Commit graph

18099 commits

Author SHA1 Message Date
Massimiliano Culpo
c01433f60a
spack.relocate: further coverage for ELF related functions (#16585)
* make_link_relative: added docstring

* make_elf_binaries_relative: added docstring, unit tests

* raise_if_not_relocatable: added docstring, added unit test for exceptional case

* relocate_links: removed unused arguments, added docstring and comments

Also fixed a possible bug that was issuing spurious
warning when a file was relocated successfully

* relocate_text: added docstring and comments, renamed arguments

* relocate_text_bin: added docstring and comments, renamed arguments, unit tests
2020-05-26 11:47:31 -07:00
Mark Olesen
0b96082e74 openfoam: improve handling of wmake rules, version update
- add future-proofing for wmake rules locations:
  Accept wmake/rules/{ARCH}{COMP} or wmake/rules/{ARCH}/{COMP}

- compiler option is now '-spack' instead of 'RpathOpt'
  which now seems to be a bit harsh on the eyes.
  Now have compilations such as 'linux64GccDPInt32-spack',
  which is moderately easier to read.

- add OpenFOAM 1912, patch 200506

STYLE: adjust for new flakey8 indentation rules
2020-05-26 10:55:56 -07:00
Dr. Christian Tacke
2c6406c003
grpc: allow building shared libraries (#16356) 2020-05-26 16:30:18 +02:00
darmac
d7fb8701c2
su2: new package at v7.0.3 (#16787) 2020-05-26 11:17:25 +02:00
darmac
7383d923f0
blogbench: added new package at v1.1 (#16793) 2020-05-26 11:16:43 +02:00
iarspider
45b86e2c1d
py-hypothesis: added v5.3.0 (#16804) 2020-05-26 09:42:54 +02:00
Sergey Kosukhin
ff44a6d03f
hdf: new version, variants and refactoring (#16469)
* hdf: new version, variants and refactoring.

* libc provides rpc

* Fix szip-related configure argument.

* Update dependent packages.
2020-05-25 19:20:04 -05:00
Sergey Kosukhin
15d2883abe
openmpi: get rid of implicit system dependencies (#16758)
* openmpi: get rid of implicit system dependencies

* Python 2 compatibility.

* Rename pbspro to openpbs and revert packages.yaml.

* Remove virtual package 'sendmail'.
2020-05-25 19:14:47 -05:00
iarspider
3c36a7caab
py-moreitertools: added v7.0.0 (#16802) 2020-05-25 22:18:40 +02:00
Amjad Kotobi
e90f51a802
r-spatialeco: New package (#16744) 2020-05-25 13:19:51 -05:00
Michael Kuhn
f12ae1bcd0
Fix typo for allow_sgid (#16806)
fixes #14425

The config: prefix should be included in the actual option name and
makes it impossible to change this option.
2020-05-25 18:49:35 +02:00
Stephen Herbein
c4031f0455
lua: fix compilation on Cray (#16713)
Problem: when calling `static_to_shared_library` on the `cray` arch, it
produces a non-sensical compiler command with no input files.  For
example, when installing lua@5.2.4, it produced:
'gcc -lm -ldl -o /big-long-spack-path/liblua.so.5.2.4'

Solution: do the same thing on `cray` that is done for `linux`
2020-05-25 15:18:47 +02:00
Tom Payerle
17e4a72191
netcdf-cxx4: remove erroneous variants (#16762)
fixes #16725

The dap, jna, pnetcdf, netcdf4, and ncgen4 variants added in #16047
are _not_ supported by the configure script for netcdf-cxx4 package 
(These appear to be configure args for netcdf-c package).
2020-05-25 15:15:30 +02:00
Peter Scheibel
768fa6bc53
bugfix: schema errors without line numbers (#16765)
* account for schema validation errors where the associated instance doesn't have a line number

* fix unrelated flake error (but it must be fixed because this PR touches this file and the flake rules have been updated since the last edit to this file)
2020-05-25 15:08:47 +02:00
Stephen Hudson
a3dc9cf848
libensemble: added v0.7.0 (#16773) 2020-05-25 14:35:44 +02:00
Michael Kuhn
30fb364452
py-gdbgui: added v0.13.2.0 (#16781) 2020-05-25 14:34:26 +02:00
Michael Kuhn
5a335e4985
py-pygdbmi: added v0.9.0.3 (#16778) 2020-05-25 14:33:41 +02:00
Mark W. Krentel
f370bc0fa2
libmonitor: added v2019.05.31 (#16774) 2020-05-25 14:31:16 +02:00
Michael Kuhn
9f2fc52165
py-pygments: added v2.6.1 (#16776) 2020-05-25 14:23:41 +02:00
Michael Kuhn
d0e4414bb6
libunwind: fix build with gcc@10: (#16782) 2020-05-25 14:22:51 +02:00
Michael Kuhn
232cdb85a5
python: added v3.8.3 (#16775) 2020-05-25 13:59:47 +02:00
Michael Kuhn
0c735b8f1a
meson: added v0.54.2 (#16777) 2020-05-25 13:52:13 +02:00
Michael Kuhn
8395db361c
py-flask: added v1.1.2 and v0.12.4 (#16779) 2020-05-25 13:51:08 +02:00
Amjad Kotobi
5df64769e3
r-matlab: new package at v1.0.2 (#16785) 2020-05-25 13:48:24 +02:00
darmac
6f85dc66a7
testdfsio: added new package at v0.0.1 (#16789) 2020-05-25 13:46:42 +02:00
darmac
99d9967b8b
sqoop: added new package at v1.99.7 (#16786) 2020-05-25 13:41:08 +02:00
Michael Kuhn
995714cba5
glib: added v2.64.3 (#16800) 2020-05-25 13:32:42 +02:00
darmac
04f60afc08
ffsb: added new package at v5.2.1 (#16791) 2020-05-25 13:16:55 +02:00
Tomoki, Karatsu
821c729ec0
netlib-scalapack: specify MPI's location for Fujitsu-MPI. (#16798)
Fujitsu-MPI wrapper commands aren't recognized from 'FindMPI' 
function of 'cmake'. If we are using the Fujitsu compiler and Fujitsu MPI, 
specify the MPI path information explicitly.
2020-05-25 13:12:13 +02:00
David Pape
6d913ddab7
likwid: fixed failing build on powerpc (#16797)
Fixes #16783
2020-05-25 13:10:12 +02:00
Kevin Huck
bc145b2b3f
TAU: remove ~nls constraint on binutils dependency
TAU does not require ~nls.
2020-05-22 19:40:28 -07:00
Stephen Herbein
5108fe314b flux-sched: add dependency type for flux-core 2020-05-22 19:37:47 -07:00
Stephen Herbein
a74ee4d27a flux: add dependency types for python dependency
Flux requires `build` for python and many of the python packages because
it builds python bindings.  Beyond the bindings, the Flux front-end
commands now use python too, hence the `run` type. Finally, Flux's
`pymod` module is linked against the python interpreter, so the package
requires a `link` dependency on python too.
2020-05-22 19:37:47 -07:00
Stephen Herbein
9e3470d797 flux: add latest releases and checksum
The next release 0.17.0 will also require python3.6+, pre-emptively
prepare for that release.  Also support current master branch.
2020-05-22 19:37:47 -07:00
Amjad Kotobi
eee6942c8b r-nimble: New package 2020-05-22 19:30:41 -07:00
Amjad Kotobi
9bcf4480b5 r-rferns: New package 2020-05-22 19:20:52 -07:00
Luca Heltai
55eb192234
dealii: 9.2.0 release (#16743) 2020-05-22 19:19:19 -07:00
Amjad Kotobi
3a336b328a
r-reticulate: add version; dependencies (#16747)
* Add version 1.15
* Add link dependency on r-rcpp
* Add dependency on r-rappdirs
2020-05-22 19:17:11 -07:00
Sergey Kosukhin
e18c5316bd cdo: fix url for version 1.9.8 2020-05-22 19:12:10 -07:00
Miroslav Stoyanov
86dd42ec70
tasmanian: add version 7.1 (#16769) 2020-05-22 19:10:21 -07:00
Michael Kuhn
be570aa655 zstd: Add 1.4.5 2020-05-22 19:07:29 -07:00
Adam J. Stewart
f17352f6f7
py-horovod: add 0.19.3 (#16768) 2020-05-22 19:20:25 -05:00
Seth R. Johnson
6ac8cf8126
IWYU: fix 0.14 build (#16761)
* IWYU: fix 0.14 build

The CMake patch used for 0.13 hadn't been applied to the master when
0.14 was released, and this version of IWYU requires C++14 or higher.

* Flake8
2020-05-22 15:07:59 -05:00
Seth R. Johnson
04046c15de
Mark Valgrind as conflicting with macOS > 10.13 (#16759)
```
    '/var/folders/fy/x2xtwh1n7fn0_0q2kk29xkv9vvmbqb/T/s3j/spack-stage/spack-stage-valgrind-3.15.0-mtir7ubjz7mqmjbb7bogze2qm35hl4ze/spack-src/configure' '--prefix=/ornldev/code/spack/opt/spack/clang-11.0.0-apple/valgrind/mtir7ub' '--enable-only64bit' '--build=amd64-darwin'
1 error found in build log:
     43    checking host system type... x86_64-pc-darwin
     44    checking for a supported CPU... ok (x86_64)
     45    checking for a 64-bit only build... yes
     46    checking for a 32-bit only build... no
     47    checking for a supported OS... ok (darwin)
     48    checking for the kernel version... unsupported (18.7.0)
  >> 49    configure: error: Valgrind works on Darwin 10.x, 11.x, 12.x, 13.x, 14.x, 15.x, 16.x and 17.x (Mac OS X 10.6/7/8/9/10/11 and macOS 10.12/13)
```
2020-05-22 15:07:45 -05:00
Seth R. Johnson
106a121b83
[Trilinos] Make MPI optional (#16685)
* Make MPI optional for Trilinos

* Use 'define' and 'define_from_variant' in trilinos package
2020-05-22 14:40:21 -05:00
Ethan Stam
7449bf8bab
ParaView: conflict ~opengl2 with versions 5.5 and up (#16742) 2020-05-22 10:33:19 -05:00
Rob Latham
ed037edd26
prrte uses libev data structues, not libevent (#16530)
* use libevent not libev

* Add Ralph Castain as a maintainer
2020-05-22 10:31:10 -05:00
noguchi-k
d51635e6bd
ffr: add flag to use fixed format in which the length of one line of the source code is 255 when building with Fujitsu compiler. (#16737)
* ffr: add flag to use fixed format in which the length of one line of the source code is 255 when building with Fujitsu compiler.

* ffr: changed to elif.
2020-05-22 10:28:57 -05:00
Carlos Bederián
1d936a8cc6
julia: Fix LLVM build failing with newer versions of CMake (#16738) 2020-05-22 10:24:54 -05:00
Justin S
d2d35f80d1
fraggenescan: new package at v1.31 (#16587)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-22 17:17:43 +02:00