* Update the krell institute products to use the latest features of spack for building on cluster platforms.
* Address travis error messages and resubmit the pull request.
* Update the contents of openspeedshop package.py so it passes the flake8 tests.
* Fix flake8 error-whitespack issue in mrnet package.py file.
* Add updates based on spack reviewer feedback.
* More fixes based on comments from reviewers. Switch using extend to using append, remove additional setting of PATH and LD_LIBRARY_PATH that should not be required due to RPATH.
* More review related changes. Update MPIOption.append lines and take out xercesc references.
* Create a base options function for common openspeedshop base cmake options to reduce redundencies.
* Add libxml2+python depends on to get around issues with the libxml2 package file.
* Using boost over 1.60.0 causes compile errors. This is a known boost bug. Also, dyninst-9.2.0 is set to be the vesrion of dyninst to use with OSS, as of now. The newer version fails to build.
* Fix bad syntax in specifying the boost version range.
* Update the version numbers for the krell institute components and tools: cbtf and openspeedshop.
* Do not build glib for qt3, it is not needed and causes build problems at this time anyway.
* A fix was added for setting LD_LIBRARY_PATH in the qt3 build, but if LD_LIBRARY_PATH is not set the qt build fails. So so check and set LD_LIBRARY_PATH if not set, update if it is set.
* Update the fix for qt3 build by setting LD_LIBRARY_PATH instead of checking for whether it is set or not per Adams comment that spack clears LD_LIBRARY_PATH.
* A fix was added for setting LD_LIBRARY_PATH in the qt3 build, but if LD_LIBRARY_PATH is not set the qt build fails. So so check and set LD_LIBRARY_PATH if not set, update if it is set.
* Trim comments to fit more concisely.
* Fix tabs versus spaces and swap if and else clause check from a negative to a positive check.
* Fix issues with the cbtf-argonavis build, update to use dyninst-9.3.2, fixes to openspeedshop package build.
* Fix issues with the cbtf-argonavis package.py files related to comments.
* Add changes for changing the krell packages from Package to CMakePackage.
* Add better changes for changing the krell packages from Package to CMakePackage.
* Add more modifications for changing the krell packages from Package to CMakePackage.
* Add additional modifications for changing the krell packages from Package to CMakePackage and fixing Travis erros
* Fix new travis errors.
* Fix new travis errors.
* Add more changes for PR 4765.
* Add more refinements to the conversion from Package to CMakePackage.
* Fix new travis errors.
* Add dependencies for MPI to be passed to cbtf-krell, so it can build the MPI collectors requested by the builder of openspeedshop.
* Remove extra unnecessary routine to adjust build arguments. Fix if-else clause issue.
* Fix more flake issues caused by last changes.
* Fix a bug where openspeedshop will not build when no mpi variants are specified. Also switch to a multiple level variant for building the gui(s). Use none, qt3, and qt4 as the variants with qt3 being the default.
* Add fix for spack issue #4843, where LTDL include files were not found.
* Add the build_type variant back into the openspeedshop package file.
* Add new package for the Argo Navis/Krell new graphical user support library: QtGraph.
* Revert "Add new package for the Argo Navis/Krell new graphical user support library: QtGraph."
This reverts commit f8883de446c404e46d4c33fe497ae1e9ab2f04a6.
* Add new package for the Argo Navis/Krell new graphical user support library: qtgraph.
* Fix flake8 errors.
* Fix flake8 errors.
* Fix flake8 errors.
* Fix flake8 errors.
* Fix flake8 errors.
* Add changes to support QMakePackage class instead of Package class for qtgraph.
* Update change for suggested reviewer improvements.
* Fix flake8 errors.
* Fix flake8 errors.
* new package: VPFFT
* install readme and license
* misc
* changed version name to 'develop'
* removed the misplaced package file
* updated eigen path, fixed docstring, and updated 'docs' installation method
* pep8 compliant, changed installation of docs
IceT places its CMake module in the wrong directory,
which is not included in the default CMake search paths.
This fixes it for *directly* depending packages without the
need to add
```yaml
icet:
environment:
prepend_path:
CMAKE_PREFIX_PATH: '${PREFIX}/lib'
```
to the `modules.yaml` as a workaround.
* Molcas 8.2: Adding molcas spec file
* Molcas 8.2: Putting in patch file for molcas driver not to be installed in spack stage directory
* Molcas making changes
* Making changes in ordering
* transabyss: new package and dependencies
* fixed build deps in igraph and version conflict spec in abyss
* fixed versioning stuff and package structure
* fixed dep type
* fixing dep type for real this time
Build system "usually" autodetects mpi library but this is
not the case on many platforms. Provide mpi library name/version
as part for configure args.
* savanna: explicitly adding variant sz to adios since it is no longer enabled by default in adios
* savanna: removing +sz from adios as sz is now enabled in adios by default
* savanna: explicitly specifying adios variants required by savanna
* adios: conform to pep8
* adios: added versions 1.11.0 and 1.12.0
* adios: added variant no_mpi to explicitly disable mpi support
* adios: add new variant mxml
adios v1.12.0 onwards contains an xml library built within.
To build with an external mxml, a new variant must be used
* adios: new variant for sz transform
* adios: flexpath and dataspaces staging variants
Two new variants for staging: flexpath and dataspaces.
New variant 'staging' that will enable both
* adios: dependency on libtool:2.4.2 since adios does not build with newer libtool 2.4.6
* adios: better description for variant no-mpi
* adios: new variant for netcdf
as requested by @mamelara from LBL
* adios: renamed variant 'no_mpi' to 'serial'
* adios: removed variant mxml
* adios: corrected implementation of the mpi dependency, along with its relation with the 'serial' variant
Added conflicts between 'serial' and other variants
* adios: added 'else' clause when variants are not added
* adios: replaced variant 'serial' with 'mpi'
* adios: Added configure option to explicitly disable variants that are not enabled.
* adios: setting default zfp to true
* adios: fixed flake8 errors
* adios: removed some old comments
* adios: setting default sz to False.
It is recommended to set default to False when dependency is on develop (sz@develop).
* adios: removing dependency on develop for sz and setting default sz to true
* adios: updated url to latest release.
Just keeping it clean
* new package:SNAP
* removed boilerplate
* Delete .nfs00000000003a8b1700001358
* install another executable in bin and install readme
* added quotes around README.md
* moved readme to prefix
* Added a package for the MDAnalysis toolkit.
* Added a patch that allows Elemental to use cuBLAS internally.
* Added support for LBANN to use the new cuBLAS extension in Elemental.
* Added a proper variant for when LBANN does not want to use cuBLAS in
elemental.
* Added a package for the cnpy project and used it in the lbann package.
* Removed unnecessary comment lines.
* Removed blank lines
* Removed debug variant
* Add support for libjpeg-turbo
* Added additional variants for OpenCV features. Fixed bug when linking
in TIFF support, where libtiff used the regular JPEG library and
OpenCV used libjpeg-turbo. Now libtiff can use libjpeg-turbo.
* Removed the variant for getting Elemental to use the cublas variant.
Updated the requirements for OpenCV to add new options.
* Fixed a flake8 error in OpenCV and added a path to find cnpy in lbann.
* Fixed line too long flake8 error.
* Added a flag to specify the datatype size in lbann and fixed a flake8 error.
* Added a debug build variant using hte new build_type
* Fixed flake8
* Fixed how the debug build is pushed to Elemental
* Fixed a bug in the Elemental package where the blas search flags were
being overridden by the blas link flags. Changed how the sequential
initialization variant is implemented in LBANN.
* Added support via a variant to explicitly use mkl or openblas. This
helps work around variant forwarding problems.
* Updated package files to address pull request comments.
* new package: cns-nospec
* made changes as suggested and added proxy-app tag
* updated edit()
* adjusted logic for '+debug'
* install readme and license
* install readme and license
* new package: SMC
* removed template and added proxy-app tag
* added comp variant in edit()
* edited comp variant in edit()
* move executable and input file into bin and install readme and license
Fixes#4898
Constraints that were supposed to be conditionally activated for
specified values of a single-valued variant were being activated
unconditionally in the case that the variant was associated with
an implicit dependency. For example if X->Y->Z and Y places a
conditional constraint on Z for a given single-valued variant on
Y, then it would have been applied unconditionally when
concretizing X.
Earlier versions of boost had a fixed maximum number of jobs. 1.54
was 64, it bumped once or twice afterwards and in 1.59 [this
commit][commit] it became dynamic.
I need 1.54 for as a prereq for bcl2fastq but I can't build 1.54 on my
144 core build box.
This fixes that.
[commit]: 316e26ca71
* Fix cdefs macro to be compatible with gcc 4.8.x
See the discussion in #4945 (after the merge) for additional
background.
libbsd builds with gcc@5.4.0 on CentOS 7, but not with the system's
gcc@4.8.5. Others have reported problems with gcc@4.8.3 on Fedora 19.
The problem boils down to the lack of support for the clang extension
`__has_include_next`. The immediate symptom seems to be the
pre-processor using defining macro like this
```
```
then then tripping over an expansion of it like this:
```
blah.h:13:23: error: missing binary operator before token "("
```
This patch changes the macro definition to:
```
```
which swallows the arguments with which the macro is invoked.
The end result is that libbsd builds for me on CentOS 7 using the
system compiler.
* Apply this patch for any compiler version before 5
This includes subversions of 4, like 4.8.5.
* chlorop: new package
* chlorop: moving main script to bin and moving runtime tmp location.
* chlorop: fixing flake8 error.
* chlorop: cleaning up, removing CHLOROTMP, advising user to set it.
* chlorop: removing unused import
Adds ADIOS2, the C++ Exascale HPC I/O rewrite of ORNL's ADIOS
library.
Currently, many variants (especially for data transforms such as
compression) are not yet added. It already provides Python bindings.
* Changed every 'fpic' variant to 'pic'. fixes#2463
Every variant that activates compilation of position independent code
has been changed to 'pic'. Hardcoded compiler flags in packages have
been substituted with `self.compiler.pic_flag`.
* Changed literal uses of '-fpic' to 'self.compiler.pic_flag'
* Add a QMakePackage base class
* Fix sqlite linking bug in qt-creator
* Add latest version of qt-creator
* Add latest version of qwt
* Use raw strings for regular expressions
* Increase minimum required version of qt
* Add comment about specific version of sqlite required
* Fixes for latest version of qwt and qt-creator
* Older versions of Qwt only work with older versions of Qt
