Commit graph

16039 commits

Author SHA1 Message Date
Michael Kuhn
f12ae1bcd0
Fix typo for allow_sgid (#16806)
fixes #14425

The config: prefix should be included in the actual option name and
makes it impossible to change this option.
2020-05-25 18:49:35 +02:00
Stephen Herbein
c4031f0455
lua: fix compilation on Cray (#16713)
Problem: when calling `static_to_shared_library` on the `cray` arch, it
produces a non-sensical compiler command with no input files.  For
example, when installing lua@5.2.4, it produced:
'gcc -lm -ldl -o /big-long-spack-path/liblua.so.5.2.4'

Solution: do the same thing on `cray` that is done for `linux`
2020-05-25 15:18:47 +02:00
Tom Payerle
17e4a72191
netcdf-cxx4: remove erroneous variants (#16762)
fixes #16725

The dap, jna, pnetcdf, netcdf4, and ncgen4 variants added in #16047
are _not_ supported by the configure script for netcdf-cxx4 package 
(These appear to be configure args for netcdf-c package).
2020-05-25 15:15:30 +02:00
Peter Scheibel
768fa6bc53
bugfix: schema errors without line numbers (#16765)
* account for schema validation errors where the associated instance doesn't have a line number

* fix unrelated flake error (but it must be fixed because this PR touches this file and the flake rules have been updated since the last edit to this file)
2020-05-25 15:08:47 +02:00
Stephen Hudson
a3dc9cf848
libensemble: added v0.7.0 (#16773) 2020-05-25 14:35:44 +02:00
Michael Kuhn
30fb364452
py-gdbgui: added v0.13.2.0 (#16781) 2020-05-25 14:34:26 +02:00
Michael Kuhn
5a335e4985
py-pygdbmi: added v0.9.0.3 (#16778) 2020-05-25 14:33:41 +02:00
Mark W. Krentel
f370bc0fa2
libmonitor: added v2019.05.31 (#16774) 2020-05-25 14:31:16 +02:00
Michael Kuhn
9f2fc52165
py-pygments: added v2.6.1 (#16776) 2020-05-25 14:23:41 +02:00
Michael Kuhn
d0e4414bb6
libunwind: fix build with gcc@10: (#16782) 2020-05-25 14:22:51 +02:00
Michael Kuhn
232cdb85a5
python: added v3.8.3 (#16775) 2020-05-25 13:59:47 +02:00
Michael Kuhn
0c735b8f1a
meson: added v0.54.2 (#16777) 2020-05-25 13:52:13 +02:00
Michael Kuhn
8395db361c
py-flask: added v1.1.2 and v0.12.4 (#16779) 2020-05-25 13:51:08 +02:00
Amjad Kotobi
5df64769e3
r-matlab: new package at v1.0.2 (#16785) 2020-05-25 13:48:24 +02:00
darmac
6f85dc66a7
testdfsio: added new package at v0.0.1 (#16789) 2020-05-25 13:46:42 +02:00
darmac
99d9967b8b
sqoop: added new package at v1.99.7 (#16786) 2020-05-25 13:41:08 +02:00
Michael Kuhn
995714cba5
glib: added v2.64.3 (#16800) 2020-05-25 13:32:42 +02:00
darmac
04f60afc08
ffsb: added new package at v5.2.1 (#16791) 2020-05-25 13:16:55 +02:00
Tomoki, Karatsu
821c729ec0
netlib-scalapack: specify MPI's location for Fujitsu-MPI. (#16798)
Fujitsu-MPI wrapper commands aren't recognized from 'FindMPI' 
function of 'cmake'. If we are using the Fujitsu compiler and Fujitsu MPI, 
specify the MPI path information explicitly.
2020-05-25 13:12:13 +02:00
David Pape
6d913ddab7
likwid: fixed failing build on powerpc (#16797)
Fixes #16783
2020-05-25 13:10:12 +02:00
Kevin Huck
bc145b2b3f
TAU: remove ~nls constraint on binutils dependency
TAU does not require ~nls.
2020-05-22 19:40:28 -07:00
Stephen Herbein
5108fe314b flux-sched: add dependency type for flux-core 2020-05-22 19:37:47 -07:00
Stephen Herbein
a74ee4d27a flux: add dependency types for python dependency
Flux requires `build` for python and many of the python packages because
it builds python bindings.  Beyond the bindings, the Flux front-end
commands now use python too, hence the `run` type. Finally, Flux's
`pymod` module is linked against the python interpreter, so the package
requires a `link` dependency on python too.
2020-05-22 19:37:47 -07:00
Stephen Herbein
9e3470d797 flux: add latest releases and checksum
The next release 0.17.0 will also require python3.6+, pre-emptively
prepare for that release.  Also support current master branch.
2020-05-22 19:37:47 -07:00
Amjad Kotobi
eee6942c8b r-nimble: New package 2020-05-22 19:30:41 -07:00
Amjad Kotobi
9bcf4480b5 r-rferns: New package 2020-05-22 19:20:52 -07:00
Luca Heltai
55eb192234
dealii: 9.2.0 release (#16743) 2020-05-22 19:19:19 -07:00
Amjad Kotobi
3a336b328a
r-reticulate: add version; dependencies (#16747)
* Add version 1.15
* Add link dependency on r-rcpp
* Add dependency on r-rappdirs
2020-05-22 19:17:11 -07:00
Sergey Kosukhin
e18c5316bd cdo: fix url for version 1.9.8 2020-05-22 19:12:10 -07:00
Miroslav Stoyanov
86dd42ec70
tasmanian: add version 7.1 (#16769) 2020-05-22 19:10:21 -07:00
Michael Kuhn
be570aa655 zstd: Add 1.4.5 2020-05-22 19:07:29 -07:00
Adam J. Stewart
f17352f6f7
py-horovod: add 0.19.3 (#16768) 2020-05-22 19:20:25 -05:00
Seth R. Johnson
6ac8cf8126
IWYU: fix 0.14 build (#16761)
* IWYU: fix 0.14 build

The CMake patch used for 0.13 hadn't been applied to the master when
0.14 was released, and this version of IWYU requires C++14 or higher.

* Flake8
2020-05-22 15:07:59 -05:00
Seth R. Johnson
04046c15de
Mark Valgrind as conflicting with macOS > 10.13 (#16759)
```
    '/var/folders/fy/x2xtwh1n7fn0_0q2kk29xkv9vvmbqb/T/s3j/spack-stage/spack-stage-valgrind-3.15.0-mtir7ubjz7mqmjbb7bogze2qm35hl4ze/spack-src/configure' '--prefix=/ornldev/code/spack/opt/spack/clang-11.0.0-apple/valgrind/mtir7ub' '--enable-only64bit' '--build=amd64-darwin'
1 error found in build log:
     43    checking host system type... x86_64-pc-darwin
     44    checking for a supported CPU... ok (x86_64)
     45    checking for a 64-bit only build... yes
     46    checking for a 32-bit only build... no
     47    checking for a supported OS... ok (darwin)
     48    checking for the kernel version... unsupported (18.7.0)
  >> 49    configure: error: Valgrind works on Darwin 10.x, 11.x, 12.x, 13.x, 14.x, 15.x, 16.x and 17.x (Mac OS X 10.6/7/8/9/10/11 and macOS 10.12/13)
```
2020-05-22 15:07:45 -05:00
Seth R. Johnson
106a121b83
[Trilinos] Make MPI optional (#16685)
* Make MPI optional for Trilinos

* Use 'define' and 'define_from_variant' in trilinos package
2020-05-22 14:40:21 -05:00
Ethan Stam
7449bf8bab
ParaView: conflict ~opengl2 with versions 5.5 and up (#16742) 2020-05-22 10:33:19 -05:00
Rob Latham
ed037edd26
prrte uses libev data structues, not libevent (#16530)
* use libevent not libev

* Add Ralph Castain as a maintainer
2020-05-22 10:31:10 -05:00
noguchi-k
d51635e6bd
ffr: add flag to use fixed format in which the length of one line of the source code is 255 when building with Fujitsu compiler. (#16737)
* ffr: add flag to use fixed format in which the length of one line of the source code is 255 when building with Fujitsu compiler.

* ffr: changed to elif.
2020-05-22 10:28:57 -05:00
Carlos Bederián
1d936a8cc6
julia: Fix LLVM build failing with newer versions of CMake (#16738) 2020-05-22 10:24:54 -05:00
Justin S
d2d35f80d1
fraggenescan: new package at v1.31 (#16587)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-22 17:17:43 +02:00
Seth R. Johnson
c9df2dea95
IWYU: update include-what-you-use version (#16760) 2020-05-22 08:55:29 -05:00
Mathias Anselmann
c6d7405009
superlu-dist: added v6.2.0 and v6.3.1 (#16704) 2020-05-22 14:58:53 +02:00
Carlos Bederián
0581e6abb3
julia: added v1.4.1 (#16739) 2020-05-22 13:56:35 +02:00
Justin S
407f1bdb92
genometools: require cairo pdf backend (#16753) 2020-05-22 13:49:50 +02:00
Cody Balos
f6bef306ec
sundials: added v5.2.0 and v5.3.0 (#16752) 2020-05-22 13:39:57 +02:00
Toyohisa Kameyama
75b0d0b145
charmpp: added support to Fujitsu compilers. (#16756) 2020-05-22 13:31:31 +02:00
Tomoki, Karatsu
a9b64bcaf1
autotools: delete args from postdep objects when %fj (#16274) 2020-05-21 20:50:57 +02:00
Amjad Kotobi
661832a6c6
r-boruta: new package at v7.0.0 (#16746) 2020-05-21 17:52:55 +02:00
Amjad Kotobi
7d55b88c43
r-caracas: new package at v1.0.0 (#16748) 2020-05-21 17:48:58 +02:00
Cameron Stanavige
6445c2e807
unifyfs: update gotcha dependency version (#16736)
The dev branch of UnifyFS now depends on the latest release of
GOTCHA, and will future releases.

This updates our spackage to depend on the correct version of GOTCHA
depending on the version of UnifyFS being installed.
2020-05-20 22:35:22 -05:00