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1074 commits

Author SHA1 Message Date
Matthew LeGendre
87db69478d Merge branch 'develop' into features/external-packages 
Conflicts:
	lib/spack/spack/package.py
 2016-03-09 11:09:37 -08:00
Luigi Calori
bf4d51ea0b fix error exit when doing spack patch without parameters, same as spack stage 2016-03-09 09:27:53 -08:00
Todd Gamblin
9c61843737 Fix bugs in DIYStage: fetch & context handling. 
- DIYStage needs to be a context handler
- DIYStage.fetch needs to take 2 args.
 2016-03-08 13:58:41 -08:00
Todd Gamblin
df84677d16 Make diy generate verbose build output by default. 
- added -q option to shut it up
 2016-03-08 13:57:13 -08:00
Todd Gamblin
a1be45d0e7 Fix bug with setting module-scope vars in derived package classes. 2016-03-08 13:56:44 -08:00
Todd Gamblin
a4861a3072 Minor changes/bugfixes on md5/checksum PR 2016-03-08 10:39:46 -08:00
Todd Gamblin
747855b960 Merge branch 'fixes/md5' of git://github.com/epfl-scitas/spack into epfl-scitas-fixes/md5 2016-03-08 09:12:57 -08:00
Todd Gamblin
31cebb969a Merge pull request #504 from LLNL/bugfix/github-502 
Bugfix/GitHub 502: Error: No spec file found at path
 2016-03-08 03:43:52 -08:00
Todd Gamblin
214deeda54 Merge branch 'features/noexpand' into develop 
Conflicts:
	lib/spack/llnl/util/filesystem.py
 2016-03-08 03:29:57 -08:00
Todd Gamblin
5aadb6df19 Fixes #502. Create install prefix before build, clean up do_install. 
- Fix bug introduced during merge of stage refactor.
  - install prefix was not created before build_environment.fork()
    - build_environment.fork() calls setup_dependent_environment
    - python's setup_dependent_environment can inadvertently create
      the install prefix before directory_layout expects it.

- Clean up Package.do_install:
  - simplify control flow: parent process now entirely responsible for
    creating/destroying the install prefix. cleanup is now in one place.
  - Hoisting cleanup out of the child improves nesting of try/catch in
    `real_work`.
  - `real_work` renamed to `build_process`
 2016-03-08 02:50:26 -08:00
alalazo
77ec27c730 fixed bug : similar issues in checksum and md5 as were solved in ad103dcafa 2016-03-08 11:09:41 +01:00
Todd Gamblin
96e1b2d25c Merge pull request #486 from RemoteConnectionManager/paraview_fix 
Paraview new version
 2016-03-07 02:48:12 -08:00
Todd Gamblin
4d1703fc06 Merge branch 'features/repos-doc-fix' into develop 2016-03-07 02:40:59 -08:00
Todd Gamblin
12ddf241a5 Fix code block in docs. 2016-03-07 02:39:14 -08:00
Todd Gamblin
547933e7e4 Fix bug in -Xlinker argument handling 
- also update test to match.
 2016-03-07 01:48:26 -08:00
Todd Gamblin
f2bcc6cc35 Merge branch 'eschnett/rpath-comma' of git://github.com/eschnett/spack into eschnett-eschnett/rpath-comma 2016-03-06 23:50:14 -08:00
Erik Schnetter
265ef337a8 Don't quote -rpath literal 2016-03-06 23:27:30 -05:00
Todd Gamblin
108277fb5d Fix docs that have gone stale since repos were added. 2016-03-06 19:32:00 -08:00
Todd Gamblin
ada675dea2 Merge branch 'features/sbang' into develop 
Conflicts:
	lib/spack/llnl/util/filesystem.py
 2016-03-06 19:30:19 -08:00
Todd Gamblin
1ee90a6fe7 Make spack_cc, spack_cxx, spack_f77, spack_fc available in build env. 
- Add for convenience for packages that need to refer to these.
- Added an example in the documentation.
 2016-03-06 16:57:30 -08:00
Todd Gamblin
240ada5775 Add expand=False option for URL downloads. 
- Allows skipping the expand step for downloads.
  - Fixed stage so that it knows expansion didn't fail when there is a
    no-expand URLFetchStrategy.

- Updated docs to reflect new option, and provided an example.
 2016-03-06 16:51:09 -08:00
Todd Gamblin
e515042a36 Fix stage creation bug, simplify do_install code. 2016-03-06 01:41:48 -08:00
Todd Gamblin
ad103dcafa Small refactor: add keep parameter to stage, get rid of stage.destroy call. 
- package.py uses context manager more effectively.

- Stage.__init__ has easier to understand method signature now.
  - keep can be used to override the default behavior either to keep
    the stage ALL the time or to delete the stage ALL the time.
 2016-03-05 20:00:30 -08:00
Todd Gamblin
14d48eba46 Revert c5d9ee8924 for bug fixes. 
- This reverts commit c5d9ee8924.

- merged too soon before
- reverting and fixing bugs now.

Conflicts:
	lib/spack/spack/mirror.py
	lib/spack/spack/package.py
 2016-03-05 18:40:28 -08:00
Todd Gamblin
097df180e2 Merge pull request #493 from adamjstewart/features/pgi 
Modifications to get PGI working
 2016-03-05 14:19:15 -08:00
Todd Gamblin
bfce2c7508 Fix bug in hook: ensure bin directory exists before listing. 2016-03-05 04:42:52 -08:00
Todd Gamblin
fc6aa7374a Fix #104, #54: issues with overlong shebang in deep directories. 
This does several things:

- Add `sbang`: a script to run scripts with long shebang lines.
  - Documentation for `sbang` is in `bin/sbang`.

- Add an `sbang` hook that filters the `bin` directory after install
  and modifies any scripts wtih shebangs that are too long to use
  `sbang` instead.

- `sbang` is at the top level, so it should be runnable (not much we
  can do if spack itself is too deep for shebang)
  - `sbang`, when used as the interpreter, runs the *second* shebang
    line it finds in a script.
  - shoud fix issues with too long shebang paths.
 2016-03-05 04:18:48 -08:00
becker33
6449e8b1b9 Merge pull request #492 from adamjstewart/typos/compiler 
Typo fix in compiler docstring
 2016-03-04 14:25:56 -08:00
Adam J. Stewart
5db9673904 Typo fix in compiler docstring 2016-03-04 10:51:41 -06:00
citibeth
202fbc6812 Rmoved periods. Should help use of cut'n'paste from console windows. 2016-03-03 23:40:29 -05:00
Adam J. Stewart
311d71ec86 Modifications to get PGI working 2016-03-03 16:50:51 -06:00
Todd Gamblin
c5d9ee8924 Revert "refactoring proposal : turn Stage into a context manager" 2016-03-03 14:41:20 -08:00
Luigi Calori
a531a4f5e3 help spack versions paraview to get versions without v 2016-03-03 18:00:50 +01:00
alalazo
db92699c02 test : fixed tests that were broken by import optimization 2016-03-03 11:05:36 +01:00
alalazo
7f4a69319a Merge branch 'develop' of https://github.com/LLNL/spack into refactoring/stage 
Conflicts:
	lib/spack/spack/package.py
 2016-03-03 10:19:45 +01:00
alalazo
5ef3621556 stage : minor syntax fix 2016-03-03 10:10:30 +01:00
Todd Gamblin
6701977f1a Merge pull request #475 from LLNL/features/env-and-package-provenance 
Features/env and package provenance
 2016-03-03 00:42:40 -08:00
alalazo
353d12d2e6 stage : added create function as decided in #477 comments 2016-03-03 09:18:47 +01:00
alalazo
717bcb8624 test : optimized import statements 2016-03-03 09:17:49 +01:00
Gregory Becker
4f9a309de8 made spack more conservative in compiler strategies attempted 2016-03-02 16:35:02 -08:00
Gregory Becker
487b2495a1 made spack more conservative in compiler strategies attempted 2016-03-02 16:33:10 -08:00
Mario Melara
2b48728741 Changed os subclasses CNL to change attribute to MODULES 2016-03-02 16:15:34 -08:00
Mario Melara
58efe1550d Default PATH arg 2016-03-02 16:14:42 -08:00
Gregory Becker
16d8c25b23 fixed floating 'target' 2016-03-02 16:12:32 -08:00
Gregory Becker
65d4169f00 fixed type/bug 2016-03-02 16:03:11 -08:00
Gregory Becker
ffb9574312 fixed type/bug 2016-03-02 15:59:23 -08:00
Gregory Becker
6e7b00a0f6 Made module handling much saner and safer 2016-03-02 15:54:23 -08:00
Mario Melara
b4298979fe Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch 2016-03-02 14:18:19 -08:00
Gregory Becker
676591ffc0 fixed a bug and a test bug 2016-03-02 14:17:46 -08:00
Mario Melara
975cba295b Added 'better' tests 2016-03-02 14:16:57 -08:00
Mario Melara
e46bac19fa Changed architecture to dict 2016-03-02 12:09:02 -08:00
Mario Melara
90e90f61c1 Got rid of the compiler strategy from target 2016-03-02 12:08:43 -08:00
Mario Melara
47c8e1366f Changed to_dictionary and from_dictionary methods 2016-03-02 12:08:17 -08:00
Gregory Becker
25f20b1967 bug hunting 2016-03-02 11:40:21 -08:00
Glenn Johnson
6bbadbfaac Add CPATH pointing to include directories. 2016-03-02 13:18:43 -06:00
Mario Melara
340ecf6e9a Merge branch 'features/newarch' of https://github.com/NERSC/spack into features/newarch 2016-03-02 11:07:52 -08:00
Gregory Becker
86e90bba87 another partial, narrowing in on proper arch 2016-03-02 11:05:05 -08:00
Mario Melara
81e236b2de Changed Arch to class instead of namedtuple. Now platform is automatically set upon creation of class 2016-03-02 11:04:55 -08:00
Gregory Becker
45887dec8e partial work on bug hunting 2016-03-02 10:56:46 -08:00
Mario Melara
f27f2f8e49 Fixed some indentation errors 2016-03-02 10:27:12 -08:00
Mario Melara
4d74784209 Changed add_architecture_from_string and split the work done into two methods add_target_from_string and add_operating_system_from_string 2016-03-02 10:27:00 -08:00
Mario Melara
527bb7abfe Changed _cmp_key 2016-03-02 10:26:09 -08:00
Todd Gamblin
9f6ebd7c6e Merge pull request #465 from citibeth/efischer/160229-RemoteRootBugfix 
Bug Fix: When Spack create roots around for other versions, it someti…
 2016-03-02 10:24:17 -08:00
Gregory Becker
615ea969f8 made arch instantiate as a tuple 2016-03-02 10:14:50 -08:00
Gregory Becker
4601c36f57 cleaned up concretize architecture 2016-03-02 09:55:44 -08:00
alalazo
21cd05aad5 package : updated doc 2016-03-02 17:28:21 +01:00
alalazo
ca41909ec5 package : removed do_clean() 2016-03-02 17:19:27 +01:00
alalazo
4d63544fe9 remove_link_tree : moved to llnl.util.filesystem 2016-03-02 16:55:57 +01:00
alalazo
901e4851b9 _cleanup_dead_links : factored method into a function and put it in llnl.filesystem 2016-03-02 16:19:32 +01:00
alalazo
9001b9ed3c package : minor syntax fixes 
mirror : extracted add_single_spec from create
 2016-03-02 15:56:09 +01:00
alalazo
d649b715ed stage : updated functions doc 
_cleanup_dead_links : fixed minor bug
 2016-03-02 13:16:04 +01:00
alalazo
65b2a24f7c stage : removed _setup method 2016-03-02 13:03:40 +01:00
alalazo
726b350689 test : fixed failing unit tests 2016-03-02 12:52:38 +01:00
Todd Gamblin
a0c6519de9 Fixes #476: create was broken for FTP URLs. 2016-03-02 01:47:54 -08:00
Todd Gamblin
52081c46d6 Fixes #469: Store package.py files in the .spack directory. 
- Adds packages in spack repos inside the .spack directory, so that
  packages can be rebuilt automatically later.
 2016-03-02 00:09:24 -08:00
Todd Gamblin
21d125c914 Fixes #175: Dump environment provenance as well as build log. 2016-03-02 00:08:36 -08:00
Todd Gamblin
be306d09e9 Move repo creation code into repository.py 2016-03-02 00:04:46 -08:00
Todd Gamblin
c488f7c4d8 Fix bug in install permission setting. 2016-03-01 23:57:34 -08:00
Adam J. Stewart
a9f0b98d4d Typo fix 2016-03-01 15:53:53 -06:00
Elizabeth F
a339ac0a72 Bug Fix: When Spack create roots around for other versions, it sometimes finds files it thinks are tarballs, but are not. Previously, it would crash if any such files are found. This change allows it to simply skip them and move on, processing the rest of the files it finds correctly. 2016-02-29 23:04:11 -05:00
Ian Lee
67f327f805 Updated links to use new llnl.gov address 2016-02-28 19:47:19 -08:00
Mario Melara
b591d2b501 Changed operating_system path 2016-02-25 18:49:52 -08:00
Mario Melara
ccd4a79b39 changed architecture.target to architecture.platform_os, so that compiler_for_spec uses operating system strategy 2016-02-25 18:49:27 -08:00
Mario Melara
eb96f38298 Got rid of debug comment 2016-02-25 18:48:25 -08:00
Mario Melara
f0149faf88 Added doc strings to functions in architecture.py 2016-02-25 18:48:00 -08:00
Mario Melara
ac55ce989d Changed compiler finding strategy to come from operating system instead of target 2016-02-25 18:47:41 -08:00
becker33
7176e5ef07 Merge pull request #299 from epfl-scitas/enhancement/os_detection 
enhancement proposal : boolean support for when=<arg>
 2016-02-25 13:38:03 -08:00
Mario Melara
5989e3f65d Changed from_dict to arch_from_dict method 2016-02-25 11:53:02 -08:00
Mario Melara
5e4d3e7b82 Changed naming convention of operating_system, makes it easier to create instance from dictionary just using name without the version attached. Object will stil display as name+version 2016-02-25 11:48:43 -08:00
Mario Melara
550df4cdd6 Some cleaning up. Finally got arch_from_dict working successfully. 2016-02-25 11:47:27 -08:00
Mario Melara
9ac2556285 Deleted old operating_system (without the s) file 2016-02-25 10:41:28 -08:00
Mario Melara
b43a5498a1 Changed import path to operating_systems 2016-02-25 10:36:47 -08:00
Mario Melara
f161609929 Renamed operating_system to operating_systems 2016-02-25 10:36:12 -08:00
Mario Melara
34be473b7c Deleted files 2016-02-25 10:35:58 -08:00
Mario Melara
863a5bc4fa Fix for 'Parent module spack.operating_systems not found while handling absolute import' 2016-02-25 10:34:55 -08:00
Mario Melara
8d1c06d141 Changed to dict method. Didn't realize this was being assigned to a dictionary already so got rid of d['architecture'] 2016-02-24 15:38:33 -08:00
Mario Melara
bd7c189c12 Added more comments 2016-02-24 15:37:50 -08:00
Mario Melara
5c3c6e7f06 Got rid of print statements 2016-02-24 15:34:32 -08:00
Mario Melara
234681306c Changed to appropriate class names for operating system 2016-02-24 15:32:23 -08:00
Mario Melara
2de81cfc62 Changed name to appropriate camelcase 2016-02-24 15:31:21 -08:00