Commit graph

11179 commits

Author SHA1 Message Date
Todd Gamblin
2a09b627c9 tests: rename builtin_mock to "mock_packages" for clarity.
- rename `builtin_mock` and `refresh_builtin_mock` to the more clear
  `mock_packages` and `mutable_mock_packages`
2018-05-17 14:10:30 -07:00
Todd Gamblin
d1903f3bf3 init: convert spack.debug global variable to config option 2018-05-17 14:10:30 -07:00
Todd Gamblin
47dc96224d init: remove package_testing global
- refactor the way test dependencies are passed to the concretizer
- remove global state
- update tests
2018-05-17 14:10:30 -07:00
Todd Gamblin
bc9f5f084f init: remove dependency on spack.version
- no longer require `spack_version` to be a Version (it isn't used that
  way anyway)

- use a simple tuple `spack_version_info` with major, minor, patch
  versions

- generate `spack_version` from the tuple
2018-05-17 14:10:30 -07:00
Todd Gamblin
678639749c init: remove binary_cache_retrieved_specs global variable
- remove variable from spack/__init__.py
- clean up imports and some code structure in binary_distribution.py
2018-05-17 14:10:30 -07:00
Todd Gamblin
3e6d85c404 init: remove spack.concretizer global variable 2018-05-17 14:10:30 -07:00
Todd Gamblin
d4709673b5 init: remove build_jobs global variable 2018-05-17 14:10:30 -07:00
Todd Gamblin
2ab7b7a5a0 init: convert spack.dirty global to config option 2018-05-17 14:10:30 -07:00
Todd Gamblin
278933e824 init: remove template_dirs global
- remove template_dirs global variable from __init__.py

- also remove update_template_dirs fixture, which had no effect on test
  correctness
2018-05-17 14:10:30 -07:00
Todd Gamblin
77bd2dd706 init: replace global spack.do_checksum with config option 2018-05-17 14:10:30 -07:00
Todd Gamblin
73ab0e5dd7 init: replace spack.insecure global with spack.config.get 2018-05-17 14:10:30 -07:00
Todd Gamblin
863ccd5e94 config: simplify configuration API to just get and set
- replace `spack.config.get_configuration()` with `spack.config.config()`

- replace `get_config`/`update_config` with `get`, `set`

- add a path syntax that can be used to refer to specific config options
  without firt getting the entire configuration dict

- update usages of `get_config` and `update_config` to use `get` and `set`
2018-05-17 14:10:30 -07:00
Todd Gamblin
c9ea957563 config: create internal config scope for commands to use. 2018-05-17 14:10:30 -07:00
Todd Gamblin
eee502cc3b init: Move file cache initialization out of __init__.py 2018-05-17 14:10:30 -07:00
Todd Gamblin
d3a1ccd2fa config: rework config system into a class instead of globals
- Current configuration code forces the config system to be initialized
  at module scope, so configs are parsed on every Spack run, essentially
  before anything else.

- We need more control over configuration init order, so move the config
  scopes into a class and reduce global state in config.py
2018-05-17 14:10:30 -07:00
Todd Gamblin
6e398c7f08 init: move editor from spack/__init__.py to spack.util.editor 2018-05-17 14:10:30 -07:00
Todd Gamblin
a4d276fbe4 init: factor paths out of spack/__init__.py and into spack.paths module 2018-05-17 14:10:30 -07:00
Todd Gamblin
74aee60f7d init: simplify import ordering in __init__.py 2018-05-17 14:10:30 -07:00
Denis Davydov
d579231967 flex: use 2.6.3. by default (#8154)
Fixes #8152

Flex 2.6.4 doesn't build with gcc@7:. This sets Flex 2.6.3 as the
preferred version. The flex package had a conflict directive for
this but originally the recorded conflict was specific to ubuntu;
this appears to be an issue on multiple operating systems so this
also updates the conflict to be more general and adds a comment
which links to the relevant issues.
2018-05-17 13:58:29 -07:00
lingnanyuan
a46f2b8e42 swap-assembler: Create new package. (#8144)
* swap-assembler: Create new package.

* swap-assembler: fix flake8 error.
2018-05-17 15:43:30 -05:00
Christoph Junghans
110511da92 pv: initial commit (#8147) 2018-05-17 15:40:54 -05:00
Levi Baber
0141581a66 r-rstan: new version and dependents (#8158)
* r-stanheaders: new version

* r-rstan: new version

* r-rcppeigen: new version

* r-rstan: requires newer version of r-rcppeigen
2018-05-17 15:26:38 -05:00
Serban Maerean
e24a56b8cb Add version 6.1. to ESSL spackage file. (#8170) 2018-05-17 15:04:28 -05:00
Jim Galarowicz
dfd168d557 cbtf-argonavis-gui: add openspeedshop-utils package to address qt conflicts (#8066)
Fixes #7946

Creates an openspeedshop-utils package that does not depend on qt3
and can be used to resolve the needs of cbtf-argonavis-gui.

Changes for creating a release versus develop build are also
included. There are package versions which are no longer relevant
(e.g. 1.3.0 for cbtf-argonavis-gui has been replaced with 1.3.0.0)
but these versions need to be kept to allow uninstalling them;
issue #8173 has been created to investigate this.
2018-05-17 12:04:33 -07:00
Adam J. Stewart
de7d13b0e8
Add dependencies for py-dask (#8120) 2018-05-16 22:54:33 -05:00
健美猞猁
b895386fd7 r-rcppcnpy: a new package. (#8139)
* r-rcppcnpy: a new package.

* Specify dependency versions.

* Update dependency.
2018-05-16 12:45:24 -05:00
Eric
218e32991d Add list_url to allow download of prior versions from cran archive (#8141) 2018-05-15 22:10:20 -05:00
David Böhme
e3035fb91a Add libunwind-1.2.1 (#8145) 2018-05-15 13:54:23 -07:00
Denis Davydov
e0dcd87af9 astyle: add 3.1 (#8137) 2018-05-15 09:43:27 -05:00
Zack Galbreath
f7d080b7fb Move report writers to separate classes 2018-05-15 05:43:07 -07:00
Zack Galbreath
49e37a5ecf Add test case for CDash reporting 2018-05-15 05:43:07 -07:00
Zack Galbreath
218331552c upload reports to CDash 2018-05-15 05:43:07 -07:00
Zack Galbreath
847c1216d0 Generate CDash reports for build/install step 2018-05-15 05:43:07 -07:00
Zack Galbreath
ae0ba373b8 CDash report for concretization errors
Capture any concretization errors and record them in a CTest Update.xml file.
2018-05-15 05:43:07 -07:00
Zack Galbreath
d7581697a5 CDash report for configure step
Generate CTest XML file containing configure output
2018-05-15 05:43:07 -07:00
Zack Galbreath
f35d5bbf2b Capture source line number in CTest log parser 2018-05-15 05:43:07 -07:00
Zack Galbreath
d174d6618f Fix typo in comment 2018-05-15 05:43:07 -07:00
Zack Galbreath
072f907831 Add CDash as a valid reporting format 2018-05-15 05:43:07 -07:00
Zack Galbreath
e4e8c72fa1 Initialize report generator before parsing specs
This will allow us to generate reports for concretization errors
2018-05-15 05:43:07 -07:00
Zack Galbreath
de01d70ae4 Allow --overwrite and --log-format to be used together
Restructure the logic of the spack install command to allow these two
command-line arguments to be used at the same time.
2018-05-15 05:43:07 -07:00
Zack Galbreath
6c5dbdd9cd Format-agnostic data structure for reports
Replace the JUnit-specific terms 'testsuite' and 'testcase' with
'spec' and 'package', respectively.
2018-05-15 05:43:07 -07:00
Serban Maerean
0598f70de2 patch petsc test cases for XL compiler (#8091)
- After spack install, these test cases are built in a seperate step, outside of spack, but they need to patched after staging so users don't have to do it in a seperate step.

- The test cases are installed under `<petsc install directory>/share/petsc/examples` and can be built and executed by invoking `gmake -f gmakefile.test` in that directory.
2018-05-14 23:53:05 -07:00
Robert Pavel
b956608631 Added Shim to Support hdf5+mpi in Spack Silo (#8130)
* Added Shim to Support hdf5+mpi in Spack Silo

Added compatibility for hdf5+mpi to silo spackage to support spackages
with dependency chains that include silo and hf5+mpi

* Fixed fixable flake8 issue with silo spackage

Fixed missing whitespace around operator

* Setting MPI Variant to Default to True

As per guidance changing variant to default to MPI builds
2018-05-14 20:29:03 -05:00
snehring
538d617d14 salmon: adding in version restriction for boost (#8129)
1.67 does not work with this
2018-05-14 18:48:28 -05:00
Cameron Smith
3a7fadd67e prenek missing X.h (#8121) 2018-05-14 18:19:46 -05:00
lingnanyuan
34a2d35e50 lordec: Create new package. (#8095)
* lordec: Create new package.

* lordec: Add homepage, change to MakefilePackage.

* Modify dependency type.
2018-05-14 16:56:49 -05:00
Eric
6cf1d25d14 r-fit-models: Create new package (#8122) 2018-05-14 16:50:54 -05:00
Eric
c5b1336b69 r-vipor: Create new package (#8128) 2018-05-14 16:38:59 -05:00
Brian Van Essen
281e22ed73 LBANN: add hydrogen as optional dependency (#8085)
Add Hydrogen package for fork of Elemental library. Update LBANN
to use either Hydrogen or Elemental.
2018-05-14 11:58:34 -07:00
Eric
e7a737621f r-shinydashboard: Create new package (#8116) 2018-05-14 13:00:18 -05:00