Commit graph

4687 commits

Author SHA1 Message Date
Erik Schnetter
ef1f441424 Julia: Add version 0.5.0 (#1809) 2016-09-20 12:40:58 -07:00
Adam J. Stewart
db483e77e4 Remove url_for_version as it breaks spack info (#1503) 2016-09-20 10:17:51 -07:00
Joseph Ciurej
7f9e89eb53 Update Package: Git-LFS (#1769)
* Fixed a few small bugs in the 'git-lfs' install script.

* Fixed a bug in the '(go|go-bootstrap)@1.4.2+test' install scripts.

* Fixing a minor style issue in the 'git-lfs' install script.
2016-09-20 10:08:25 -07:00
Erik Schnetter
00bac8f294 PETSc: Explicitly point to cpp when configuring (#1807)
I encountered an HPC system where PETSc's configure stage does not find a valid `cpp` (C preprocessor). Explicitly pointing to Spack's `cpp` wrapper resolves the problem.
2016-09-20 10:05:57 -07:00
Adam J. Stewart
f180d748be Remove lingering boilerplate FIXMEs (#1756) 2016-09-20 08:01:55 -07:00
Massimiliano Culpo
eb8a0ef75e fix : failing unit tests due to missing self (#1806) 2016-09-20 07:47:13 -07:00
Joseph Ciurej
2cbae1d691 Update Package: Metis (#1783)
* Fixed a bug that was causing post-install METIS tests to fail.

* Improved the patching procedure used in the 'metis' install script.

* Enabled patch skipping for the 'metis' and 'parmetis' packages.

* Fixed some minor style issues in the 'parmetis' package.

* Improved the 'metis' test fix and added 'run_tests' support.
2016-09-20 02:48:31 -07:00
Robert D. French
5c11fe88df Add UberFTP utility (#1780) 2016-09-20 02:47:10 -07:00
Denis Davydov
1565a643bd dealii: add 8.4.2 (#1782) 2016-09-20 02:46:57 -07:00
Bruno Turcksin
20fcd3f1dd Add Python support to gdb. (#1790) 2016-09-20 02:46:30 -07:00
Joseph Ciurej
e73a7c80bf Update Package : Zoltan (#1793)
* Refactored and reorganized the 'zoltan' install script.

* Fixed a few bugs with the '+mpi' and '+fortan' variants of 'zoltan'.

* Reintroduced and improved the '+shared' variant for the 'zoltan' package.

* Improved compatibility with different MPI providers for 'zoltan'.
2016-09-20 02:46:13 -07:00
Eric
c9fe2cd469 Fix format string (in class RemoveFailedError) (#1803) 2016-09-20 02:27:35 -07:00
Tom Merrick
d71f8dcab5 samtools could not find the ncurses library (#1785) 2016-09-20 02:27:19 -07:00
Massimiliano Culpo
ea446c0f0e lmod : added support for the creation of hierarchical lua module files (#1723)
Includes :
- treatment of a generic hierarchy (i.e. lapack + mpi + compiler)
- possibility to specify which compilers are to be considered Core
- correct treatment of the 'family' directive
- unit tests for most new features
2016-09-20 02:26:25 -07:00
Eric
efadc0e299 Allow multi-user installations (#1804)
When re-using previously downloaded tarballs, spack copies from
`var/spack/stage/PACKAGE-VERSION-HASH/downloaded_file` to
`var/spack/cache/PACKAGE/downloaded_file`. This fails if the source is owned by
a different user (`shutil.copy` tries to retain all meta data including file
ownership). Change to a non-meta-data copy function (`shutil.copyfile`).
2016-09-20 02:18:26 -07:00
Erik Schnetter
bd6aac3102 Update Julia to 0.4.7 (#1805) 2016-09-20 02:16:25 -07:00
Erik Schnetter
bddb15ef4c Make VisIt build again (#1762)
- add new version 2.10.3
- explicitly require hdf5 variant ~mpi, since we don't know how to build with mpicc
- explicitly disable glew since it may not be installed
2016-09-20 02:15:58 -07:00
Erik Schnetter
70424b511e Work around cmake problems in VTK (#1761)
The cmake scripts can't handle the semicolons in gcc's version output. Filter them out before detecting the version.
2016-09-20 02:15:37 -07:00
Erik Schnetter
2a558e9d7a Tighten HDF5 version requirements for Silo (#1760) 2016-09-20 02:14:55 -07:00
Erik Schnetter
8426b65592 Make cmake @2.8 build again (#1759) 2016-09-20 02:14:37 -07:00
Erik Schnetter
140f1773cf Update hwloc to 1.11.4 (#1752) 2016-09-20 02:14:17 -07:00
Erik Schnetter
682ac5194e Declare py-beautifulsoup4's dependency on py-setuptools (#1748) 2016-09-20 02:14:06 -07:00
Erik Schnetter
48c87da07b Update curl to 7.50.3 (#1747)
* Update curl to 7.50.2
* Update curl to 7.50.3
2016-09-20 02:13:54 -07:00
Erik Schnetter
bbdc429db3 Update OpenMPI to 2.0.1 (#1721) 2016-09-20 02:13:40 -07:00
Erik Schnetter
2e490050f6 Update OpenBLAS to 0.2.19 (#1702) 2016-09-20 02:13:25 -07:00
Erik Schnetter
ebde2a101e Reorder versions in openssl (#1601) 2016-09-20 02:13:14 -07:00
Erik Schnetter
ee2ddaa7cc Update mbedtls to 2.3.0 (#1600) 2016-09-20 02:13:03 -07:00
Erik Schnetter
6848752fed Update cereal to 1.2.1 (#1599) 2016-09-20 02:12:52 -07:00
Erik Schnetter
dfad4a0abc Update binutils to 2.27 (#1598) 2016-09-20 02:12:40 -07:00
Michael Kuhn
7043fff807 Fix location -p and -P (#1776) 2016-09-15 10:48:28 +08:00
Michael Kuhn
7fd44a983d Update mvapich2 to 2.2 (#1775) 2016-09-15 10:42:57 +08:00
Erik Schnetter
6117ef44e4 Make libstdc++-detection work on Darwin (#1778) 2016-09-15 10:42:14 +08:00
Elizabeth Fischer
2a823fbdfd [RtM] Added py-proj/package.py (RtM = Ready to Merge) (#717)
* Added py-proj package

* Added bug-fix patched version to the package.

* Removed dependency of py-proj on proj.

* py-proj: Added missing dependency

* py-proj: Removed versions from forked repos, now that necessary bug fixes have been merged into the main repo.

* Update package.py

Added a blank line that Travis wanted.

* 1. Added copyright
2. Used setup_py
3. Added type='build' for dependencies.
2016-09-15 10:35:57 +08:00
Elizabeth Fischer
a954d0976a Put back full-length URL. 2016-09-14 16:52:33 -04:00
Elizabeth Fischer
595ec7e034 Bug fix capturing which packages work with which binutils. 2016-09-14 16:50:17 -04:00
Elizabeth Fischer
4a1df7e0b2 Resolved issues of py-pillow, py-scipy and binutils dependencies. Resolves #1506
py-pillow: Remove version dependency on binutils@2.25.  In tests, it works just fine with binutils@2.26.

Fixed flake8 issues.
2016-09-14 10:56:08 -04:00
Erik Schnetter
1d09d1a4e2 Update netlib-lapack to 3.6.1 (#1597) 2016-09-09 13:50:37 -07:00
Erik Schnetter
567d67fae2 Add libiconv dependency for git (#1468)
Also remove "--without-pcre" flag that git does not understand any more.
2016-09-09 12:57:49 -07:00
Erik Schnetter
8249108cc6 Qthreads: Switch back to using tarball to get released version (#1739)
* Qthreads: Switch back to using tarball for download

* Don't require autotools any more

* Re-enable autotools

* Remove autotools again

* Use .tar.bz tarball; remove outdated code
2016-09-09 06:56:11 -07:00
Erik Schnetter
e06a0271a4 New package h5hut (#1737)
* New package h5hut -- High-Performance I/O Library for Particle-based Simulations

* Set up MPI compilers

* Add version 1.8.12 to HDF5

* Correct Sphinx error
2016-09-08 13:27:47 -07:00
Erik Schnetter
ff7c0335ff Declare fontconfig dependency on pkg-config (#1686) 2016-09-08 12:15:42 -07:00
Todd Gamblin
3d3d65f3f7 Merge pull request #1553 from adamjstewart/fixes/netcdf-hdf5
Fix NetCDF/HDF5 dependency resolution problems
2016-09-08 11:58:46 -07:00
Adam J. Stewart
a22f5d8d86 Don't overwrite PYTHONPATH in docs Makefile (#1693) 2016-09-08 09:02:56 -07:00
Adam J. Stewart
06d8a3ad23 Add missing dependency for run-doc-tests (#1691) 2016-09-08 09:02:38 -07:00
Adam J. Stewart
0586b388df Add latest version of libpng, ncview depends on libpng (#1502)
* Add latest version of libpng

* ncview depends on libpng
2016-09-08 09:02:10 -07:00
scheibelp
fd02a140c4 Fix fetching non-expanded resources from mirrors (#1310)
This closes #1308, where fetching a non-expanded resource from a mirror
will cause an error.

This also ensures that when a URL resource is fetched from a mirror,
that it will be named as though it were retrieved from the original
URL. This is particularly useful for non-expanded resources since it
ensures that the resource name is consistent for the installation
(this is less important for expanded resources because the build takes
place inside the expanded resource).
2016-09-07 07:02:24 -07:00
Ian Lee
d55b17dd65 Fixed broken link in README (#1733) 2016-09-06 14:52:44 -07:00
Ben Boeckel
77611913c6 qt: only pass -qt-xcb on non-OS X 2016-09-06 16:53:38 -04:00
Ben Boeckel
112122bc28 qt: progress on qt5.5 on osx
Qt5.5 searches for the SDK itself and just ignores environment variables
like CC and CXX, skipping the spack wrappers.
2016-09-06 16:01:16 -04:00
Ben Boeckel
fca26c0b79 qt: make -no-phonon specific to qt4 2016-09-06 16:00:22 -04:00