Commit graph

29822 commits

Author SHA1 Message Date
Annop Wongwathanarat
68372a4dfe
hpcg: add arm compiler (#35710) 2023-03-01 11:46:12 +01:00
Bill Williams
54500a5fca
scorep: more precise dependencies for v7/v8 (#35712) 2023-03-01 11:45:07 +01:00
Adam J. Stewart
146464e063
Docs: fix link to PythonPackage docs (#35725) 2023-03-01 11:14:05 +01:00
Massimiliano Culpo
07e251c887
Remove handling of deprecated target names (graviton) (#35537)
* Update target names for Gitlab pipelines

* Remove handling of deprecated names for graviton
2023-03-01 11:03:12 +01:00
Mosè Giordano
f9f51cb930
Add new versions of Julia dependencies (#35622) 2023-03-01 01:52:28 -08:00
nicolas le goff
ad3c22fae9
gts: add missing pkgconfig dependency (#35657) 2023-03-01 10:49:09 +01:00
AMD Toolchain Support
bedcc5449a
quantum-espresso: fix building with aocc (#35612)
Co-authored-by: Tooley, Phil <phil.tooley@amd.com>
2023-03-01 10:47:42 +01:00
Henning Glawe
a1a54fa8b7
nfft: add v3.2.4 (#35757) 2023-03-01 01:42:23 -08:00
Edward Hartnett
2a97bcbd5a
bacio: add v2.6.0, including handling of shared library builds (#35490) 2023-03-01 10:29:12 +01:00
Mark W. Krentel
99fb4c4a47
hpctoolkit: add version 2023.03.01, add python variant (#35662)
1. add version 2023.03.01
 2. add variant 'python' that supports unwinding python source
 3. clean up some things with the cray variant
 4. require the latest libmonitor
 5. fix sha256 checksum for url patch
 6. delete rocm 5.3 from older versions
2023-03-01 09:44:32 +01:00
Brian Vanderwende
5b52685216
NCO: add v5.1.4 and v5.1.0 (#35753) 2023-03-01 09:27:25 +01:00
Alex Richert
53a924c20f
Fix bufr package typo (libufr->libbufr) (#35740) 2023-02-28 15:56:30 -08:00
Annop Wongwathanarat
09ad541e98
armcomputelibrary: add version 23.02 (#35723) 2023-02-28 23:51:05 +01:00
M. Eric Irrgang
b109e16fba
Back-port a patch for filesystem logic in gmx executable. (#35672)
* Backport a patch for relocatable `gmx` executable.

* spack style fixes
2023-02-28 14:18:00 -07:00
Mark W. Krentel
043a80ff9e
hpcviewer: add version 2023.02 (#35648) 2023-02-28 11:13:30 -08:00
Matthieu Dorier
b7f7af1713
c-raft: add new package (#35735)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-02-28 11:16:02 -07:00
Rémi Lacroix
e5bd319c19
git-lfs: Add version 3.3.0 (#35671) 2023-02-27 23:58:56 -05:00
Tim Haines
90ad65a6e7
Dyninst: add version 12.3.0 (#35630) 2023-02-27 16:13:47 -08:00
Luke Diorio-Toth
779e80b7c1
Package/py pysam macos (#33851)
* cleaned up style, linked to external htslib

* removed htslib/bcfrools/samtools deps, use bundled libs instead

the pysam package includes the necessary libs to link to, so it wasn't even using linked libs when building

* fixed style

* revert to using external htslib

currently uses bundled samtools and bcftools, and there is no way to use external versions for those dependencies

* added libs property to htslibs package

added support for lib64

* added htslib name
2023-02-27 16:25:21 -06:00
Annop Wongwathanarat
502e216ee2
onednn: add variant to use Arm Compute Library on aarch64 (#35643)
* onednn: add variant to use Arm Compute Library on aarch64

* Update cmake version

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Shorten macro definition

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update cpu/gpu_runtime variants

* Update acl variant when 1.7+

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* [@spackbot] updating style on behalf of annop-w

* Add dependencies for new runtimes

* Fix dependency package name to oneapi-level-zero

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-02-27 13:58:03 -06:00
Wouter Deconinck
d6ff426d48
py-awkward: new version 1.10.*, 2.0.* (#35549)
* py-awkward: new version 1.10.*, 2.0.*

Lots of changes in 2.0.*, see https://github.com/scikit-hep/awkward/releases. This will need some extra testing.

* py-awkward: hatchling

* Update var/spack/repos/builtin/packages/py-awkward/package.py

* Update var/spack/repos/builtin/packages/py-awkward/package.py

* py-scikit-build-core: new and improved py-scikit-build

* py-awkward-cpp: new package

* py-awkward: add depends_on py-awkward-cpp

* py-awkward: depends_on py-packaging

* py-awkward-cpp: new versions pinned by py-awkward

* py-scikit-build-core: additional depends_on

* py-awkward: branch master deprecated

* py-pytest-subprocess: new package

* py-pytest: new version 7.2.1

* py-scikit-build-core: add tests dependencies

* [@spackbot] updating style on behalf of wdconinc

* py-scikit-build-core: two more test dependencies

* py-pytest: depends_on py-exceptiongroup

* py-awkward: add pytest support

* py-pytest: suggestions from review

* py-scikit-build-core: suggestions from review

* Update var/spack/repos/builtin/packages/py-awkward-cpp/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-awkward: depends_on pyyaml when @:1, order old deps last

* [@spackbot] updating style on behalf of wdconinc

* py-awkward: move some opt deps to test, order test deps

* py-awkward: remove test dependencies

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-02-27 13:51:13 -06:00
Michael Kuhn
c4311a250a
pango: add 1.50.13 (#35709) 2023-02-27 09:38:17 -08:00
dlkuehn
ceaa304f5f
osi: add version 0.108.7 (#35689)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-02-27 09:10:01 -07:00
dlkuehn
038efa4173
clp: add version 1.17.7 (#35688)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-02-27 07:23:00 -08:00
Harmen Stoppels
773fd5ad84
hpctoolkit: fix broken patches (#35711)
The patches don't have a stable checksum.
2023-02-27 10:50:48 +01:00
Seth R. Johnson
9b46e92e13
Celeritas: new versions 0.2.1 and 0.1.5 (#35704)
* celeritas: new versions 0.1.5 and 0.2.1

* celeritas: deprecate old versions
2023-02-27 09:36:28 +00:00
Howard Pritchard
f004311611
OpenMPI: add the 4.1.5 release (#35677)
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2023-02-27 00:57:36 -08:00
Glenn Johnson
a4b949492b
r-twosamplemr: add new package and dependencies (#35683) 2023-02-27 07:38:27 +01:00
Larry Knox
6ab792fb03
hdf5-vol-cache: add v1.1 (#35685) 2023-02-27 07:35:30 +01:00
Alex Richert
313c7386c4
go: set GOMAXPROCS to limit number of build processes (#35703) 2023-02-27 07:26:50 +01:00
Adam J. Stewart
b0b4a05d44
py-nbqa: add new package (#35707) 2023-02-27 07:22:48 +01:00
Alberto Invernizzi
4e13b5374f
fix dump problem (#35673)
if dump file existed it was not truncating the file, resulting in
a file with unaltered filesize, with the new content at the beginning,
"padded" with the tail of the old content, since the new content was
not enough to overwrite it.
2023-02-24 21:32:33 -08:00
Vinícius
07897900eb
ompss-2 dependencies (#35642) 2023-02-24 21:22:17 -08:00
Axel Huebl
d286146c64
WarpX 23.02 (#35633)
Update `warpx` & `py-warpx` to the latest release.
2023-02-23 17:09:28 -08:00
Todd Gamblin
6b27aebeb4
colify.py: get rid of **kwargs (#35641)
`colify` is an old module in Spack that still uses `**kwargs` liberally. 

We should be more explicit. Doing this eliminates the need for many 
checks (can't pass the wrong arg if it isn't allowed) and makes the 
function documentation more clear.
2023-02-23 11:18:54 -08:00
Mosè Giordano
5c7cccd052
p7zip: Add new versions from fork (#35627) 2023-02-23 13:10:28 +01:00
Rémi Lacroix
26c314f04f
htop: Add version 3.2.2 (#35621) 2023-02-23 03:22:18 -08:00
Rémi Lacroix
9982d76bb1
ncdu: Add version 1.18.1 (#35620) 2023-02-23 03:21:56 -08:00
Harmen Stoppels
3d41b71664
buildcache push: ensure bool arguments for include_* (#35632)
Fixes a bug introduced in 44ed0de8c0
where the push method of binary_distribution now takes named args
include_root and include_depedencies, to avoid the **kwarg hole.

But the call site wasn't update and we passed a dict of keys/values instead
of arguments, which resulted in a call like this:

```
push(include_root={"include_root": True, "include_dependencies": False})
```

This commit fixes that, and adds a test to see if we push the correct packages.
2023-02-23 01:44:47 +01:00
Wouter Deconinck
e27d3c4f75
collier: new versions 1.2.6, 1.2.7 (#35580)
Additional functionality, per https://collier.hepforge.org/releasehist.html. No mention of build changes.
2023-02-22 13:18:11 -08:00
Adam J. Stewart
5545fd34c0
py-mpi4jax: add new package (#35551)
* py-mpi4jax: add new package
* [@spackbot] updating style on behalf of adamjstewart

---------

Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-02-22 13:12:35 -08:00
luker
6ebf9f65c0
Add CCE support to hipfort (#35609)
* Add CCE support to hipfort
* Update package.py
2023-02-22 10:59:54 -08:00
Harmen Stoppels
3be9af8c13
copy_files_to_artifacts: error -> warning (#35613)
This error shows up a lot, typically it's harmless because an error
happened before the source build even started, in which case we don't
have build logs to copy. So, warn instead of error, cause it distracts
from the actual CI error.
2023-02-22 11:53:42 +00:00
Harmen Stoppels
6e477d547d
add cdash arg to source build only (#35565) 2023-02-22 11:08:32 +01:00
Harmen Stoppels
9d6630e245
spack build-env: error when deps are not installed (#35533)
Currently we attempt to setup the build environment even when
dependencies are not installed, which typically results in error while
searching for libraries or executables in a dependency's prefix.

With this change, we get a more user friendly error:

```
$ spack build-env perl
==> Error: Not all dependencies of perl are installed, cannot setup build environment:
 -   qpj6dw5  perl@5.36.0%apple-clang@14.0.0+cpanm+open+shared+threads build_system=generic arch=darwin-ventura-m1
 -   jq2plbe      ^berkeley-db@18.1.40%apple-clang@14.0.0+cxx~docs+stl build_system=autotools patches=26090f4,b231fcc arch=darwin-ventura-m1
...
$ echo $?
1
```
2023-02-22 10:35:44 +01:00
psakievich
b8d15e816b
Allow users to specify root env dir (#32836)
* Allow users to specify root env dir

Environments managed by spack have some advantages over anonymous Environments
but they are tucked away inside spack's directory tree. This PR gives
users the ability to specify where the environments should live.

See #32823

This is also taken as an opportunity to ensure that all references are to "managed environments",
rather than "named environments". Prior to this PR some references to the latter persisted.

Co-authored-by: Tom Scogland <scogland1@llnl.gov>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: Gregory Becker <becker33@llnl.gov>
2023-02-22 00:37:14 +00:00
Cameron Rutherford
0a233ce83a
ExaGO 1.5.1 release (#35595)
* Update exago w/ 1.5.1 and small updates to hiop.
* Fix styling.
* Add RAJA back to ExaGO package.
* Update RAJA requirement for ExaGO and HiOp.
* Update last RAJA requirement in HiOp.
2023-02-21 14:56:59 -08:00
G-Ragghianti
27ee08f5bb
Package slate: Improved MPI launcher search for smoke tests (#35448)
* Improved MPI launcher search for smoke tests
* Improving mpi launcher search
* Removing redundant logic
2023-02-21 13:10:01 -08:00
Massimiliano Culpo
cb4c60c709
Revert "Disable module generation by default (#35564)" (#35603)
This reverts commit 5b8917188a.
2023-02-21 21:53:07 +01:00
Wouter Deconinck
8e84dcd7ef
root: new version 6.28.00 (#35556)
* root: new version 6.28.00
  Full changelog: https://github.com/root-project/root/compare/v6-26-10...v6-28-00
  Based on the CMakeLists.txt file, no major build system changes. Upgraded requirements for cmake added.
* root: variant jemalloc deprecated
* root: rm define gsl_shared because unused
  "`gsl_shared` is unused" per https://github.com/root-project/root/pull/12203 (and has always been unused)
* [@spackbot] updating style on behalf of wdconinc

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-02-21 12:20:46 -08:00