Commit graph

4654 commits

Author SHA1 Message Date
Todd Gamblin
3e570ce694 bugfix: allow imposed constraints to be overridden in special cases
In most cases, we want condition_holds(ID) to imply any imposed
constraints associated with the ID. However, the dependency relationship
in Spack is special because it's "extra" conditional -- a dependency
*condition* may hold, but we have decided that externals will not have
dependencies, so we need a way to avoid having imposed constraints appear
for nodes that don't exist.

This introduces a new rule that says that constraints are imposed
*unless* we define `do_not_impose(ID)`. This allows rules like
dependencies, which rely on more than just spec conditions, to cancel
imposed constraints.

We add one special case for this: dependencies of externals.
2021-03-16 12:50:14 +01:00
Todd Gamblin
e7cba04b95 bugfix: do not generate dep conditions when no dependency
We only consider test dependencies some of the time. Some packages are
*only* test dependencies. Spack's algorithm was previously generating
dependency conditions that could hold, *even* if there was no potential
dependency type.

- [x] change asp.py so that this can't happen -- we now only generate
      dependency types for possible dependencies.
2021-03-16 12:50:14 +01:00
Todd Gamblin
ada6ecc797 concretizer: unify logic for spec conditionals
This builds on #20638 by unifying all the places in the concretizer where
things are conditional on specs. Previously, we duplicated a common spec
conditional pattern for dependencies, virtual providers, conflicts, and
externals. That was introduced in #20423 and refined in #20507, and
roughly looked as follows.

Given some directives in a package like:

```python
depends_on("foo@1.0+bar", when="@2.0+variant")
provides("mpi@2:", when="@1.9:")
```

We handled the `@2.0+variant` and `@1.9:` parts by generating generated
`dependency_condition()`, `required_dependency_condition()`, and
`imposed_dependency_condition()` facts to trigger rules like this:

```prolog
dependency_conditions_hold(ID, Parent, Dependency) :-
  attr(Name, Arg1)             : required_dependency_condition(ID, Name, Arg1);
  attr(Name, Arg1, Arg2)       : required_dependency_condition(ID, Name, Arg1, Arg2);
  attr(Name, Arg1, Arg2, Arg3) : required_dependency_condition(ID, Name, Arg1, Arg2, Arg3);
  dependency_condition(ID, Parent, Dependency);
  node(Parent).
```

And we handled `foo@1.0+bar` and `mpi@2:` parts ("imposed constraints")
like this:

```prolog
attr(Name, Arg1, Arg2) :-
  dependency_conditions_hold(ID, Package, Dependency),
  imposed_dependency_condition(ID, Name, Arg1, Arg2).

attr(Name, Arg1, Arg2, Arg3) :-
  dependency_conditions_hold(ID, Package, Dependency),
  imposed_dependency_condition(ID, Name, Arg1, Arg2, Arg3).
```

These rules were repeated with different input predicates for
requirements (e.g., `required_dependency_condition`) and imposed
constraints (e.g., `imposed_dependency_condition`) throughout
`concretize.lp`. In #20638 it got to be a bit confusing, because we used
the same `dependency_condition_holds` predicate to impose constraints on
conditional dependencies and virtual providers. So, even though the
pattern was repeated, some of the conditional rules were conjoined in a
weird way.

Instead of repeating this pattern everywhere, we now have *one* set of
consolidated rules for conditions:

```prolog
condition_holds(ID) :-
  condition(ID);
  attr(Name, A1)         : condition_requirement(ID, Name, A1);
  attr(Name, A1, A2)     : condition_requirement(ID, Name, A1, A2);
  attr(Name, A1, A2, A3) : condition_requirement(ID, Name, A1, A2, A3).

attr(Name, A1)         :- condition_holds(ID), imposed_constraint(ID, Name, A1).
attr(Name, A1, A2)     :- condition_holds(ID), imposed_constraint(ID, Name, A1, A2).
attr(Name, A1, A2, A3) :- condition_holds(ID), imposed_constraint(ID, Name, A1, A2, A3).
```

this allows us to use `condition(ID)` and `condition_holds(ID)` to
encapsulate the conditional logic on specs in all the scenarios where we
need it. Instead of defining predicates for the requirements and imposed
constraints, we generate the condition inputs with generic facts, and
define predicates to associate the condition ID with a particular
scenario. So, now, the generated facts for a condition look like this:

```prolog
condition(121).
condition_requirement(121,"node","cairo").
condition_requirement(121,"variant_value","cairo","fc","True").
imposed_constraint(121,"version_satisfies","fontconfig","2.10.91:").
dependency_condition(121,"cairo","fontconfig").
dependency_type(121,"build").
dependency_type(121,"link").
```

The requirements and imposed constraints are generic, and we associate
them with their meaning via the id. Here, `dependency_condition(121,
"cairo", "fontconfig")` tells us that condition 121 has to do with the
dependency of `cairo` on `fontconfig`, and the conditional dependency
rules just become:

```prolog
dependency_holds(Package, Dependency, Type) :-
  dependency_condition(ID, Package, Dependency),
  dependency_type(ID, Type),
  condition_holds(ID).
```

Dependencies, virtuals, conflicts, and externals all now use similar
patterns, and the logic for generating condition facts is common to all
of them on the python side, as well. The more specific routines like
`package_dependencies_rules` just call `self.condition(...)` to get an id
and generate requirements and imposed constraints, then they generate
their extra facts with the returned id, like this:

```python
    def package_dependencies_rules(self, pkg, tests):
        """Translate 'depends_on' directives into ASP logic."""
        for _, conditions in sorted(pkg.dependencies.items()):
            for cond, dep in sorted(conditions.items()):
                condition_id = self.condition(cond, dep.spec, pkg.name)  # create a condition and get its id
                self.gen.fact(fn.dependency_condition(  # associate specifics about the dependency w/the id
                    condition_id, pkg.name, dep.spec.name
                ))
        # etc.
```

- [x] unify generation and logic for conditions
- [x] use unified logic for dependencies
- [x] use unified logic for virtuals
- [x] use unified logic for conflicts
- [x] use unified logic for externals

LocalWords:  concretizer mpi attr Arg concretize lp cairo fc fontconfig
LocalWords:  virtuals def pkg cond dep fn refactor github py
2021-03-16 12:50:14 +01:00
Harmen Stoppels
195341113e
Expand relative dev paths in environment files (#22045)
* Rewrite relative dev_spec paths internally to absolute paths in case of relocation of the environment file

* Test relative paths for dev_path in environments

* Add a --keep-relative flag to spack env create

This ensures that relative paths of develop paths are not expanded to
absolute paths when initializing the environment in a different location
from the spack.yaml init file.
2021-03-15 15:38:35 -05:00
Harmen Stoppels
4f1d9d6095
Propagate --test= for environments (#22040)
* Propagate --test= for environments

* Improve help comment for spack concretize --test flag

* Add tests for --test with environments
2021-03-15 15:34:18 -05:00
Adam J. Stewart
70c505a0b8
Fix use of quotes in Python build system (#22279) 2021-03-15 11:11:27 -07:00
Vanessasaurus
6ff717f395
do not validate variants of concrete specs in solver setup (#22272)
Currently, regardless of a spec being concrete or not, we validate its variants in `spec_clauses` (part of `SpackSolverSetup`).  

This PR skips the check if the spec is concrete.

The reason we want to do this is so that the solver setup class (really, `spec_clauses`) can be used for cases when we just want the logic statements / facts (is that what they are called?) and we don't need to re-validate an already concrete spec.  We can't change existing concrete specs, and we have to be able to handle them *even if they violate constraints in the current spack*.  This happens in practice if we are doing the validation for a spec produced by a different spack install.

Signed-off-by: vsoch <vsoch@users.noreply.github.com>
2021-03-14 19:00:15 +00:00
Vanessasaurus
746081e933
adding spack -c to set one off config arguments (#22251)
This pull request will add the ability for a user to add a configuration argument on the fly, on the command line, e.g.,:

```bash
$ spack -c config:install_tree:root:/path/to/config.yaml -c packages:all:compiler:[gcc] list --help
```
The above command doesn't do anything (I'm just getting help for list) but you can imagine having another root of packages, and updating it on the fly for a command (something I'd like to do in the near future!)

I've moved the logic for config_add that used to be in spack/cmd/config.py into spack/config.py proper, and now both the main.py (where spack commands live) and spack/cmd/config.py use these functions. I only needed spack config add, so I didn't move the others. We can move the others if there are also needed in multiple places.
2021-03-13 05:31:26 +00:00
Tamara Dahlgren
61baa40160
bugfix: ensure spack test list still works (#22203)
Was getting the following error:

```
$ spack test list
==> Error: issubclass() arg 1 must be a class
```

This PR adds a check in `has_test_method` (in case it is re-used elsewhere such as #22097) and ensures a class is passed to the method from `spack test list`.
2021-03-12 09:56:17 -08:00
Scott Wittenburg
7b97fe206b
Pipelines: Fix issue that allowed failing jobs to pass (#22199)
This is a workaround for an issue with how "spack install" is invoked from within "spack ci rebuild".  The fact that we don't get an exception or even the actual returncode when using the object returned by spack.util.executable.which('spack') to install the target spec means we get no indication of failures about the install command itself.  Instead we rely on the subsequent buildcache creation failure to fail the job.
2021-03-10 11:11:30 -08:00
Harmen Stoppels
1659beb220
Fix spack graph when deptypes are filtered (#22121) 2021-03-08 16:47:00 -08:00
Glenn Johnson
ccc7ed0af9
Add --vanilla flag to r build system (#22166)
Unlike the other commands of the `R CMD` interface, the `INSTALL` command
will read `Renviron` files. This can potentially break builds of r-
packages, depending on what is set in the `Renviron` file. This PR adds
the `--vanilla` flag to ensure that neither `Rprofile` nor `Renviron` files
are read during Spack builds of r- packages.
2021-03-08 15:53:12 -07:00
Todd Gamblin
8d3272f82d
spack python: add --path option (#22006)
This adds a `--path` option to `spack python` that shows the `python`
interpreter that Spack is using.

e.g.:

```console
$ spack python --path
/Users/gamblin2/src/spack/var/spack/environments/default/.spack-env/view/bin/python
```

This is useful for debugging, and we can ask users to run it to
understand what python Spack is picking up via preferences in `bin/spack`
and via the `SPACK_PYTHON` environment variable introduced in #21222.
2021-03-07 13:37:26 -08:00
Todd Gamblin
7aa5cc241d
add spack test list --all (#22032)
`spack test list` will show you which *installed* packages can be tested
but it won't show you which packages have tests.

- [x] add `spack test list --all` to show which packages have test methods
- [x] update `has_test_method()` to handle package instances *and*
      package classes.
2021-03-07 11:44:17 -08:00
Glenn Johnson
b5916451fd
Improve R package creation (#21861)
* Improve R package creation

This PR adds the `list_url` attribute to CRAN R packages when using
`spack create`. It also adds the `git` attribute to R Bioconductor
packages upon creation.

* Switch over to using cran/bioc attributes

The cran/bioc entries are set to have the '=' line up with homepage
entry, but homepage does not need to exist in the package file. If it
does not, that could affect the alignment.

* Do not have to split bioc

* Edit R package documentation

Explain Bioconductor packages and add `cran` and `bioc` attributes.

* Update lib/spack/docs/build_systems/rpackage.rst

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update lib/spack/docs/build_systems/rpackage.rst

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Simplify the cran attribute

The version can be faked so that the cran attribute is simply equal to
the CRAN package name.

* Edit the docs to reflect new `cran` attribute format

* Use the first element of self.versions() for url

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-03-05 21:19:15 +00:00
Greg Becker
92b7805e40
Allow relative paths in config files (relative to file dirname) (#21996)
This allows users to use relative paths for mirrors and repos and other things that may be part of a Spack environment.  There are two ways to do it.

1. Relative to the file

    ```yaml
    spack:
      repos:
      - local_dir/my_repository
    ```

    Which will refer to a repository like this in the directory where `spack.yaml` lives:

    ```
    env/
      spack.yaml  <-- the config file above
      local_dir/
        my_repository/  <-- this repository
          repo.yaml
          packages/
    ```

2. Relative to the environment

    ```yaml
    spack:
      repos:
      - $env/local_dir/my_repository
    ```

Both of these would refer to the same directory, but they differ for included files.  For example, if you had this layout:

```
env/
    spack.yaml
    repository/
    includes/
        repos.yaml
        repository/
```

And this `spack.yaml`:

```yaml
spack:
    include: includes/repos.yaml
```

Then, these two `repos.yaml` files are functionally different:

```yaml
repos:
    - $env/repository    # refers to env/repository/ above

repos:
    - repository    # refers to env/includes/repository/ above
```
    
The $env variable will not be evaluated if there is no active environment. This generally means that it should not be used outside of an environment's spack.yaml file. However, if other aspects of your workflow guarantee that there is always an active environment, it may be used in other config scopes.
2021-03-04 22:29:48 -08:00
Massimiliano Culpo
10e9e142b7
Bootstrap clingo from sources (#21446)
* Allow the bootstrapping of clingo from sources

Allow python builds with system python as external
for MacOS

* Ensure consistent configuration when bootstrapping clingo

This commit uses context managers to ensure we can
bootstrap clingo using a consistent configuration
regardless of the use case being managed.

* Github actions: test clingo with bootstrapping from sources

* Add command to inspect and clean the bootstrap store

 Prevent users to set the install tree root to the bootstrap store

* clingo: documented how to bootstrap from sources

Co-authored-by: Gregory Becker <becker33@llnl.gov>
2021-03-03 09:37:46 -08:00
Adam J. Stewart
50ffb4b868
Assert the use of the patch directive with a non-existing file will fail (#21524) 2021-03-02 09:58:47 +00:00
Tamara Dahlgren
e775cbb0c0
Raise InstallError if any explicit specs is skipped (#21980) 2021-02-27 09:21:56 +01:00
Gregory Lee
b56d65fce5
Compilers: make oneapi ifx version_regex tolerant to wrappers (#21742)
If a user creates a wrapper for the ifx binary called ifx_orig,
this causes the ifx --version command to produce:

$ ifx --version
ifx_orig (IFORT) 2021.1 Beta 20201113
Copyright (C) 1985-2020 Intel Corporation. All rights reserved.

The regex for ifx currently expects the output to begin with
"ifx (IFORT)..." so the wrapper would not be detected as ifx. This
PR removes the need for the static "ifx" string which allows wrappers
to be detected as ifx.

In general, the Intel compiler regexes do not include the invoked
executable name (i.e., ifort, icc, icx, etc.), so this is not
expected to cause any issues.
2021-02-26 14:57:40 -08:00
Andreas Baumbach
bbed6dc9a1
make spack fetch work with environments (#19166)
* make `spack fetch` work with environments
* previously: `spack fetch` required the explicit statement of
              the specs to be fetched, even when in an environment
* now: if there is no spec(s) provided to `spack fetch` we check
       if an environment is active and if yes we fetch all
       uninstalled specs.
2021-02-26 08:02:17 +00:00
Greg Becker
cedbded9d7
typo fix (#21967) 2021-02-25 19:10:55 -08:00
Michael Kuron
4453058862
Old concretizer: prevent unexpected propagation of external config (#20976)
When using an external package with the old concretizer, all
dependencies of that external package were severed. This was not
performed bidirectionally though, so for an external package W with
a dependency on Z, if some other package Y depended on Z, Z could
still pull properties (e.g. compiler) from W since it was not
severed as a parent dependency.

This performs the severing bidirectionally, and adds tests to
confirm expected behavior when using config from DAG-adjacent
packages during concretization.
2021-02-25 15:42:40 -08:00
Paul Ferrell
e85a8cde37
Config prefer upstream (#21487)
This allows for quickly configuring a spack install/env to use upstream packages by default. This is particularly important when upstreaming from a set of officially supported spack installs on a production cluster. By configuring such that package preferences match the upstream, you ensure maximal reuse of existing package installations.
2021-02-24 10:57:50 -08:00
Scott Wittenburg
ee5992783c
Gitlab fix pr workflow (#21786)
Fixes for gitlab pipelines

* Remove accidentally retained testing branch name
* Generate pipeline w/out debug mode
* Make jobs interruptible for auto-cancel pending
* Work around concretization conflicts
2021-02-23 19:19:06 -07:00
Josh Essman
93ed1a410c
Updates to support clingo-cffi (#20657)
* Support clingo when used with cffi

Clingo recently merged in a new Python module option based on cffi.

Compatibility with this module requires a few changes to spack - it does not automatically convert strings/ints/etc to Symbol and clingo.Symbol.string throws on failure.

manually convert str/int to clingo.Symbol types
catch stringify exceptions
add job for clingo-cffi to Spack CI
switch to potassco-vendored wheel for clingo-cffi CI
on_unsat argument when cffi
2021-02-23 23:46:37 +00:00
Nathan Hanford
8ef67e2b15
New splice method in class Spec. (#20262)
* Spec.splice feature

Construct a new spec with a dependency swapped out. Currently can only swap dependencies of the same name, and can only apply to concrete specs.

This feature is not yet attached to any install functionality, but will eventually allow us to "rewire" a package to depend on a different set of dependencies.

Docstring is reformatted for git below

Splices dependency "other" into this ("target") Spec, and return the result as a concrete Spec.

If transitive, then other and its dependencies will be extrapolated to a list of Specs and spliced in accordingly.

For example, let there exist a dependency graph as follows:

        T
        | \
        Z<-H

In this example, Spec T depends on H and Z, and H also depends on Z.

Suppose, however, that we wish to use a differently-built H, known as H'. This function will splice in the new H' in one of two ways:

1. transitively, where H' depends on the Z' it was built with, and the new T* also directly depends on this new Z', or
2. intransitively, where the new T* and H' both depend on the original Z.

Since the Spec returned by this splicing function is no longer deployed the same way it was built, any such changes are tracked by setting the build_spec to point to the corresponding dependency from the original Spec.

Co-authored-by: Nathan Hanford <hanford1@llnl.gov>
2021-02-23 13:56:00 -08:00
Peter Scheibel
76b1d97ca5
"spack build-env" searches env for relevant spec (#21642)
If you install packages using spack install in an environment with
complex spec constraints, and the install fails, you may want to
test out the build using spack build-env; one issue (particularly
if you use concretize: together) is that it may be hard to pass
the appropriate spec that matches what the environment is
attempting to install.

This updates the build-env command to default to pulling a matching
spec from the environment rather than concretizing what the user
provides on the command line independently.

This makes a similar change to spack cd.

If the user-provided spec matches multiple specs in the environment,
then these commands will now report an error and display all
matching specs (to help the user specify).

Co-authored-by: Gregory Becker <becker33@llnl.gov>
2021-02-23 11:45:50 -08:00
Peter Scheibel
e72ad6223a
reduce strictness of directory layout spec-equality check (#21869) 2021-02-23 09:53:07 -08:00
Massimiliano Culpo
7226bd64dc
Improve error message for inconsistencies in package.py (#21811)
* Improve error message for inconsistencies in package.py

Sometimes directives refer to variants that do not exist.
Make it such that:

1. The name of the variant
2. The name of the package which is supposed to have
   such variant
3. The name of the package making this assumption

are all printed in the error message for easier debugging.

* Add unit tests
2021-02-22 19:09:43 -08:00
Todd Gamblin
56e57769bd Merge tag 'v0.16.1' into develop 2021-02-22 17:41:46 -08:00
Greg Becker
482a1a86be
respect -k/verify-ssl-false in _existing_url method (#21864) 2021-02-22 22:00:59 +00:00
Tamara Dahlgren
8dd2d740b1 Update CHANGELOG and release version 2021-02-19 11:06:33 -08:00
Tamara Dahlgren
d0798160cf Resolve (post-cherry-picking) flake8 errors 2021-02-19 11:05:53 -08:00
Tom Payerle
f5e65e94e6
documentation: correct precedence of included configs in environment spack.yaml (#18663)
fixes #17993
2021-02-19 13:31:47 +00:00
Greg Becker
de5a396ecb
bugfix: add build deps to 'full hash' (#21735)
The "full hash" was only including the link/run deps, but it should include build deps as well.
2021-02-19 00:51:00 -08:00
Scott Wittenburg
6b509a95da
Pipelines: Move PR testing stacks (currently only E4S) into spack (#21714) 2021-02-18 18:50:57 -07:00
Tom Payerle
362a4bb8b9
Fix template for Rpackage in spack create command (#21776)
The signature for configure_args in the template for new
RPackage packages was incorrect (different than what is
defined and used in lib/spack/spack/build_systems/r.py)

See issue #21774
2021-02-18 22:40:21 +00:00
Massimiliano Culpo
f2e3edf6db
Testing: use spack.store.use_store everywhere (#21656)
Keep spack.store.store and spack.store.db consistent in unit tests

* Remove calls to monkeypatch for spack.store.store and spack.store.db:
  tests that used these called one or the other, which lead to
  inconsistencies (the tests passed regardless but were fragile as a
  result)
* Fixtures making use of monkeypatch with mock_store now use the
  updated use_store function, which sets store.store and store.db
  consistently
* subprocess_context.TestState now transfers the serializes and
  restores spack.store.store (without the monkeypatch changes this
  would have created inconsistencies)
2021-02-18 13:22:49 -08:00
Tom Payerle
b448b639e6
Documentation fix: build_system configure_args for #21760 (#21761)
Corrects the signature for configure_args (and therefore configure_vars)
in documentation on RPackage build system to match the code
See issue #21760
2021-02-18 18:08:48 +00:00
Todd Gamblin
7d586234ee
bugfix: relax racy test in fg/bg output (#21755)
Since signals are fundamentally racy, We can't bound the amount of time
that the `test_foreground_background_output` test will take to get to
'on', we can only observe that it transitions to 'on'. So instead of
using an arbitrary limit, just adjust the test to allow either 'on' or
'off' followed by 'on'.

This should eliminate the spurious errors we see in CI.
2021-02-18 08:33:08 +00:00
Massimiliano Culpo
8aaf31b166
Avoid spurious warning from clingo (#21731)
There's a spurious warning that occurs whenever a spec being concretized 
does not depend on a virtual provider under any possible configuration.
2021-02-18 08:13:50 +01:00
Adam J. Stewart
3256f018eb apple-clang: add correct path to compiler wrappers (#21662)
Follow-up to #17110

### Before
```bash
CC=/Users/Adam/spack/lib/spack/env/clang/clang; export CC
SPACK_CC=/usr/bin/clang; export SPACK_CC
PATH=...:/Users/Adam/spack/lib/spack/env/apple-clang:/Users/Adam/spack/lib/spack/env/case-insensitive:/Users/Adam/spack/lib/spack/env:...; export PATH
```

### After
```bash
CC=/Users/Adam/spack/lib/spack/env/clang/clang; export CC
SPACK_CC=/usr/bin/clang; export SPACK_CC
PATH=...:/Users/Adam/spack/lib/spack/env/clang:/Users/Adam/spack/lib/spack/env/case-insensitive:/Users/Adam/spack/lib/spack/env:...; export PATH
```

`CC` and `SPACK_CC` were being set correctly, but `PATH` was using the name of the compiler `apple-clang` instead of `clang`. For most packages, since `CC` was set correctly, nothing broke. But for packages using `Makefiles` that set `CC` based on `which clang`, it was using the system compilers instead of the compiler wrappers. Discovered when working on `py-xgboost@0.90`.

An alternative fix would be to copy the symlinks in `env/clang` to `env/apple-clang`. Let me know if you think there's a better way to do this, or to test this.
2021-02-17 17:07:48 -08:00
Greg Becker
240726a2e1 add intel oneapi to compiler/pkg translations (#21448) 2021-02-17 17:07:46 -08:00
Yang Zongze
40d32890d0 Print groups properly for spack find -d (#20028) 2021-02-17 17:07:45 -08:00
eugeneswalker
18022050f2 store sbang_install_path in buildinfo, use for subsequent relocation (#20768) 2021-02-17 17:07:44 -08:00
Nathan Hanford
cdd86bddec [WIP] relocate.py: parallelize test replacement logic (#19690)
* sbang pushed back to callers;
star moved to util.lang

* updated unit test

* sbang test moved; local tests pass

Co-authored-by: Nathan Hanford <hanford1@llnl.gov>
2021-02-17 17:07:44 -08:00
Massimiliano Culpo
488a08b464 concretizer: require at least a dependency type to say the dependency holds
fixes #20784

Similarly to the previous bug, here we were deducing
conditions to be imposed on nodes that were not part
of the DAG.
2021-02-17 17:07:43 -08:00
Massimiliano Culpo
7162e15531 concretizer: dependency conditions cannot hold if package is external
fixes #20736

Before this one line fix we were erroneously deducing
that dependency conditions hold even if a package
was external.

This may result in answer sets that contain imposed
conditions on a node without the node being present
in the DAG, hence #20736.
2021-02-17 17:07:42 -08:00
Robert Underwood
c99850dd58 restore ability of dev-build to skip patches (#20351)
At some point in the past, the skip_patch argument was removed
from the call to package.do_install() this broke the --skip-patch
flag on the dev-build command.
2021-02-17 17:07:41 -08:00
Massimiliano Culpo
ddd9c86ce0 concretizer: make rules on virtual packages more linear
fixes #20679

In this refactor we have a single cardinality rule on the
provider, which triggers a rule transforming a dependency
on a virtual package into a dependency on the provider of
the virtual.
2021-02-17 17:07:39 -08:00
Todd Gamblin
8e442d6dc1 concretizer: use consistent naming for compiler predicates (#20677)
Every other predicate in the concretizer uses a `_set` suffix to
implement user- or package-supplied settings, but compiler settings use a
`_hard` suffix for this. There's no difference in how they're used, so
make the names the same.

- [x] change `node_compiler_hard` to `node_compiler_set`
- [x] change `node_compiler_version_hard` to `node_compiler_version_set`
2021-02-17 17:07:38 -08:00
Todd Gamblin
9393d97139 concretizer: simplify handling of virtual version constraints
Previously, the concretizer handled version constraints by comparing all
pairs of constraints and ensuring they satisfied each other. This led to
INCONSISTENT ressults from clingo, due to ambiguous semantics like:

    version_constraint_satisfies("mpi", ":1", ":3")
    version_constraint_satisfies("mpi", ":3", ":1")

To get around this, we introduce possible (fake) versions for virtuals,
based on their constraints. Essentially, we add any Versions,
VersionRange endpoints, and all such Versions and endpoints from
VersionLists to the constraint. Virtuals will have one of these synthetic
versions "picked" by the solver. This also allows us to remove a special
case from handling of `version_satisfies/3` -- virtuals now work just
like regular packages.
2021-02-17 17:07:38 -08:00
Todd Gamblin
8f85ab88c0 concretizer: remove rule generation code from concretizer
Our program only generates facts now, so remove all unused code related
to generating cardinality constraints and rules.
2021-02-17 17:07:37 -08:00
Todd Gamblin
247e73e85a concretizer: convert virtuals to facts; move all rules to concretize.lp
This converts the virtual handling in the new concretizer from
already-ground rules to facts. This is the last thing that needs to be
refactored, and it converts the entire concretizer to just use facts.

The previous way of handling virtuals hinged on rules involving
`single_provider_for` facts that were tied to the virtual and a version
range. The new method uses the condition pattern we've been using for
dependencies, externals, and conflicts.

To handle virtuals as conditions, we impose constraints on "fake" virtual
specs in the logic program. i.e., `version_satisfies("mpi", "2.0:",
"2.0")` is legal whereas before we wouldn't have seen something like
this. Currently, constriants are only handled on versions -- we don't
handle variants or anything else yet, but they key change here is that we
*could*. For a long time, virtual handling in Spack has only dealt with
versions, and we'd like to be able to handle variants as well. We could
easily add an integrity constraint to handle variants like the one we use
for versions.

One issue with the implementation here is that virtual packages don't
actually declare possible versions like regular packages do. To get
around that, we implement an integrity constraint like this:

    :- virtual_node(Virtual),
       version_satisfies(Virtual, V1), version_satisfies(Virtual, V2),
       not version_constraint_satisfies(Virtual, V1, V2).

This requires us to compare every version constraint to every other, both
in program generation and within the concretizer -- so there's a
potentially quadratic evaluation time on virtual constraints because we
don't have a real version to "anchor" things to. We just say that all the
constraints need to agree for the virtual constraint to hold.

We can investigate adding synthetic versions for virtuals in the future,
to speed this up.
2021-02-17 17:07:37 -08:00
Todd Gamblin
6056cb71d3 concretizer: consolidate handling of virtuals into spec_clauses 2021-02-17 17:07:36 -08:00
Todd Gamblin
66376ab971 concretizer: make _condtion_id_counter an iterator 2021-02-17 17:07:36 -08:00
Todd Gamblin
9bb0375443 concretizer: more detailed section headers in concretize.lp 2021-02-17 17:07:35 -08:00
Todd Gamblin
56acb5a0c7 bugfix: infinite loop when building a set from incomplete specs (#20649)
This code in `SpecBuilder.build_specs()` introduced in #20203, can loop
seemingly interminably for very large specs:

```python
set([spec.root for spec in self._specs.values()])
```

It's deceptive, because it seems like there must be an issue with
`spec.root`, but that works fine. It's building the set afterwards that
takes forever, at least on `r-rminer`. Currently if you try running
`spack solve r-rminer`, it loops infinitely and spins up your fan.

The issue (I think) is that the spec is not yet complete when this is
run, and something is going wrong when constructing and comparing so many
values produced by `_cmp_key()`. We can investigate the efficiency of
`_cmp_key()` separately, but for now, the fix is:

```python
roots = [spec.root for spec in self._specs.values()]
roots = dict((id(r), r) for r in roots)
```

We know the specs in `self._specs` are distinct (they just came out of
the solver), so we can just use their `id()` to unique them here. This
gets rid of the infinite loop.
2021-02-17 17:07:35 -08:00
Massimiliano Culpo
ec42016241 concretizer: generate facts for externals
Generate only facts for external specs. Substitute the
use of already grounded rules with non-grounded rules
in concretize.lp
2021-02-17 17:07:35 -08:00
Greg Becker
f7195123d4 bugfix: do not write empty default dicts/lists in envs (#20526)
Environment yaml files should not have default values written to them.

To accomplish this, we change the validator to not add the default values to yaml. We rely on the code to set defaults for all values (and use defaulting getters like dict.get(key, default)).

Includes regression test.
2021-02-17 17:07:34 -08:00
Robert Cohn
290043b72a Add Intel oneAPI packages (#20411)
This creates a set of packages which all use the same script to install
components of Intel oneAPI. This includes:

* An inheritable IntelOneApiPackage which knows how to invoke the
  installation script based on which components are requested
* For components which include headers/libraries, an inheritable
  IntelOneApiLibraryPackage is provided to locate them
* Individual packages for DAL, DNN, TBB, etc.
* A package for the Intel oneAPI compilers (icx/ifx). This also includes
  icc/ifortran but these are not currently detected in this PR
2021-02-17 17:07:33 -08:00
Todd Gamblin
1a1babe185 concretizer: refactor conditional rules to be less repetitious (#20507)
We have to repeat all the spec attributes in a number of places in
`concretize.lp`, and Spack has a fair number of spec attributes. If we
instead add some rules up front that establish equivalencies like this:

```
    node(Package) :- attr("node", Package).
    attr("node", Package) :- node(Package).

    version(Package, Version) :- attr("version", Package, Version).
    attr("version", Package, Version) :- version(Package, Version).
```

We can rewrite most of the repetitive conditions with `attr` and repeat
only for each arity (there are only 3 arities for spec attributes so far)
as opposed to each spec attribute. This makes the logic easier to read
and the rules easier to follow.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-02-17 17:07:32 -08:00
Massimiliano Culpo
acd523c7f3 concretizer: optimize loop on compiler version
Similar to the optimization on platform
2021-02-17 17:07:32 -08:00
Massimiliano Culpo
4bbc6eec51 concretizer: optimized loop on node platforms
We can speed-up the computation by avoiding a
double loop in a cardinality constraint and
enforcing the rule instead as an integrity
constraint.
2021-02-17 17:07:31 -08:00
Massimiliano Culpo
cb76c5a90d concretizer: fix failing unit tests 2021-02-17 17:07:31 -08:00
Massimiliano Culpo
ab3f53d781 concretizer: emit facts for integrity constraints 2021-02-17 17:07:30 -08:00
Massimiliano Culpo
364c5b636c concretizer: emit facts for constraints on imposed dependencies 2021-02-17 17:07:30 -08:00
Massimiliano Culpo
02e0ea6105 concretizer: avoid redundant grounding on dependency types 2021-02-17 17:07:30 -08:00
Todd Gamblin
ff9ee9f243 concretizer: move conditional dependency logic into concretize.lp
Continuing to convert everything in `asp.py` into facts, make the
generation of ground rules for conditional dependencies use facts, and
move the semantics into `concretize.lp`.

This is probably the most complex logic in Spack, as dependencies can be
conditional on anything, and we need conditional ASP rules to accumulate
and map all the dependency conditions to spec attributes.

The logic looks complicated, but essentially it accumulates any
constraints associated with particular conditions into a fact associated
with the condition by id. Then, if *any* condition id's fact is True, we
trigger the dependency.

This simplifies the way `declared_dependency()` works -- the dependency
is now declared regardless of whether it is conditional, and the
conditions are handled by `dependency_condition()` facts.
2021-02-17 17:07:29 -08:00
Todd Gamblin
6c6631cfdc concretizer: spec_clauses should traverse dependencies
There are currently no places where we do not want to traverse
dependencies in `spec_clauses()`, so simplify the logic by consolidating
`spec_traverse_clauses()` with `spec_clauses()`.
2021-02-17 17:07:29 -08:00
Todd Gamblin
ea617f807f concretizer: pull _develop_specs_from_env out of main setup loop 2021-02-17 17:07:28 -08:00
Todd Gamblin
d0dfd3cb82 concretizer: add #defined statements to avoid warnings.
`version_satisfies/2` and `node_compiler_version_satisfies/3` are
generated but need `#defined` directives to avoid " info: atom does not
occur in any rule head:" warnings.
2021-02-17 17:07:28 -08:00
Massimiliano Culpo
a4066a52be asp: memoize the list of all target_specs to speed-up setup phase (#20473)
* asp: memoize the list of all target_specs to speed-up setup phase

* asp: memoize using a cache per solver object
2021-02-17 17:07:28 -08:00
Scott Wittenburg
18c5f10ae7 ci: fixes for compiler bootstrapping (#17563)
This PR addresses a number of issues related to compiler bootstrapping.

Specifically:
1. Collect compilers to be bootstrapped while queueing in installer
Compiler tasks currently have an incomplete list in their task.dependents,
making those packages fail to install as they think they have not all their
dependencies installed. This PR collects the dependents and sets them on
compiler tasks.

2. allow boostrapped compilers to back off target
Bootstrapped compilers may be built with a compiler that doesn't support
the target used by the rest of the spec.  Allow them to build with less
aggressive target optimization settings.

3. Support for target ranges
Backing off the target necessitates computing target ranges, so make Spack
handle those properly.  Notably, this adds an intersection method for target
ranges and fixes the way ranges are satisfied and constrained on Spec objects.

This PR also:
- adds testing
- improves concretizer handling of target ranges

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
Co-authored-by: Gregory Becker <becker33@llnl.gov>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-02-17 17:07:27 -08:00
Massimiliano Culpo
d82d2bb2db unit-tests: ensure that installed packages can be reused (#20307)
refers #20292

Added a unit test that ensures we can reuse installed
packages even if in the repository variants have been
removed or added.
2021-02-17 17:07:27 -08:00
Greg Becker
378af922a2 Fix comparisons for abstract specs (#20341)
bug only relevant for python3
2021-02-17 17:07:27 -08:00
Todd Gamblin
12d035b225 concretizer: don't use one_of_iff for range constraints (#20383)
Currently, version range constraints, compiler version range constraints,
and target range constraints are implemented by generating ground rules
from `asp.py`, via `one_of_iff()`.  The rules look like this:

```
version_satisfies("python", "2.6:") :- 1 { version("python", "2.4"); ... } 1.
1 { version("python", "2.4"); ... } 1. :- version_satisfies("python", "2.6:").
```

So, `version_satisfies(Package, Constraint)` is true if and only if the
package is assigned a version that satisfies the constraint. We
precompute the set of known versions that satisfy the constraint, and
generate the rule in `SpackSolverSetup`.

We shouldn't need to generate already-ground rules for this. Rather, we
should leave it to the grounder to do the grounding, and generate facts
so that the constraint semantics can be defined in `concretize.lp`.

We can replace rules like the ones above with facts like this:

```
version_satisfies("python", "2.6:", "2.4")
```

And ground them in `concretize.lp` with rules like this:

```
1 { version(Package, Version) : version_satisfies(Package, Constraint, Version) } 1
  :- version_satisfies(Package, Constraint).
version_satisfies(Package, Constraint)
  :- version(Package, Version), version_satisfies(Package, Constraint, Version).
```

The top rule is the same as before. It makes conditional dependencies and
other places where version constraints are used work properly. Note that
we do not need the cardinality constraint for the second rule -- we
already have rules saying there can be only one version assigned to a
package, so we can just infer from `version/2` `version_satisfies/3`.
This form is also safe for grounding -- If we used the original form we'd
have unsafe variables like `Constraint` and `Package` -- the original
form only really worked when specified as ground to begin with.

- [x] use facts instead of generating rules for package version constraints
- [x] use facts instead of generating rules for compiler version constraints
- [x] use facts instead of generating rules for target range constraints
- [x] remove `one_of_iff()` and `iff()` as they're no longer needed
2021-02-17 17:07:26 -08:00
Massimiliano Culpo
bf3a873a42 package sanity: ensure all variant defaults are allowed values (#20373) 2021-02-17 17:07:26 -08:00
Todd Gamblin
27f6b3df92 concretizer: remove clingo command-line driver (#20362)
I was keeping the old `clingo` driver code around in case we had to run
using the command line tool instad of through the Python interface.

So far, the command line is faster than running through Python, but I'm
working on fixing that.  I found that if I do this:

```python
control = clingo.Control()
control.load("concretize.lp")
control.load("hdf5.lp")       # code from spack solve --show asp hdf5
control.load("display.lp")

control.ground([("base", [])])
control.solve(...)
```

It's just as fast as the command line tool. So we can always generate the
code and load it manually if we need to -- we don't need two drivers for
clingo. Given that the python interface is also the only way to get unsat
cores, I think we pretty much have to use it.

So, I'm removing the old command line driver and other unused code. We
can dig it up again from the history if it is needed.
2021-02-17 17:07:25 -08:00
Tamara Dahlgren
802c5bdff7 Tests: enable re-use of post-install tests in smoke tests (#20298) 2021-02-17 17:07:25 -08:00
Andrew W Elble
ab3f1b10db concretizer: try hard to obtain all needed variant_possible_value()'s (#20102)
Track all the variant values mentioned when emitting constraints, validate them
and emit a fact that allows them as possible values.

This modification ensures that open-ended variants (variants accepting any string 
or any integer) are projected to the finite set of values that are relevant for this 
concretization.
2021-02-17 17:07:24 -08:00
Massimiliano Culpo
30a9e6462f bugfix: work around issue handling packages not in any repo 2021-02-17 17:07:24 -08:00
Todd Gamblin
0e725f0ab1 concretizer: refactor handling of special variants dev_build and patches
Other parts of the concretizer code build up lists of things we can't
know without traversing all specs and packages, and they output these
list at the very end.

The code for this for variant values from spec literals was intertwined
with the code for traversing the input specs. This only covers the input
specs and misses variant values that might come from directives in
packages.

- [x] move ad-hoc value handling code into spec_clauses so we do it in
  one place for CLI and packages

- [x] move handling of `variant_possible_value`, etc. into
  `concretize.lp`, where we can automatically infer variant existence
  more concisely.

- [x] simplify/clarify some of the code for variants in `spec_clauses()`
2021-02-17 17:07:23 -08:00
Massimiliano Culpo
ecfba13d89 concretizer: each external version is allowed by definition (#20247)
Registering external versions among the lists of allowed ones
generates the correct rules for `version_satisfies`
2021-02-17 17:07:22 -08:00
Massimiliano Culpo
a6d433b937 concretizer: restrict maximizing variant values to MV variants (#20194) 2021-02-17 17:07:22 -08:00
Matthias Wolf
b4f79f3cb7 environment installs: fix reporting. (#20004)
PR #15702 changed the invocation of the report context when installing
specs, do the same when building environments.
2021-02-17 17:07:22 -08:00
Greg Becker
30290acf67 avoid circular import (#20236) 2021-02-17 17:07:21 -08:00
Andrew W Elble
92de484228 concretizer: call inject_patches_variants() on the roots of the specs (#20203)
As was done in the old concretizer. Fixes an issue where conditionally
patched dependencies did not show up in spec (gdal+jasper)
2021-02-17 17:07:21 -08:00
Massimiliano Culpo
b78cc5b43d concretizer: try hard to infer the real version of compilers (#20099)
fixes #20055

Compiler with custom versions like gcc@foo are not currently
matched to the appropriate targets. This is because the
version of spec doesn't match the "real" version of the
compiler.

This PR replicates the strategy used in the original
concretizer to deal with that and tries to detect the real
version of compilers if the version in the spec returns no
results.
2021-02-17 17:07:21 -08:00
Harmen Stoppels
571e36787b Fix hipcc once more (#20095) 2021-02-17 17:07:20 -08:00
Andrew W Elble
598c25b434 concretizer: don't optimize emitting version_satisfies() (#20128)
When all versions were allowed a version_satisfies rule was not emitted,
and this caused conditional directives to fail.
2021-02-17 17:07:19 -08:00
Massimiliano Culpo
0b7a22dea2 spec: return early from concretization if a spec is already concrete (#20196) 2021-02-17 17:07:18 -08:00
Massimiliano Culpo
1e1a6f4e30 concretizer: remove ad-hoc rule for external packages (#20193)
fixes #20040

Matching compilers among nodes has been prioritized
in #20020. Selection of default variants has been
tuned in #20182. With this setup there is no need
to have an ad-hoc rule for external packages. On
the contrary it should be removed to prefer having
default variant values over more external nodes in
the DAG.
2021-02-17 17:07:18 -08:00
Massimiliano Culpo
22d7937c50 concretizer: swap priority of selecting provider and default variant (#20182)
refers #20040

Before this PR optimization rules would have selected default
providers at a higher priority than default variants. Here we
swap this priority and we consider variants that are forced by
any means (root spec or spec in depends_on clause) the same as
if they were with a default value.

This prevents the solver from avoiding expected configurations
just because they contain directives like:

depends_on('pkg+foo')

and `+foo` is not the default variant value for pkg.
2021-02-17 17:07:18 -08:00
George Hartzell
96283867d6 Typos: add missing closing parens (#20174) 2021-02-17 17:07:17 -08:00
Massimiliano Culpo
d7ffdd76f6 concretizer: treat target ranges in directives correctly (#19988)
fixes #19981

This commit adds support for target ranges in directives,
for instance:

conflicts('+foo', when='target=x86_64:,aarch64:')

If any target in a spec body is not a known target the
following clause will be emitted:

node_target_satisfies(Package, TargetConstraint)

when traversing the spec and a definition of
the clause will then be printed at the end similarly
to what is done for package and compiler versions.
2021-02-17 17:07:17 -08:00
Massimiliano Culpo
b326d59e10 concretizer: prioritize matching compilers over newer versions (#20020)
fixes #20019

Before this modification having a newer version of a node came
at higher priority in the optimization than having matching
compilers. This could result in unexpected configurations for
packages with conflict directives on compilers of the type:

conflicts('%gcc@X.Y:', when='@:A.B')

where changing the compiler for just that node is preferred to
lower the node version to less than 'A.B'. Now the priority has
been switched so the solver will try to lower the version of the
nodes in question before changing their compiler.
2021-02-17 17:07:16 -08:00
Massimiliano Culpo
0ae49821e2 concretizer: allow a bool to be passed as argument for tests dependencies (#20082)
refers #20079

Added docstrings to 'concretize' and 'concretized' to
document the format for tests.

Added tests for the activation of test dependencies.
2021-02-17 17:07:16 -08:00
Massimiliano Culpo
8e1b5f734f concretizer: treat conditional providers correctly (#20086)
refers #20040

This modification emits rules like:

provides_virtual("netlib-lapack","blas") :- variant_value("netlib-lapack","external-blas","False").

for packages that provide virtual dependencies conditionally instead
of a fact that doesn't account for the condition.
2021-02-17 17:07:16 -08:00