#22483)
A search and replace went wrong in 2264e30d99.

Thanks to @wadudmiah who reported this issue.
2021-03-23 12:04:40 -05:00
Robert Mijakovic
0c699d7494
git: new version (#22479)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23 10:58:12 -06:00
Michael Kuhn
a4e18a9544
flexiblas: add 3.0.4 (#22485) 2021-03-23 17:52:33 +01:00
Robert Mijakovic
76bfdbfb96
cuda: add v11.2.2 (#22471)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23 15:55:17 +01:00
Harmen Stoppels
8899a08263
OpenMPI: require ssh run dependency (#22115)
* Bump gdbm
* Add libedit 3.1
* Bump OpenSSH to 8.5p1
* Bump lz4
* Add openssh as a runtime dep of openmpi
2021-03-23 10:44:22 -04:00
Robert Mijakovic
6a3bef4bb0
gmake: add v4.3 (#22480)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23 12:47:21 +00:00
Robert Mijakovic
982d1afd01
cmake: new version (#22469)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-03-23 12:59:21 +01:00
Desmond Orton
6bfc0504cb
orthofinder: retrieve sources, overhaul recipes (#22423) 2021-03-23 09:27:52 +01:00
takanori-ihara
adf19379cc
fujitsu-ssl2: fix to library list and env variables (#22462) 2021-03-23 08:33:05 +01:00
Robert Cohn
f57626a7c4
Oneapi packages: update URLs, environment management, and dependencies (#22202)
* Replace URL computation in base IntelOneApiPackage class with
  defining URLs in component packages (this is expected to be
  simpler for now)
* Add component_dir property that all oneAPI component packages must
  define. This property names a directory that should exist after
  installation completes (useful for making sure the install was
  successful) and also defines the search location for the
  component's environment update script.
* Add needed dependencies for components (e.g. intel-oneapi-dnn
  requires intel-oneapi-tbb). The compilers provided by
  intel-oneapi-compilers need some components under certain
  circumstances (e.g. when enabling SYCL support) but these were
  omitted since the libraries should only be linked when a
  dependent package requests that feature
* Remove individual setup_run_environment implementations and use
  IntelOneApiPackage superclass method which sources vars.sh 
  (located in a subdirectory of component_dir)
* Add documentation for IntelOneApiPackge build system

Co-authored-by: Vasily Danilin <vasily.danilin@yandex.ru>
2021-03-22 17:35:45 -07:00
Massimiliano Culpo
138312efab
clingo-bootstrap: account for cray platform (#22460) 2021-03-22 17:57:32 -05:00
Jan Ciesko
364b359c68
Add Kokkos smoke test support (#22071)
Co-authored-by: Jan Ciesko (-EXP) <jciesko@sandia.gov>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-03-22 12:51:59 -06:00
Aurelien Bouteiller
623edc6674
Invoke ctest -j1 from spack install --test, and build_with_parsec from spack test run (#22070)
Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>
2021-03-22 12:34:03 -06:00
Harmen Stoppels
22425da038
IPython: add v7.21.0 and updated dependencies accordingly (#22448) 2021-03-22 19:22:41 +01:00
Vanessasaurus
c2a9b7aa08
rpm: add new package. (#22382)
For rpm to build with lua, we additionally need to add a lua.pc file
that the configure script can find.

Patch from : dcaf70897a/gnu/packages/patches/lua-pkgconfig.patch

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-03-22 17:47:56 +01:00
AMD Toolchain Support
2fba3e2bd3
Spack recipes for AOCL 3.0 (#22376)
Added Spack recipes for AOCL 3.0 blis, ambles, amdlibflame, amdlibm, amdscalapack, aocl-sparce.
2021-03-22 09:30:08 -07:00
Seth R. Johnson
3a33d45d6d
openssh: support spack external find (#22445) 2021-03-22 10:19:07 -06:00