Commit graph

2831 commits

Author SHA1 Message Date
Adam J. Stewart
040f8a7176 Add latest version of gmp (#2695) 2016-12-30 22:53:54 -08:00
Todd Gamblin
972a277956 Fix Python issue with build failures; Add test case for build failures. (#2687) 2016-12-30 11:37:50 -08:00
Todd Gamblin
5fbab1f4b5 Concretize preserves deptypes (#2681)
Concretization preserves deptypes
2016-12-29 14:43:59 -08:00
Massimiliano Culpo
17b13b161b Directive inheritance: laziness for the win (#2623)
* inheritance of directives: using meta-classes to inject attributes coming from directives into packages + lazy directives

* _dep_types -> dependency_types
* using a meta-class to inject directives into packages
* directives are lazy

fixes #2466

* directives.py: allows for multiple inheritance. Added blank lines as suggested by @tgamblin

* directives.py: added a test for simple inheritance of directives

* Minor improvement requested by @tgamblin

CMakePackage: importing names from spack.directives
directives: wrap __new__ to respect pep8

* Refactoring requested by @tgamblin

directives: removed global variables in favor of class variables. Simplified the interface for directives (they return a callable on a package or a list of them).
2016-12-28 12:37:02 -08:00
Thierry
857dac88c8 init yorick package (#2635)
* init yorick package

* attempt at picking up SPACK's compiler choice, todo ~X variant.

* sphinx docstring error ?

* version# tarball, ~X default, docstring fix

* sphinx docstring fix(?)
2016-12-28 10:08:02 -08:00
George Hartzell
18c10f2bad Cleanup post luafilesystem version de-underscoring (#2683)
The upstream luafilesystem tarball/version had a wayward/inconsistent
underscore in their more recent version tag.  The played badly with
our package fetching machinery (due to recent changes?).

Upstream cleaned up their bit which required some touchups here.

- updated the url
- updated the version (digest)
- updated the format statement for the path to the rockspec.
2016-12-27 11:49:53 -08:00
Mayeul d'Avezac
81c1404b9c Adds catch, cppunit, spdlog, tinyxml(1 and 2), google benchmark (#2627)
* Adds catch, cppunit, spdlog, tinyxml(1 and 2), google benchmark

Tinyxml comes in two flavors, 1 and 2. Each comes in several
versions... So they cannot be easily united into a single package.

* Use CMakePackage and friends, add copyright

Also eleminate debug/release variants, since it no longuer fits in the
CMakePackage format.

* Remove unnecessary url

* spdlog now has tagged releases

* Remove unnecessary url argument

* Fewer quotes in cmake args, because magic

* Incorrect base class for tinyxml
2016-12-27 00:32:29 -08:00
Michael Kuhn
baaa613e44 Update wx to 3.1.0 (#2641) 2016-12-27 00:18:26 -08:00
Adam J. Stewart
29bac34c1d Ensure that every file in Spack has a license (#2659)
* Ensure that every package has a license

Also fixes URLs with http://http:// doubled.

This is a continuation of #2656.

* Add license to every file in Spack

* Make sure Todd is the author of all packages

* Fix flake8 tests

* Don't license external Sphinx docs

* Don't display licenses in tutorial example packages

Also fixes typos and converts command-line examples
from tcsh to bash, which is more common
2016-12-27 00:17:12 -08:00
Matthew Scott Krafczyk
3e92ffde7d Update py-cython with new pypi.io url and new version (#2650) 2016-12-25 19:48:11 -08:00
Bruno Turcksin
e16908b16b Add 64 bit variant to dealii. (#2654) 2016-12-25 18:55:14 -08:00
Adam J. Stewart
b240fdb2b9 Add latest version of Python 2 (#2668) 2016-12-25 18:53:16 -08:00
Michael Kuhn
33592d0142 Update gcc to 6.3.0 (#2669) 2016-12-25 18:52:58 -08:00
George Hartzell
041f96b349 Update the texlive distro digest. (#2679)
sigh.
2016-12-25 12:37:03 -08:00
Massimiliano Culpo
8fe5fb7988 go: fixed GOROOT_BOOTSTRAP without workarounds (#2671) 2016-12-25 12:33:57 -08:00
Michael Kuhn
e340f275b8 Update cairo to 1.14.8, gtkplus to 2.24.31 and pango to 1.40.3 (#2642) 2016-12-21 15:03:28 -08:00
Kim Serradell
70a4c4e105 Bug fontconfig (#2652)
* Added uuid: OSSP uuid is a ISO-C:1999 application programming interface

* Fixed install error in cmor package

* Added uuid: OSSP uuid is a ISO-C:1999 application programming interface

* Fixed install error in cmor package

* Modifiying fontconfig file to allow install in OpenSuse 13.2

* Adding pkg-config dependency to freetype and libxml2

* Removed first possible solution. With @adamjstewart selecting the one adding pkg-config to dependencies
2016-12-21 14:27:15 -08:00
Federico Padua
60dc751225 Fix homepage for the package libspatialindex (#2656)
Small fix for the homepage of the package libspatialindex.
2016-12-21 14:23:32 -08:00
Michael Kuhn
3ce3165ae6 Update gdal to 2.1.2 (#2643) 2016-12-19 17:06:57 -08:00
Adam J. Stewart
b3ba45afa9 Various improvements to H5hut (#2636) 2016-12-19 17:06:14 -08:00
Andrey Prokopenko
d306893d83 moab: changed trilinos dependency to zoltan, and added fortran variant (#2582)
Trilinos dependency is very heavy, the zoltan one is light. I'm not sure
if there is a situation where one needs the former.
2016-12-19 14:41:09 -08:00
Adam J. Stewart
d24186ea84 Update PnetCDF to AutotoolsPackage (#2637) 2016-12-19 14:26:47 -08:00
George Hartzell
d8efeabf77 Update digest for vim@8.0 tarball. (#2600)
* Update digest for vim@8.0 tarball.

The digest appears to have changed.

The new digest value matches the value in their
[MD5SUMS](ftp://ftp.vim.org/pub/vim/unix/MD5SUMS)
file.

* Change ftp.vim.org -> github.com/vim/vim/archive

Vim seems to do weekly releases, but the name of the tarball on
ftp.vim.org doesn't change so we have to regularly play 'update the
digest' (aka Internet whack-a-mole).

This commit changes the url so that we are now downloading particular
versions from the Vim project's github archive.

I didn't walk back through of time to get all of the versions that
used to be explicit.  I grabbed the final `7.4` and the current `8.0`
releases.  If people need more we can add them.
2016-12-19 14:26:16 -08:00
Adam J. Stewart
46436a0909 GSL: Add latest version, update to AutotoolsPackage (#2630) 2016-12-19 09:21:38 -08:00
Adam J. Stewart
08d323b1f8 NCO: Add latest version, update to AutotoolsPackage (#2629) 2016-12-19 08:49:37 -08:00
Todd Gamblin
b18738e03d Add gawk (GNU awk) (#2625)
* Add gawk, GNU awk.

* flake8 fix.
2016-12-18 22:35:23 -08:00
George Hartzell
6e1b3f621d Feature/add package for fastqc (#1573)
* Add package for fastqc

This tool is a java mess.  Their Way To Do It is to just copy the entire
tree into it's final resting place, make the perl script at the top
level executable and take it from there.

Yuck.

This package assumes that `set_executable` actually sets all the user
bits.  If that change doesn't go in, then something equivalent needs to
be done.

* Use chmod to make fastqc executable

I haven't gotten any feedback on changing set-executable, so switch to
using chmod (from the cuda package).

* Flake8 cleanup

* Install files neatly, don't just copy top level of dir

Rather than blindly copying everything in the distribution, carefully
put the necessary bits into reasonable places.  Neatness counts, etc...

This requires patching the `fastqc` perl script, so this commit adds a
patch file.

* Additional pep8 cleanup

* Let dependency handle adding jdk to PATH

* Flake8 cleanup

* Ensure that java is on PATH

I thought that the run dependency on the jdk would put
java on my PATH, but it does not appear to work.

For now, do it by hand.
2016-12-18 16:38:14 -08:00
Alfredo Adolfo Gimenez
68e9a2ed8d Added customization for make targets in 'build' and 'install' phases for AutotoolsPackage (#2464)
* Customization for make targets in build and test phases for AutotoolsPackage

* Updated Blitz++ to use customized make build and test targets

* Removed flake8 error

* Removed make test customization, added make install customization, need to figure out issues with multiple make targets

* Changed build_targets and install_targets to normal attributes
2016-12-18 16:27:47 -08:00
Chris MacMackin
0de7b5504e py-markdown: Add new package for python-markdown. (#2611)
* py-markdown: Add new package for python-markdown.

* py-markdown: Added restrictions on Python version.

* py-markdown: Removed upper-limit on compatible Python versions.

* py-markdown: Reinstated upper bound on Python version. Also fixed small formatting error.
2016-12-18 16:23:31 -08:00
Denis Davydov
1c0f28c559 gmsh: add 2.15.0 and switch to CMakePackage (#2620) 2016-12-18 16:20:37 -08:00
Denis Davydov
da2350a1c9 tbb: add 2017.3 (#2619) 2016-12-18 16:20:26 -08:00
Denis Davydov
aeb58dc2de cmake: add 3.7.1 (#2618) 2016-12-18 16:20:13 -08:00
Gregory Lee
592df25aef build fixes for openblas (#2601)
* build fixes for openblas

* avx2 in openblas nnot supported with older gcc

* merge fix for openblas
2016-12-17 17:04:59 -08:00
Denis Davydov
0ef55b831f dealii: fix config for Netcdf with lib64 (#2616) 2016-12-17 08:57:33 -08:00
Chris MacMackin
a1a41bb4c7 graphviz: fixed build error due to specifying ltdl lib but not include. (#2609)
* graphviz: fixed build error due to specifying ltdl lib but not include.

* graphviz: Fixed dependencies on libtool and expat.
2016-12-16 16:22:13 -08:00
Andrey Prokopenko
394f010952 libmesh: added mpi variant (#2584) 2016-12-16 15:39:55 -08:00
Thierry
5f88bea442 init nfft 3.3.2 package file (#2612)
* init nfft 3.3.2 package file

* shorten comment line
2016-12-16 15:36:34 -08:00
Chris MacMackin
3089d118c1 py-beautifulsoup4: Added version 4.5.1 (#2610) 2016-12-16 14:21:26 -08:00
Jon Rood
d7ff4b8f34 Updating Trilinos with superlu variant and fixing git branch version options. (#2604) 2016-12-16 14:14:50 -08:00
Adam J. Stewart
36072c4776 [HACK] Make concretization great again! (#2590)
* Always default to +mpi

* Always default to ~X
2016-12-16 10:49:02 -08:00
Massimiliano Culpo
87c9b01033 openblas: derives from MakefilePackage (#2488)
* MakefilePackage: changed build_args and install_args for consistency with #2464
openblas: derives from MakefilePackage

* MakefilePackage: changed default edit behavior
2016-12-15 10:15:52 -08:00
Massimiliano Culpo
f9ca5b9f27 go: see #2567, temporary fix (#2588) 2016-12-15 09:12:33 -08:00
Todd Gamblin
6971918c27 Add GNU patch to Spack. (#2598) 2016-12-15 01:35:45 -08:00
Jean-Paul Pelteret
8816cdea9e Blacklist flex 2.6.2 by commenting out package version (#2571)
Fixes #2554
2016-12-14 14:34:55 -08:00
George Hartzell
f487102c0c Update texlive digest (#2591)
Texlive is *live*, they update the contents of their tarball on a whim.

Here's the current one.
2016-12-14 11:55:48 -08:00
Kim Serradell
c02de564e4 New package py-cdo (#2569)
* Add python cdo support

* Correct pypi url

* Corrected a blanck space that was failing CI

* Corrected url that was failing CI

* Following @alalazo indications, Write this line wrapping it around 80 chars to pass Travis

* Added cdo package depency
2016-12-13 14:36:06 -08:00
Gregory Lee
392ed4f0cc Merge pull request #2506 from skosukhin/pr_python
A couple of updates for python package.
2016-12-13 13:56:15 -08:00
amklinv
f613445eb2 Added support for xSDKTrilinos package (#2201)
* Added support for xSDKTrilinos package

* Updated xsdktrilinos/package.py for PR review

* Added trilinos version # reqs to xsdktrilinos

* xsdktrilinos now uses CMakePackage

* Cleaned up xsdktrilinos/package.py

* Removed unused cxxflags from xsdktrilinos

* Removed unused sys import from xsdktrilinos
2016-12-13 11:50:10 -08:00
Denis Davydov
d855403546 likwid: remote root from INSTALL_CHOWN (#2564) 2016-12-13 10:46:31 -08:00
Denis Davydov
fab9af7081 slepc/petsc: fix python dependency (#2560) 2016-12-13 01:32:42 -08:00