Commit graph

8647 commits

Author SHA1 Message Date
Chuck Atkins
052b62153e
ecp-io-sdk: add UnifyFS and VeloC (#12486)
* ecp-io-sdk: Update UnifyFS

* ecp-io-sdk: Enable VeloC
2019-08-23 14:14:11 -04:00
Sinan
f199b2d42e new package: py-blinker (#12531) 2019-08-23 11:03:16 -05:00
Sinan
e8f0e6936c new package: py-path-py (#12534) 2019-08-23 10:49:14 -05:00
Hironori-Yamaji
00bb6a0b37 openstf: new package (#12538) 2019-08-23 10:40:09 -05:00
Sinan
dd8efee17e new package: py-simplekml (#12541)
* new package: py-simplekml

* add python dependency version info
2019-08-23 10:33:54 -05:00
Sinan
54d561a443 new package: py-pytailf (#12542) 2019-08-23 10:32:50 -05:00
Sinan
74ad9ff70c new package: py-termcolor (#12544) 2019-08-23 10:31:49 -05:00
Valentin Clement (バレンタイン クレメン)
edae707b9c Add version 2.0 (#12545) 2019-08-23 10:30:39 -05:00
Phil Carns
a707c5bd2b libfabric package: add kdreg variant (off by default) (#12521)
This variant (off by default) adds support for the kdreg option in
the GNI provider. It is disabled by default in order to avoid
potential runtime conflicts with the cray-mpich library. Only one
library at a time can use this feature.

This patch allows the libfabric package to work correctly out of
the box on systems like Cori at NERSC (since it's CLE7 update).
Otherwise the spack build may autodetect kdreg headers on the system
and enable this problematic feature.
2019-08-22 17:02:56 -07:00
Jennifer Herting
21f2a1ef83 py-cloudpickle package: add version 1.2.1 (#12518) 2019-08-22 16:56:47 -07:00
Greg
d5c3cc0a85 esmf: add v7.1.0r, with a gcc patch for macOS (#12509) 2019-08-22 16:55:56 -07:00
Sinan
0e907326f5 New package: py-multi-key-dict (#12508) 2019-08-22 16:55:11 -07:00
Hironori-Yamaji
3607aa486f New package: EEM (#12321) 2019-08-22 16:05:22 -07:00
Axel Huebl
7b2470236e nlohmann-json: v3.7.0 (#12517)
* nlohmann-json: 3.7.0

The version 3.6.0 fix compile issues with GCC 9.0.

* nlohmann-json: proper test handling

tests are controlled via `spack install --test root|all ...`
instead of a variant.
2019-08-22 20:32:06 +02:00
Tamara Dahlgren
c9e214f6d3 Spack BundlePackage: a group of other packages (#11981)
This adds a special package type to Spack which is used to aggregate
a set of packages that a user might commonly install together; it
does not include any source code itself and does not require a
download URL like other Spack packages. It may include an 'install'
method to generate scripts, and Spack will run post-install hooks
(including module generation).

* Add new BundlePackage type
* Update the Xsdk package to be a BundlePackage and remove the
  'install' method (previously it had a noop install method)
* "spack create --template" now takes "bundle" as an option
* Rename cmd_create_repo fixture to "mock_test_repo" and relocate it
  to shared pytest fixtures
* Add unit tests for BundlePackage behavior
2019-08-22 11:08:23 -07:00
Omar Padron
47238b9714 new package: libglvnd (#12183)
* new package: libglvnd

* remove virtual provides from libglvnd

libglvnd does not provide them directly, but
through implementations that depend on it.

* fix flake8 errors

* libglvnd: fix style/remove unecessary variants

* remove older libglvnd version

* explicitly enable all libglvnd stubs

* libglvnd: conflict with non-linux platform
2019-08-22 14:08:07 -04:00
Satish Balay
892a552495
petsc: update url to gitlab (#12506) 2019-08-22 12:40:47 -05:00
Derick Huth
fadba727d3 Chill package: build fixes (#12249)
* Specify rose/boost dependencies separately
* Replace custom bootstrap phase with autoreconf phase and fix typo
  when locating bash exe
* Add bison/flex dependencies
* Fix configure args typo
2019-08-21 18:39:06 -07:00
Jon Rood
1b8e0c36cb Percept package: add version (#12434)
* Choose a specific commit as a version (before, the only version was
  the master branch)
* Add CMake patch which allows for building the version added here
  (this replaces the existing patches for percept in Spack)
* Update trilinos dependency
2019-08-21 18:00:41 -07:00
Axel Huebl
7770372100 New package: c-blosc2 (#12430) 2019-08-21 17:52:05 -07:00
Sinan81
63f5054140 new package: py-grequests 2019-08-21 17:50:17 -07:00
liuyangzhuan
7303b6cdc9 ButterflyPACK package: add URL, versions 1.0.0 and 1.0.1 (#12428) 2019-08-21 17:23:18 -07:00
Mark Olesen
e47b65a2a7 Remove package: of-adios-write (#12443)
old (adios1) integration is not supported, maintained, or recommended
for openfoam. The of-adios-write package serves no purpose any more.
2019-08-21 17:14:13 -07:00
Sinan81@github
9ae6a07fe8 new package: py-empy 2019-08-21 17:07:08 -07:00
Sinan
be302cac1f New package: py-fallocate (#12450) 2019-08-21 16:51:25 -07:00
Sinan81
82080f0bc9 new package: Exiv2 2019-08-21 16:47:13 -07:00
Mark Olesen
bec358941d re2c package: add version 1.2.1 (#12455) 2019-08-21 16:45:19 -07:00
Pariksheet Nanda
105da8de02 py-deeptools: add 3.3.0 (#12456)
Also update dependencies to build latest py-deeptools versions and
add a patch to run tests:

* Replace pypi URL with github URL to download tests
* Update dependency versions of py-pysam, py-matplotlib
* Add new py-deeptoolsintervals package as a dependency
* Add py-plotly and py-nose dependencies
* Patch setup.py to collect and run tests
2019-08-21 16:43:44 -07:00
Mark W. Krentel
918da9aa55 hpcviewer: add version 2019.08 2019-08-21 16:30:15 -07:00
Sinan
886ecb97e3 New package: py-fortranformat (#12459) 2019-08-21 16:24:34 -07:00
Sinan81
d8d506e39a new package: py-geoalchemy2 2019-08-21 16:22:34 -07:00
Sinan
f1b377b3d5 New package: libsecret (#12461) 2019-08-21 16:20:26 -07:00
Sinan
fd6485efac new package: py-mechanize (#12468) 2019-08-21 16:17:51 -07:00
Sinan81
17ee9c7229 new package: QtKeychain 2019-08-21 16:12:33 -07:00
Sinan81
08e389cb7d new package: py-humanize 2019-08-21 16:10:51 -07:00
Chuck Atkins
77e4e3d87e
mercury: Fix CMake 3.15 configure error (#12504) 2019-08-21 13:28:20 -04:00
Jeffrey Salmond
a41014ed9e mvapich2 depends on slurm when built with process_managers=slurm (#12489) 2019-08-20 16:43:28 -05:00
Daryl W. Grunau
dbbccd1303 prefix -> self.prefix (#12487) 2019-08-20 16:41:41 -05:00
Cameron Stanavige
11c0a7882d UnifyFS: new package - rename from UnifyCR (#12439)
UnifyCR has been renamed to UnifyFS. Renaming the Spack package is
the last step in this process.

This renames the package and changes any UnifyCRs to UnifyFS within
the package.
2019-08-20 11:13:22 -05:00
Ryan S. Elliott
7737d623b0 kim-api: added version 2.1.3 (#12457) 2019-08-20 16:29:17 +02:00
Teodor Nikolov
118e20a087 Add Kokkos 2.9.0 (#12466) 2019-08-20 13:07:11 +02:00
健美猞猁
6d959494d4 r: added version 3.6.1. (#12470) 2019-08-20 11:13:18 +02:00
Pariksheet Nanda
64de824cf6 py-pyfaidx: tweak dependencies; fixes #12445 (#12446)
* py-pyfaidx: tweak dependencies; fixes #12445

* py-pyfaidx: add suggestions for #12446
2019-08-16 22:41:32 -05:00
Dan Lipsa
39ad0efb9a Solve compilation error on summit. (#12305)
* This constexpr does not compile on summit.

I tried gcc6.4 and gcc7.4

* Add link the the llvm bug report.
2019-08-16 15:27:35 -04:00
Frédéric Simonis
7bb08b6ecb preCICE: Fix Eigen include directory (#12441) 2019-08-16 09:00:01 -05:00
Sinan
46e8de914a new package: laszip (#12432) 2019-08-15 19:07:40 -05:00
Pariksheet Nanda
862b3b00df camx: add version 6.50 (#12437)
* camx: add version 6.50

* camx: remove unpredictable download URL

* camx: install manual and data files
2019-08-15 19:07:22 -05:00
Adam J. Stewart
f568f19b13
Overhaul PyTorch package (#12420)
* Overhaul PyTorch package

* Flake8

* Distributed requires MPI, NCCL not specified correctly

* Binary was being specified incorrectly

* Run tests at install time

* Disable GLOO in addition to GLOO_IBVERBS
2019-08-15 17:54:09 -05:00
Mark W. Krentel
3a78f0e0fd hpctoolkit: add version 2019.08.14 (#12435)
Add version 2019.08.14 and rename 'develop' to 'master' to match the
git branch name (now that master is also a special name).
2019-08-15 17:53:41 -05:00
Michael Kuhn
0cdcee92fb go: Add 1.12.8 and 1.11.13 (#12433)
Both address security issues:
https://groups.google.com/forum/#!topic/golang-nuts/fCQWxqxP8aA
2019-08-15 17:01:43 -05:00