Commit graph

30654 commits

Author SHA1 Message Date
sparkyniner
21e6679056
spack list: add --tag flag (#32016)
* modified list.py and added functionality for --tag

* Removed long and very long, shifted rest of code above return statement

* removed results variable

* added import statement at top

* added the line accidentally deleted

* added line accidentally deleted

* changed p.name to p, added line inside if statement

* line order switched

* [@spackbot] updating style on behalf of sparkyniner

* ran update completion command

* add tests

* Update lib/spack/spack/test/cmd/list.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* [@spackbot] updating style on behalf of sparkyniner

* changed argument to mock_packages and moved code under filter by tag

* removed bad rebase code and added additional test

* [@spackbot] updating style on behalf of sparkyniner

* added line removed earlier

* added line removed earlier

* replaced function

* added more recommended changes

Co-authored-by: sairaj <sairaj@sairajs-MacBook-Pro.local>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-20 16:09:44 -06:00
Morten Kristensen
8d02e2cc52
py-vermin: add latest version 1.4.2 (#32287) 2022-08-20 13:35:07 -05:00
Axel Huebl
39beafc99a
Ascent, Conduit & VTK-h: don't assume I have Fortran (#32285)
* VTK-h: don't assume I have Fortran

Don't assume I have a working Fortran compiler in my toolchain :)

* Conduit: Do not Assume Fortran

* Ascent: Do not Assume Fortran

* fix style
2022-08-20 10:12:23 -07:00
kwryankrattiger
fff929d5ab
WarpX: Add hints for FindMPI (#31842)
This seems to be needed on some cray systems and is safe on normal
desktops.
2022-08-20 15:45:03 +02:00
Olivier Cessenat
51619fdb00
gxsview: new version 2022.05.09 (#32289) 2022-08-20 14:33:10 +02:00
Axel Huebl
7db1c69945
Vis: macOS llvm-openmp (#32284)
Add some OpenMP lib provider for Apple-Clang to the vis packages.
2022-08-20 01:11:03 -07:00
Sreenivasa Murthy Kolam
11a4f5e25d
Enable Tensorflow for ROCm. Add ROCm dependencies. (#32248)
* Build Tensorflow using the fork for rocm. Initial commit

* re-order the versions

* fix style errors

* address review comments

* add conflicts for rocm version

* address review comments

* remove rocm variant as its added by ROCmPackage
2022-08-20 01:50:38 +00:00
eugeneswalker
5590cad1ef
py-globus-sdk: add new versions; unpin py-cryptography version constraint (#32280)
* add mothra tests

* py-globus-sdk: add new versions; unpin py-cryptography version constraint

* Update var/spack/repos/builtin/packages/py-globus-sdk/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-19 19:30:07 -06:00
eugeneswalker
09486c082c
py-pyjwt: fix py-cryptography version constraints (#32279)
* py-pyjwt: fix py-cryptography version constraints

* Update var/spack/repos/builtin/packages/py-pyjwt/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-19 18:50:20 -06:00
Adam J. Stewart
dab46296b6
py-setuptools: add v64.0.0 (#32078) 2022-08-19 14:20:08 -07:00
Axel Huebl
7f314947dd
Doc: WarpX SENSEI Work-Around (#32276)
Follow-up to #31542
2022-08-19 14:10:00 -06:00
Rémi Lacroix
56e4203450
netcdf-cxx: Update the download URL (#32275) 2022-08-19 18:44:14 +00:00
Adam J. Stewart
b0990aa1fa
py-pygments: add v2.13.0 (#32168) 2022-08-19 18:09:51 +00:00
Seth R. Johnson
e29d9de2dd
ForTrilinos: new versions 2.0.1, 2.1.0 (#32265)
* ForTrilinos: new versions 2.0.1, 2.1.0

I also had to update the checksum for the released 2.0.0: see #32000 for
the explanation and solution to keep this from happening again.

* Soooo stylish
2022-08-19 11:37:55 -06:00
Harmen Stoppels
7acc082fba
ncurses 6.3 restrict patch (#32271) 2022-08-19 10:11:32 -07:00
Olivier Cessenat
362cdc5437
pcsclite: add new package (#32129) 2022-08-19 18:22:15 +02:00
eugeneswalker
e1bce8c577
e4s %oneapi: add aml +ze (level zero) (#32161) 2022-08-19 08:25:15 -07:00
Seth R. Johnson
7760625b3f
py-macholib: add v1.16 (#31967)
* py-macholib: add v1.16

* Update dependencies

Even 1.11 requires `altgraph (>=0.15)`. The lastest requires no
additional dependencies.
2022-08-19 08:25:51 -06:00
dunatotatos
77c2332df6
htslib, samtools: add v1.15 and v1.15.1 (#32259) 2022-08-19 13:56:14 +00:00
Olivier Cessenat
8773c183b5
ghostscript: new version 9.56.1 (#32088) 2022-08-19 15:00:14 +02:00
Harmen Stoppels
2daea9e4b4
docs: add a note about an issue being solved on develop (#32261) 2022-08-19 12:40:41 +00:00
psakievich
abf847ce82
Add messages to assertions in asp.py (#32237)
Assertions without messages if/when hit create a blank error message for users.  

This PR adds error messages to all assertions in asp.py even
if it seems unlikely they will ever be needed.
2022-08-19 14:15:25 +02:00
iarspider
8d99d33128
xpmem: fix configure with ~kernel-module (#32258) 2022-08-19 12:36:11 +02:00
eugeneswalker
a42a874faa
e4s oneapi: compiler environment: prepend lib dir to LD_LIBRARY_PATH (#32227) 2022-08-19 06:30:18 -04:00
Mikael Simberg
be62635154
Add tracy variant to pika (#32090) 2022-08-19 02:38:07 -06:00
eugeneswalker
022d59f4a5
e4s: add dealii +cuda (#32159) 2022-08-18 22:41:57 -06:00
Massimiliano Culpo
605d72133b
spack.util.package_hash: parametrize unit-tests (#32240)
* spack.util.package_hash: parametrize unit-tests

* Fix comment
2022-08-18 18:17:43 -07:00
eugeneswalker
b2d1d07d2e
e4s %oneapi: add amrex +sycl (#32162) 2022-08-18 18:16:55 -07:00
Mark W. Krentel
908055e37c
hpctoolkit: update git url from github to gitlab (#32252) 2022-08-18 17:35:34 -07:00
Wouter Deconinck
90352d7223
kassiopeia: new version 3.8.2 (#32254)
* kassiopeia: new version 3.8.2

There was no version 3.8.1, so here is the diff with 3.8.0: https://github.com/KATRIN-Experiment/Kassiopeia/compare/v3.8.0...v3.8.2

Build system changes:
- default `cxxstd` is now 17.

* kassiopeia: updated hash

* kassiopeia: use spec.satisfies

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-18 17:20:17 -07:00
kwryankrattiger
d77a8f7aa1
Sensei v4 (#30432)
* Sensei: Refactor package to work with v4.0.0

* Add missing MPI dependency
* Patch bug in libsim adapter
* Simplify conflicts with when-clauses
* Conflict variants that are incompatible (catalyst/libsim/ascent)
* Fix paraview version constraints to be more clear
* Add version constraints for VTK
* Drop unneeded visit restrictions
* Specify +vtkm dependency on ParaView's VTKm
* +hl is not needed for VTK, and is already specified in the VTK recipe
when it is needed
* Pass paths for adios2 and ascent packages

* ECP-SDK: Enable sensei

* CI: Add sensei to the data-vis-sdk pipeline

* Sensei: Change VISIT_DIR to work on linux

* Fixup: style check

* Sensei: Add patch for version detection

* CI: revert SDK pipeline in favor of new matrices

* Sensei: Formatting fixes
2022-08-18 17:20:01 -07:00
snehring
364e4e03ef
pasta: missing setuptools dep (#32220)
* pasta: missing setuptools dep

* pasta: remove extraneous which

* pasta: convert to PythonPackage

* pasta: specify dendropy version
2022-08-18 22:53:09 +00:00
Adam J. Stewart
373d2ccf9f
py-rasterio: add v1.3.1 (#32244) 2022-08-18 21:08:46 +00:00
Gregory Lee
0a8df434d2
added qt-creator 5.0.3 (#32241)
* added qt-creator 5.0.3

* [@spackbot] updating style on behalf of lee218llnl

Co-authored-by: lee218llnl <lee218llnl@users.noreply.github.com>
2022-08-18 19:35:44 +00:00
Sergey Kosukhin
15be91b585
autoconf-archive: fetch patch from github (#32232)
* autoconf-archive: fetch patch from github

* autoconf-archive: do not try to patch libtool
2022-08-18 10:55:04 -07:00
Thomas Gruber
bfa67bb275
Add patch for MEM_* group for Intel Icelake SP for 5.2.0 and newer (#32235) 2022-08-18 10:30:56 -07:00
Massimiliano Culpo
3c6b5b8afc
Remove unused argument in test fixture (#32236)
The argument is very likely a typo, and was meant to
be given to the fixture decorator. Since the value
being passed is the default, let's just remove it.
2022-08-18 10:22:50 -07:00
Robert Cohn
1cdc50e3f6
ascent: fix oneapi build (#32239) 2022-08-18 17:15:39 +00:00
eugeneswalker
cfa4bffe26
e4s ci stack: add catalyst build (#31993) 2022-08-18 10:49:51 -06:00
Robert Cohn
3d4705ffab
flux-sched: fix oneapi build (#32233) 2022-08-18 07:34:34 -07:00
Massimiliano Culpo
9d55a0436b
spec: fix typo in Spec._finalize_concretization (#32210) 2022-08-18 15:04:08 +02:00
Olivier Cessenat
5981225d5a
latex2html: new version V2022.2 (#32089) 2022-08-18 12:34:35 +00:00
Massimiliano Culpo
7f81a0a25e
CI: move nightly macOS builds from GA to pipelines (#32231)
Modifications:
- [x] Delete the `macOS builds nightly` workflow
- [x] Removed shield in README.md
- [x] Moved corresponding specs to `e4s-macos`
2022-08-18 09:13:37 +00:00
Axel Huebl
5a59e1b77a
hiredis: set install_name on macos, ccache: optional hiredis (#32219)
* hiredis: set install_name on macos
* ccache: make hiredis optional

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-08-18 08:49:53 +00:00
snehring
a164b0b3e6
Update busco to 5.4.3 (#32221)
* metaeuk: new package

* sepp: new package

* busco: adding version 5.4.3

* busco: adding maintainers

* metauk: more accurate cmake dep

* sepp: adding missing dep and accurate python dep

* sepp: remove install_tree

* sepp: extend python
2022-08-17 23:31:04 -06:00
Adam J. Stewart
d398e91e88
py-pytorch-lightning: add v1.7.2 (#32226) 2022-08-18 04:25:16 +00:00
Sergey Kosukhin
f2adbafe38
mpich: add patch fixing MPI_MIN for unsigned integers (#32188) 2022-08-17 19:25:56 -06:00
Tom Scogland
b9e57006c9
bugfix: use cmake version from dependency (#31739)
Ensure that build tools with module-level commands in spack use
the version built as part of their build graph if one exists.
This is now also required for mesa, scons, cmake and ctest, out
of graph versions of these tools in path will not be found unless
added as an external.

This bug appeared because a new version of rocprim needs cmake
3.16, while I have 3.14 in my path I had added an external for
cmake 3.20 to the dag, but 3.14 was still used to configure
rocprim causing it to fail. As far as I can tell, all the build
tools added in build_environment.py had this problem, despite the
fact that they should have been resolving these tools by name
with a path search and find the one in the dag that way. I'm
still investigating why the path searching and Executable logic
didn't do it, but this makes three of the build systems much more
explicit, and leaves only gmake and ninja as dependencies from
out in the system while ensuring the version in the dag is used
if there is one.

The additional sqlite version is to perturb the hash of python to
work around a relocation bug which will be fixed in a subsequent
PR.
2022-08-17 17:54:17 -07:00
牟展佑
c386181c0f
LLVM: add @15.0.0-rc1 (#31945) 2022-08-17 16:53:59 -06:00
Mikhail Titov
33c3cf2412
rct: update packages (RE, RG, RP, RS, RU) with new versions (#32216) 2022-08-17 22:42:48 +00:00