Michael Kuhn
ec5d366bcd
likwid: Fix hash for 4.3.0 ( #6307 )
...
Prefer 4.2.1 for now because 4.3.0's hash changes regularly.
2017-11-14 16:41:05 -07:00
健美猫
d9a4e7a038
Update miniconda to 4.3.30. ( #6233 )
2017-11-14 12:11:53 -08:00
Adam J. Stewart
138e9d08c6
Add the latest version of Lmod ( #6297 )
2017-11-14 10:32:41 -08:00
koebbe
50957bd44f
py-h5py: make sure to depend on the hl variant of hdf5 ( #6304 )
2017-11-14 09:26:58 -07:00
vishalkenchan
0692029273
update trilinos checksums ( #6301 )
2017-11-14 09:22:34 -07:00
Michael Kuhn
aa27432a1d
ncl: Check for ncl binary after installation ( #6298 )
...
ncl's build system will happily continue in case of errors, which might
result in the ncl binary not being built.
2017-11-14 09:22:04 -07:00
Michael Kuhn
e31b997162
icu4c: Update to 60.1 ( #6295 )
...
Previous versions try to include xlocale.h, which fails on glibc >= 2.26.
2017-11-14 09:21:35 -07:00
Yifan Zhu
a8f9182ef3
r-forcats: created new package ( #6291 )
2017-11-14 09:21:21 -07:00
Michael Kuhn
93bca2f3a2
libbson, libmongoc: Update to 1.8.1 ( #6290 )
2017-11-14 09:21:05 -07:00
Eric
137a9e64ac
trimgalore: add version 0.4.5 ( #6288 )
2017-11-14 09:20:20 -07:00
Yifan Zhu
392e25b7e6
r-mnormt: created new package ( #6287 )
2017-11-14 09:20:06 -07:00
Yifan Zhu
05eb287ed9
r-bindr: created new package ( #6285 )
2017-11-14 09:19:49 -07:00
Yifan Zhu
c042644b53
r-glue: created new package ( #6283 )
2017-11-13 16:25:52 -07:00
Douglas Duckworth
c7d2b4dbd6
relion 2.1 - update variant defaults ( #6201 )
...
Default precision should be double for CPU. Generally users also want
to use GPUs so the +cuda variant is now also enabled by default.
2017-11-13 12:29:43 -08:00
Christoph Junghans
bde727e187
mpibash: move to autotools ( #6253 )
2017-11-13 10:48:31 -07:00
Christoph Junghans
02335fa849
ucx: initial commit ( #6265 )
2017-11-13 10:47:58 -07:00
Eric
306aca812d
ont-albacore: add version 2.1.2 ( #6278 )
2017-11-13 10:47:40 -07:00
Satish Balay
6fd92e4257
petsc: update to version 3.8.2 ( #6244 )
...
Includes pkgconfig fix [for mfem static build failure]
2017-11-11 07:16:03 -07:00
Brian Homerding
19f8940c01
Nekbone: Installing data files for example runs ( #6243 )
...
* Nekbone: Installing data files for example runs
* Typo Fix
2017-11-10 19:59:33 -07:00
Sergey Kosukhin
263126bc5d
Create symlink for 'swig' binary after installation. ( #6240 )
2017-11-10 19:50:11 -07:00
Aaron Fisher
af06ea0e74
Fixed mfem mpi build issue. ( #6254 )
...
* Fixed mfem mpi build issue.
* Fixed a non-mpi build issue and switched to the latest official MFEM release.
2017-11-10 19:49:17 -07:00
Yifan Zhu
e38f31e773
feature/r-reprex: new package ( #6257 )
2017-11-10 19:47:21 -07:00
Cyrus Harrison
b079e1dbd5
add alpine ascent ( #6224 )
...
* add ascent package and and deps
* proper use of site_packages_dir prop
* flake8
* add maitain, small updates
* flake8
* flake8
* fixs for docstrings for sphinx
2017-11-10 17:00:47 -08:00
becker33
917d021997
Add version 1.04 ( #6259 )
2017-11-10 15:52:48 -08:00
becker33
a7b817b494
elfutils: add --no-as-needed flag for library ordering issue ( #6256 )
...
* add --no-as-needed flag for library ordering issue libelf
* fix syntax error.
2017-11-10 11:42:37 -08:00
Yifan Zhu
f6ed8d856a
xclip: created new package ( #6248 )
2017-11-10 11:13:00 -07:00
Yifan Zhu
a872dc5927
r-clipr: created new package ( #6249 )
2017-11-10 11:11:45 -07:00
lingnanyuan
acc3817ffc
r-purrr: Create new package. ( #6241 )
2017-11-09 14:51:30 -07:00
lingnanyuan
65a278c927
r-covr: Create new package. ( #6239 )
2017-11-09 13:19:53 -07:00
lingnanyuan
e43e29209d
r-readxl: Create new package. ( #6238 )
2017-11-09 13:19:43 -07:00
lingnanyuan
0902f58f3d
r-cellranger: Create new package. ( #6237 )
2017-11-09 13:19:25 -07:00
lingnanyuan
5e0e3092f6
r-rematch: Create new package. ( #6236 )
2017-11-09 13:19:12 -07:00
Satish Balay
2b07379831
petsc: when hdf5 depends on zlib - petsc+hdf5 should also be configur… ( #6189 )
...
* petsc: when hdf5 depends on zlib - petsc+hdf5 should also be configured with zlib
* petsc: fix dependency [of zlib to be on hdf5 - and not on petsc]
* petsc: use the fact that hdf5/package.py has a hard dependency on zlib [so no need to check for this dependency in code]
recommended-by: @davydden
* petsc: change hdf5 dependency to 'hdf5+hl' as petsc configure is looing for -lhdf5_hl
https://github.com/spack/spack/issues/5846
2017-11-09 11:34:59 -08:00
Satish Balay
8d512ce9ae
magma: cuda updates [from xsdk-0.3.0 branch] ( #6160 )
...
- add gcc dependency per cuda versions
- Fix for cuda-9.0 as it does not support sm20
nvcc fatal : Unsupported gpu architecture 'compute_20'
2017-11-09 11:34:40 -08:00
lingnanyuan
ee867db5de
r-log4r: Create new package. ( #6133 )
2017-11-09 10:23:48 -07:00
Simone Bnà
c79a0fbbf2
mesa: fixed url for version ( #5818 )
2017-11-09 10:16:52 -07:00
Benedikt Riedel
266de67c24
ROOT needs to have a consistent version of binutils, as it is very sensitive to the version of libopcodes. You can't move the code from one system (with the same OS) as another. ( #6226 )
2017-11-09 06:49:27 -08:00
lingnanyuan
935a6b00d7
r-analysispageserver: Create new package. ( #6135 )
2017-11-09 07:23:10 -07:00
Levi Baber
74d38b3150
py-dlcpar ( #6229 )
...
* py-dlcpar: new package
* py-dlcpar: whitespace
2017-11-09 07:21:56 -07:00
baip
acf6653933
pexsi: add version 0.10.2 ( #6232 )
2017-11-09 07:21:39 -07:00
David Gardner
d9fc26b2a5
add sundials 3.1.0 ( #6230 )
2017-11-09 14:04:03 +01:00
Luigi Calori
24bb3c61de
fix perl dependent modules, #5900 ( #5937 )
...
* FIX perl dependent environmwent setup to avoid void lines in generated modules as #5900
* remove debug prints
* fix flake8
2017-11-08 22:10:50 -07:00
Alfredo Adolfo Gimenez
a754bd7eee
Package/sosflow ( #6122 )
...
* Added missing deps to libffs
* SOSflow spack package pointing to sos_flow feature/spack branch
* Using tag for spack build
* Change url to spack/spack
2017-11-08 22:07:37 -07:00
David Gardner
a656bc300a
add patch for building sundials ( #6161 )
...
* add patch for building sundials on mac
* add upper limit on the patch
2017-11-08 22:06:34 -07:00
Yifan Zhu
3159841e33
r-callr: created new package ( #6223 )
2017-11-08 21:59:21 -07:00
lingnanyuan
72bec9a7a0
r-rex: Create new package. ( #6221 )
2017-11-08 21:57:09 -07:00
Yifan Zhu
ca2ffd9299
r-rvest: created new package ( #6220 )
2017-11-08 21:56:50 -07:00
Levi Baber
ef126523f1
fastme: new package ( #6219 )
2017-11-08 21:56:32 -07:00
Yifan Zhu
edc1e6a0d8
r-selectr: created new package ( #6218 )
2017-11-08 21:56:02 -07:00
lingnanyuan
e57564e899
r-tseries: Create new package. ( #6216 )
2017-11-08 21:55:45 -07:00
sknigh
699748a2be
Added missing build dependency to json-c ( #6211 )
2017-11-08 21:55:28 -07:00
lingnanyuan
e2004076b1
r-allelicimbalance: Create new package. ( #6044 )
2017-11-08 21:52:46 -07:00
Yifan Zhu
ac7f5a1af1
r-mzr: created new package ( #6206 )
2017-11-08 19:53:00 -07:00
Yifan Zhu
cd4b19ffa8
r-msnbase: new package ( #6207 )
2017-11-08 19:52:38 -07:00
lingnanyuan
912d39908d
r-sqldf: Create new package. ( #6208 )
2017-11-08 19:52:08 -07:00
lingnanyuan
4585d6426a
r-gsubfn: Create new package. ( #6209 )
2017-11-08 19:51:51 -07:00
Yifan Zhu
b110cd0b12
r-vsn: new package ( #6210 )
...
* r-hexbin: updated md5
* r-vsn: created new package
2017-11-08 19:51:35 -07:00
lingnanyuan
7848e0d4b6
r-quantmod: Update version to 0.4-11 ( #6212 )
2017-11-08 19:51:13 -07:00
Yifan Zhu
ecdaea1c8e
r-xml2: created new package ( #6217 )
2017-11-08 19:50:53 -07:00
lingnanyuan
1c2292dcd4
r-timedate: Create new package. ( #6215 )
2017-11-08 19:50:37 -07:00
lingnanyuan
5558cce438
r-fracdiff: Create new package. ( #6214 )
2017-11-08 19:50:18 -07:00
lingnanyuan
2cd57876c7
r-forecast: Create new package. ( #6213 )
2017-11-08 19:49:58 -07:00
Christoph Junghans
b3f678c1c0
gasnet: add 1.30.0 ( #6167 )
...
* gasnet: add 1.30.0
* gasnet: expose more options as variants
* gasnet: change defaults
2017-11-08 19:43:13 -07:00
Audrey Thoma
877bee3cb5
guidance: new package ( #6079 )
...
* guidance: new package
* not really fixed yet
* adding loop
* fixing url
* dang typos
2017-11-08 14:07:13 -07:00
lingnanyuan
dd3a6d7f18
r-ampliqueso: Create new package. ( #6132 )
2017-11-08 14:05:53 -07:00
Yifan Zhu
96f70606e8
r-tiff: created new package ( #6134 )
2017-11-08 14:05:33 -07:00
lingnanyuan
f73b409968
r-anaquin: Create new package. ( #6138 )
2017-11-08 14:05:17 -07:00
lingnanyuan
2cba0d4d5f
r-qvalue: Create new package. ( #6137 )
2017-11-08 14:05:00 -07:00
baip
4273ebac3c
libxsmm: add libs property ( #6193 )
2017-11-08 14:04:26 -07:00
lingnanyuan
17b9a479b6
r-aneufinderdata: Create new package. ( #6192 )
2017-11-08 14:03:35 -07:00
lingnanyuan
bb619aa091
r-aneufinder: Create new package. ( #6191 )
2017-11-08 14:03:22 -07:00
Christoph Junghans
d8db861fec
flecsi: fix build ( #6168 )
2017-11-08 14:03:05 -07:00
lingnanyuan
04f32377b2
r-rhtslib: Create new package. ( #6164 )
2017-11-08 14:02:12 -07:00
Audrey Thoma
3fcc911737
kraken: new package ( #6163 )
2017-11-08 14:01:55 -07:00
Audrey Thoma
743a87abb3
fpc: new package ( #6162 )
2017-11-08 14:01:31 -07:00
lingnanyuan
6556a5c914
r-cowplot: Create new package. ( #6190 )
2017-11-08 13:58:57 -07:00
Yifan Zhu
5f70d578ec
r-maldiquant: created new package ( #6188 )
2017-11-08 13:58:43 -07:00
lingnanyuan
860834e094
r-reordercluster: Create new package. ( #6187 )
2017-11-08 13:58:21 -07:00
Yifan Zhu
605c8e65b3
r-mzid: created new package ( #6186 )
2017-11-08 13:58:04 -07:00
Yifan Zhu
98baf49ba6
r-xde: created new package ( #6185 )
2017-11-08 13:57:46 -07:00
lingnanyuan
3943bc945b
r-ggdendro: Create new package. ( #6184 )
2017-11-08 13:57:30 -07:00
lingnanyuan
241e1b56b5
r-dnacopy: Create new package. ( #6183 )
2017-11-08 13:57:15 -07:00
Yifan Zhu
92a582d5f8
r-mergemaid: created new package ( #6182 )
2017-11-08 13:56:59 -07:00
lingnanyuan
146db9adef
r-bamsignals: Create new package. ( #6181 )
2017-11-08 13:56:34 -07:00
Yifan Zhu
87aafeb78a
r-xmapbridge: created new package ( #6180 )
2017-11-08 13:56:15 -07:00
Sergey Kosukhin
c7a855ba57
Missing dependency for 'cdo'. ( #6175 )
2017-11-08 13:55:57 -07:00
baip
ed00757265
gcc: add 5.5.0 ( #6171 )
2017-11-08 20:27:08 +01:00
vishalkenchan
392929ba77
lammps: add more packages ( #6174 )
...
* lammps : adding new varients and dependencies therein
* Update package.py
* removing trailing whitespaces
2017-11-08 09:01:14 -07:00
Matthew Scott Krafczyk
00d48e60bf
Fix for nghttp2 installation ( #5904 )
...
nghttp2 depends on python, and requires the install directory to exist,
and contain the python module directory which it will eventually
install the python modules into.
2017-11-07 15:59:15 -08:00
James Dickson
841d42b308
TyphonIO: new package + Updated MACSio package ( #6177 )
2017-11-07 13:13:06 -07:00
Audrey Thoma
8bae192d5c
repeatmasker: new package ( #6108 )
2017-11-06 17:27:42 -07:00
Michael Kuhn
ca73103dac
Introduce static_to_shared_library function ( #6092 )
...
The static_to_shared_library function takes an existing static library
and produces a shared library based on it.
2017-11-06 17:21:46 -07:00
Satish Balay
dc78e60c83
trilinos: update hdf5 dependency to use 'hdf5+hl' ( #6025 )
...
* trilinos: update hdf5 dependency to use 'hdf5+hl'
Without this change - I get the following error [triggered by 161dca6d5c9810f808
2017-11-06 13:03:06 -08:00
Luigi Calori
f0d33df3a9
some missing X11 "*proto" dependencies ( #6158 )
...
* fix xinput deps
* adding other x11 proto missing deps, see #6157
2017-11-06 13:02:05 -08:00
Satish Balay
436ebc4490
petsc: update petsc dependency on superlu-dist ( #6159 )
2017-11-06 12:52:10 -08:00
Yifan Zhu
cd4d26705e
Bioconductor package url change ( #5797 )
2017-11-06 11:17:59 -07:00
Michael Kuhn
450f2fa034
likwid: Use external lua if possible ( #6009 )
2017-11-06 11:14:34 -07:00
Douglas Duckworth
47b15feec3
added new package - MotionCor2 ( #6151 )
2017-11-06 11:09:46 -07:00
Denis Davydov
f538b7ac3e
dealii: make sure bundled libs are not used ( #6106 )
2017-11-06 12:38:59 +01:00
Besnard Jean-Baptiste
84c6fea32e
Graphviz : Add a GTS variant ( #6149 )
...
Enable support for the GNU Triangulated Surface Library
- New variant +gts for graphviz
- Optionnal dependency for GTS (already packaged)
2017-11-05 16:55:44 -08:00
