Commit graph

18010 commits

Author SHA1 Message Date
Michael Kuhn
aa14a0aec7
graphviz: fix implicit patch (#19621)
The patch seems to be included in version 2.44.1 already. Moreover, it
is necessary to specify `level=0` to make it apply.
2020-10-30 10:16:40 +01:00
Peter Scheibel
3a863020f0
CI: disable vermin check for deprecated hash (#19612)
Spack has a fallback for hash checking with m55sums that may not be
supported in earlier versions of Python 3.x. The comments in the
Spack code acknowledge that this is best effort and may fail, but
recent vermin checks (running as part of our CI) reject this. This
disables vermin checks for that fallback.
2020-10-29 22:23:36 -07:00
t-nojiri
52379d87fe
caliper: Fix for aarch64 (#19564) 2020-10-29 22:01:05 -05:00
Chris Chambreau
ebe1c6badd
mpip: add v3.5 release (#19559)
* Update for mpip-3.5 release

* Additional changes to support 3.5 and 3.4.1 releases

* Specify python deptype
2020-10-29 16:56:54 -07:00
Frank Willmore
c954d50998
Oneapi add compiler (#19330)
* enable flatcc to be built with gcc/9.X.X

* add static option for building libyogrt

* cleanup

* Initial working version

* rework new oneapi wrappers

* tested and removed my initials from source

* cleanup

* Update __init__.py

* remove whitespace

* working now with mods for testing, detection. Detection for oneapi is working, but entry needs to be modified to add link path for libimf.so. Cleared cruft for old Intel versions

* fixed some formatting

* cleanup

* flake8 cleanup

* flake8

* fixed syntax of compiler version detection tests

* fixed syntax of compiler version detection tests

	modified:   detection.py

* fix typo

* fixes for compilers tests

* remove erroneous tests for outdated -std= flags, remove ifx version check (output won't parse)

Co-authored-by: Frank Willmore <willmore@anl.gov>
2020-10-29 16:52:54 -05:00
Jean-Paul Pelteret
52959528a2
Suite-sparse: Fix Darwin install name (#19507) 2020-10-29 15:29:39 -05:00
Geoffrey Oxberry
af057e0196
yapf: add version 0.30.0 (#19598) 2020-10-29 14:14:55 -05:00
Ben Corbett
305d8d9b1b
Adds a package for LvArray (#19221)
* RAJA and CHAI changes.

* Added LvArray package.
2020-10-29 13:52:10 -05:00
David Beckingsale
e2a720930a
Patch CMake version check in Umpire (#19590)
* Patch CMake version check in Umpire

* Update version constraint for cmake_version_check patch

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add maintainers to Umpire

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-29 11:32:56 -07:00
Jen Herting
518124c14a
[py-torch-nvidia-apex] added version 201019 and added dependency on p… (#19548)
* [py-torch-nvidia-apex] added version 201019 and added dependency on py-pybind11

* [py-torch-nvidia-apex] changed versioning format

* [py-torch-nvidia-apex] removed redundent version condition

* [py-torch-nvidia-apex] removed condition on dependency
2020-10-29 11:20:18 -05:00
Jen Herting
0fc79293c6
New package: py-cupy (#19468)
* [py-cupy] created template

* [py-cupy] added dependencies

* [py-cupy] switched to git based download for submodules

* [py-cupy] added dependencies

* [py-cupy] added homepage and description. removed fixmes

* [py-cupy] updated to tarball from pypi
2020-10-29 11:17:14 -05:00
h-denpo
c2e6610948
plplot:fix: add: depends_on('libsm', type='link') (#19594) 2020-10-29 11:10:57 -05:00
Rémi Lacroix
a4a64e1fbd
Gromacs: Remove a dependency that could never be enabled. (#19599)
The `fft` variant was removed but not the associated dependency.
2020-10-29 11:08:13 -05:00
Greg Becker
71cb46afde
clingo+python extends python (#19585) 2020-10-29 10:38:17 -05:00
AMD Toolchain Support
09b63ae3d1
Adding AOCC support for M4 (#19572)
* Adding AOCC support for M4

* combining 4 if-statements into a single if-statement with or conditions

* keeping parentheses around the or expressions

* fixing flake8 test failures

Co-authored-by: mohan babu <mohbabul@amd.com>
2020-10-29 10:13:30 -05:00
G-Ragghianti
0bed9a1990
SLATE package: New versions of slate, blaspp, and lapackpp with CMake build support (#19587)
* New versions of slate, blaspp, and lapackpp with CMake build support

* Fixing formatting
2020-10-29 10:13:02 -05:00
t-nojiri
ad87eece17
launchmon: Fix for aarch64 (#19562) 2020-10-28 21:11:36 -05:00
Seth R. Johnson
ef9c80de23
qt: Silence build and force xmlpatterns library on for Qt4 (#19591)
For some mysterious reason Qt4 stopped building the xmlpatterns
component, needed by some downstream packages. With this patch, the
component successfully builds with
```
qt@4.8.7~dbus~debug~examples~framework~gtk~opengl~phonon+shared~sql~ssl~tools~webkit freetype=none arch=linux-rhel7-haswell %gcc@10.2.0
```
2020-10-28 20:47:16 -05:00
manifest
f7269ffd0a
pest suit + (#19458)
* pestpp +

* build -f default
2020-10-28 20:46:04 -05:00
manifest
b4a0a43d98
PopLDdecay package + (#17802)
* poplddecay bio

* flake8 debug

* bin PATH correction

* build step opt

* BUILD_PATH fix

* retro implementation + style fix
2020-10-28 20:45:24 -05:00
manifest
3243e904a8
Pbbam debug (#17803)
* pbbam path fix

* pbbam flake8 fix

* sys var build_directory sub

* pbbam flake8 fix
2020-10-28 20:44:38 -05:00
Todd Gamblin
aebf20ebdc sbang: vendor sbang
`sbang` now lives at https://github.com/spack/sbang, and it has its own
test suite that's more extensive than what's in Spack. We'll leave sbang
tests to sbang from now on, and just vendor `bin/sbang` directly.
Remaining `sbang` tests have to do with patching files, not with
`sbang`'s functionality.

This update also fixes a bug with `sbang` and multiple command line
arguments that was introduced in #19529. See:
  * https://github.com/spack/sbang/pull/1
  * https://github.com/spack/sbang/pull/2

- [x] include latest `sbang` from https://github.com/spack/sbang
- [x] remove old `sbang` tests from Spack
- [x] update `COPYRIGHT` and `cmd/license.py`
2020-10-28 17:43:23 -07:00
David Beckingsale
44bacefb27
RAJA package: Don't set both CUDA_ARCH and CMAKE_CUDA_FLAGS (#19589) 2020-10-28 16:54:23 -07:00
dunatotatos
f028079564
Update strelka (#19565)
* Update package.py

Remove breaking patch.

Patching the shebang is useless is the dependencies are properly loaded before execution. Furthermore, the long paths which can be generated when installing with Spack can exceed the maximum length of the shebang.

* Add newer versions of strelka.
2020-10-28 10:58:30 -05:00
dunatotatos
1dd7370885
Remove unused dependency. (#19566)
Boost is not used to build Manta.
2020-10-28 10:57:19 -05:00
Toyohisa Kameyama
f320a650d8
py-mmcv: fix Opencv detection. (#19567) 2020-10-28 10:56:52 -05:00
Roberto Di Remigio
98a1771590
Do not build XCFun tests (#19568) 2020-10-28 10:56:11 -05:00
Roberto Di Remigio
f4b63db78f
Do not build MRCPP tests (#19569) 2020-10-28 10:55:46 -05:00
Roberto Di Remigio
85e6334d6f
Add new package: mrchem (#19571) 2020-10-28 10:55:19 -05:00
Dr. Christian Tacke
674fb16828
openssl: Add version 1.1.1h (#19574) 2020-10-28 10:53:33 -05:00
Pieter Ghysels
9b809e01b4
Add new minor version 1.2.1 for ButterflyPACK (#19554) 2020-10-27 20:28:24 -05:00
lorddavidiii
6a5d399f55
asciidoc-py3 add docbook dependency and fix a enviroment variable problem for docbook-{xml,xsl} (#19547)
* asciidoc-py3: add docbook-{xml,xsl} dependency

* docbook-{xsl,xml}: fix XML_CATALOG_FILES enviroment variable
2020-10-27 20:11:37 -05:00
Jen Herting
79b0eab2af
New package: libcudf (#19110)
* [libcudf] created template

* [libcudf] depends on cuda

* [libcudf] set cmake dir

* [libcudf] depends on boost

* [libcudf] depends on py-pyarrow

* [libcudf] depends on librmm

* [libcudf] depends on dlpack

* [libcudf] added more dependency information from https://github.com/rapidsai/libcudf/blob/v0.15.0/CONTRIBUTING.md#customizing-the-build

* [libcudf] removed python dependencies

* [libcudf] fixed url that got mangled in package renaming

* [libcudf] added default build options from build.sh

* [libcudf] added version 0.16.0a

* [libcudf] removed version 0.16.0a as it's an alpha version

* [libcudf] added homepage and description. removed fixmes

* [libcudf] flake8

* [libcudf] arrow requires +orc

* [libcudf] requires +parquet

* [libcudf] checksum changed
2020-10-27 20:11:06 -05:00
Jen Herting
7bd5397aca
New Package: py-rmm (#19104)
* [py-rmm] created template

* [py-rmm] added dependencies

* [py-rmm] setting build_directory

* [py-rmm] added dependencies cuda and spdlog

* [py-rmm] added homepage and description. removed fixmes

* [py-rmm] added for loop for dependency versions

* [py-rmm] flake8

* [py-rmm] updating upper range of python version

* [py-rmm] removing python upper limit
2020-10-27 20:10:40 -05:00
t-nojiri
429f49a1e4
bowtie2: Add version 2.4.2 (#19537) 2020-10-27 20:09:05 -05:00
Todd Gamblin
965ccb78cf sbang: use bashcov in sbang on Linux 2020-10-27 13:59:46 -07:00
Todd Gamblin
ec9456feb8 sbang: convert sbang script to POSIX shell
`sbang` was previously a bash script but did not need to be. This
converts it to a plain old POSIX shell script and adds some options. This
also allows us to simplify sbang shebangs to `#!/bin/sh /path/to/sbang`
instead of `#!/bin/bash /path/to/sbang`.

The new script passes shellcheck (with a few exceptions noted in the file)

- [x] `SBANG_DEBUG` env var enables printing what *would* be executed
- [x] `sbang` checks whether it has been passed an option and fails gracefully
- [x] `sbang` will now fail if it can't find a second shebang line, or if
      the second line happens to be sbang (avoid infinite loops)
- [x] add more rigorous tests for `sbang` behavior using `SBANG_DEBUG`
2020-10-27 13:59:46 -07:00
adityakavalur
9f89a7e9f7
Update package.py (#19513)
On Cori(Cray-XC40), I need to pass the entire path for the compilers, this is what is saved in c_compiler, cpp_compiler, f_compiler. Therefore, when for the MPI wrappers only the binary name is provided I run into the same issue. There is no drawback of passing the entire path, this is set by the user through the compiler path anyways.
2020-10-27 13:24:09 -05:00
Roberto Di Remigio
7313cf5ea5
Update MRCPP package.py (#19541) 2020-10-27 09:58:24 -05:00
h-denpo
78a759129a
ghostscript: fix: add: depends_on('krb5', type='link') (#19536) 2020-10-27 09:54:33 -05:00
t-nojiri
f6c51efa85
diamond: Add version 2.0.4 (#19535) 2020-10-27 09:53:38 -05:00
Jungwon Kim
64974c43c7
added -lpthread flag in kv/tests/CMakeLists.txt (#19533)
* added -lpthread flag in kv/tests/CMakeLists.txt

* Update var/spack/repos/builtin/packages/papyrus/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-27 09:53:22 -05:00
daichi-nishi
e214deec5b
modified:var/spack/repos/builtin/packages/ppopen-appl-bem-at/package.py (#19538) 2020-10-27 09:53:04 -05:00
Chuck Atkins
57200f01fd
camp: Add missing checksum (#19543) 2020-10-27 09:52:28 -05:00
Toyohisa Kameyama
bb00b1a7c9
sbang: add support for php (#18299)
PHP supports an initial shebang, but its comment syntax can't handle our 2-line
shebangs. So, we need to embed the 2nd-line shebang comment to look like a
PHP comment:

    <?php #!/path/to/php ?>

This adds patching support to the sbang hook and support for
instrumenting php shebangs.

This also patches `phar`, which is a tool used to create php packages.
`phar` itself has to add sbangs to those packages (as phar archives
apparently contain UTF-8, as well as binary blobs), and `phar` sets a
checksum based on the contents of the package.

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2020-10-26 22:11:43 -07:00
t-nojiri
cb07d9ddb1
netgauge: Fix for aarch64 (#19462)
* netgauge: Fix for aarch64

* netgauge: Revise the points indicated by the review.
2020-10-26 20:20:18 -05:00
Geoffrey Gunter
e9223062a8
New package: date (#19515)
* Add new package: date

* date: resolve style conformance issues

* date: explicitly disable some cmake options

Explicitly disable CMake options corresponding to variant
'tzdb=download'

* date: make more cmake options explicit

* date: simplify defining cmake cli args
2020-10-26 20:18:34 -05:00
Todd Gamblin
bc4e7eabfe
coverage: add bin directory to coverage (#19530) 2020-10-26 16:23:22 -07:00
iarspider
93c985e5a9
New package: py-minrpc (#19524)
* New package: py-minrpc

* Delete package.py.save

* Update var/spack/repos/builtin/packages/py-minrpc/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-26 16:20:45 -05:00
jthies
5d5711621a
packages/phist: fix incorrect git url (#19527)
Co-authored-by: Thies <thie_jo@fe-store01.sc.bs.dlr.de>
2020-10-26 16:19:53 -05:00