Commit graph

17528 commits

Author SHA1 Message Date
dunatotatos
cdeecf2507
GenomeWorks: added new package at v0.5.3 (#19263) 2020-10-16 10:17:32 +02:00
Harsh Bhatia
878e89ecea
faiss: added new package at v1.6.3 (#17290)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-10-16 09:47:22 +02:00
Greg Becker
7a6268593c
Environments: specify packages for developer builds (#15256)
* allow environments to specify dev-build packages

* spack develop and spack undevelop commands

* never pull dev-build packges from bincache

* reinstall dev_specs when code has changed; reinstall dependents too

* preserve dev info paths and versions in concretization as special variant

* move install overwrite transaction into installer

* move dev-build argument handling to package.do_install

now that specs are dev-aware, package.do_install can add
necessary args (keep_stage=True, use_cache=False) to dev
builds. This simplifies driving logic in cmd and env._install

* allow 'any' as wildcard for variants

* spec: allow anonymous dependencies

raise an error when constraining by or normalizing an anonymous dep
refactor concretize_develop to remove dev_build variant
refactor tests to check for ^dev_path=any instead of +dev_build

* fix variant class hierarchy
2020-10-15 17:23:16 -07:00
Omar Padron
2ed39dfd8e
make opengl and spectrum-mpi set has_code = False (#19133)
* make opengl and spectrum-mpi set has_code = False
2020-10-15 15:13:21 -04:00
Sreenivasa Murthy Kolam
0b6f995187
Update migraphx for rocm 3.8 (#19300)
* update to migraphx for rocm_3.7.0 and rocm_3.8.0

* fix flake8 errors

* address review comments

* review changes

* removed the msgpack,mentioned twice
2020-10-15 10:41:48 -05:00
darmac
9240058c0d
Add new package: bdii (#18732)
* Add new package: bdii

* bdii: refine dependents
2020-10-15 16:47:06 +02:00
darmac
a9d25ea01b
py-acme-tiny: added new package at v4.0.4 (#18808) 2020-10-15 16:14:13 +02:00
Jean-Paul Pelteret
c1f2d6a73b
GiNaC: added new package at v1.7.11, updated cln (#15730) 2020-10-15 16:03:12 +02:00
Tom Payerle
d034d622c0
papi: restrict +sde to @6.0.0: (#19290)
Software defined events (SDE) appear to have been introduced only in
@6.0.0 (see e.g. http://icl.utk.edu/papi/software/view.html?id=275)
See #19289
2020-10-15 15:44:10 +02:00
Tom Payerle
9a554769a3
pexsi: add openmp flags to fortran flags if dependencies use OpenMP (#19274)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-15 15:41:58 +02:00
Cody Balos
a9dfa89c89
xbraid: added v2.3.0 and v3.0.0 (#19280) 2020-10-15 15:38:05 +02:00
Adam J. Stewart
d1423e21fb
CMake: added v3.18.3 and v3.18.4 (#19302) 2020-10-15 15:28:09 +02:00
manifest
4b9bdea26b
blasr-libcpp: improved setup_run_environment (#18038)
Added non standard paths to LD_LIBRARY_PATH
2020-10-15 15:26:39 +02:00
Thomas Gruber
f45e8ac70b
LIKWID: added v5.0.2, new depends_on clauses and a patch for Lua (#19164) 2020-10-15 15:20:04 +02:00
G-Ragghianti
1bf87447ad
Blaspp: added v2020.10.0, v2020.09.0, reworked recipe (#19311) 2020-10-15 14:58:31 +02:00
Hadrien G
298e18dbf3
acts: added v1.02.0 (#19305) 2020-10-15 14:13:55 +02:00
Axel Huebl
d1bfc426b0
Py-Pillow: added v8.0.0 (#19320) 2020-10-15 14:13:04 +02:00
Erik Schnetter
e4c1cb380b
amrex: Add CUDA variant (#19306)
* amrex: Add CUDA variant

* amrex: require at least cuda 9
2020-10-14 21:24:20 -05:00
Jean-Paul Pelteret
50c7bc8cfd
deal.II: Fix broken include and library path concatenation (#19315) 2020-10-14 21:23:55 -05:00
Nichols A. Romero
71d2ce7403
Removing f18 package. (#19307) 2020-10-14 13:44:22 -05:00
Tomoki, Karatsu
72f431b67b
autotools.py: fix the list of objects to be removed from libtool (Fujitsu). (#19303) 2020-10-14 19:01:49 +02:00
vvolkl
a9bc5f7751
[delphes] new version, new env var (#19304) 2020-10-14 11:55:44 -05:00
Tomoki, Karatsu
48b14c4ac6
uqtk: Add version and fixes for Fujitsu compiler. (#19288)
* uqtk: Add version and fixes for Fujitsu compiler.

* Fixed order of versions.

* Add condition to execute function.
2020-10-14 11:44:27 -05:00
Nichols A. Romero
2651fab8d1
Flang NVidia offload fix (#18965)
* Make release_90 preferred version.

* Be more explicity about CUDA dependencies.

* Remove duplicate CUDA dependency in Flang package and introduce nvptx variant.

* Fix nvptx variant message.
2020-10-14 11:35:25 -05:00
Chuck Atkins
383b5b70cc
adios2: Remove rogue zmq dependency for ssc engine (#19293) 2020-10-14 00:47:15 -07:00
Edoardo Aprà
c60cbab215
new release 7.0.2 (#19297) 2020-10-13 23:06:21 -05:00
Justin S
721efc62d1
busco: add 4.1.3 (#19296) 2020-10-13 23:05:43 -05:00
David M. Rogers
beeab6e1b9
Make DEAL_II_MPI_WITH_CUDA_SUPPORT conditional on mpi package option. (#19279) 2020-10-13 13:23:04 -05:00
hhoeflin
74a30bc624
Update neovim build and libvterm (#19015)
* Fixed wrong link to version 0.0.0 and add hash for version 0.1.4

* Fix failing build for neovim@master and neovim@stable and add hash for version 0.4.0

* Fix flake8 issues

* Removed unnecessary newline

* Depedency conditions restriction to neovim >= 0.2.0 as previous versions fail to compile

* Removed build dependency on git

* Removed master from all conditions
2020-10-13 13:18:08 -05:00
Massimiliano Culpo
b84812256d
autotools: add attribute to delete libtool archives .la files (#18850)
* autotools: add attribute to delete libtool archives .la files

According to Autotools Mythbuster (https://autotools.io/libtool/lafiles.html)
libtool archive files are mostly vestigial, but they might create issues
when relocating binary packages as shown in #18694.

For GCC specifically, most distributions remove these files with
explicit commands:

https://git.stg.centos.org/rpms/gcc/blob/master/f/gcc.spec#_1303

Considered all of that, this commit adds an easy way for each
AutotoolsPackage to remove every .la file that has been installed.
The default, for the time being, is to maintain them - to be consistent
with what Spack was doing previously.

* autotools: delete libtool archive files by default

Following review this commit changes the default for
libtool archive files deletion and adds test to verify
the behavior.
2020-10-13 09:15:48 -07:00
vvolkl
c40de7c895
[acts] fix boost dependency (#19286)
@HadrienG2  the dependency is definitely there in all versions, but I did not check if the variants need to be adapted for the newer variants of acts
2020-10-13 10:09:14 -05:00
Toyohisa Kameyama
edfbfc8962
ppopen-math-vis: change download site to github. (#19285) 2020-10-13 10:08:21 -05:00
darmac
e65bb455eb
talloc: update version and dependencies (#18817) 2020-10-13 09:58:41 -05:00
darmac
4402506527
Add new package: py-rbtools (#18963)
* Add new package: py-rbtools

* Update var/spack/repos/builtin/packages/py-rbtools/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-rbtools/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-rbtools/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-rbtools/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-13 09:57:50 -05:00
darmac
8e1e6585c4
Add new package: dnstracer (#18933)
* Add new package: dnstracer

* refine package class
2020-10-13 09:55:55 -05:00
darmac
97be7e7dd3
Add new package: libopts (#18836)
* Add new package: libopts

* fix flake8 error
2020-10-13 09:55:09 -05:00
darmac
d302d546a4
Add new package: py-eg (#18885)
* Add new package: py-eg

* refine dependency
2020-10-13 09:54:35 -05:00
darmac
3834bdfc27
Add new package: symlinks (#18925)
* Add new package: symlinks

* refine edit()
2020-10-13 09:54:06 -05:00
darmac
3b5cdf2f68
Add new package: xfsprogs (#18829)
* Add new package: xfsprogs

* remove lib64 path
2020-10-13 09:52:33 -05:00
Chuck Atkins
6084529eff
paraview: Fix external dependencies for various versions (#19236) 2020-10-13 09:51:23 -05:00
darmac
08e30a21b0
py-adb-enhanced: new package at v2.5.4 (#19010) 2020-10-13 16:14:31 +02:00
darmac
5bddc652c5
Add new package: byteman (#18736) 2020-10-13 14:19:47 +02:00
Toyohisa Kameyama
9f6086e5c8
ppopen-math-mp: change download site to github. (#19284) 2020-10-13 10:31:21 +02:00
Adam J. Stewart
021cad1521
zip: add patches (#18994)
* zip: add patches

* Add .patch suffix

* Simplify build targets
2020-10-13 09:47:25 +02:00
Ganesh Kumar
cfd69da839
mivisionx: added package at v3.8.0 (#19042) 2020-10-13 09:30:53 +02:00
Toyohisa Kameyama
ae5c0054b3
ppopen-at: change download site to github (#19282) 2020-10-13 08:36:03 +02:00
Pieter Ghysels
cb9e0d5297
STRUMPACK: added v5.0.0 (#19283) 2020-10-13 08:21:59 +02:00
Adam J. Stewart
cb4e30b477
Python: add both lib and lib64 to PYTHONPATH (#18523) 2020-10-12 17:59:20 -07:00
Tomoki, Karatsu
82a224b0da
octave: Specify fortran calling-convention for Fujitsu compiler. (#19218) 2020-10-12 16:53:37 -05:00
Michael Kuhn
a062517d3d
gcc: Restrict permitted cuda versions (#19267)
gcc seems to use sm_30, which has been dropped in cuda@11.
2020-10-12 14:15:51 -05:00