Added more FASTMath packages.

var/spack/packages/arpack/package.py

@@ -0,0 +1,22 @@
+from spack import *
+
+class Arpack(Package):
+    """FIXME: put a proper description of your package here."""
+    homepage = "http://www.caam.rice.edu/software/ARPACK/"
+    url      = "http://www.caam.rice.edu/software/ARPACK/SRC/arpack96.tar.gz"
+
+    version('96', 'fffaa970198b285676f4156cebc8626e')
+
+    depends_on('blas')
+    depends_on('lapack')
+
+    def install(self, spec, prefix):
+        move('./ARMAKES/ARmake.CRAY', './ARmake.inc')
+        filter_file('PLAT          = CRAY', 'PLAT = ', './ARmake.inc', string=True)
+        filter_file('home = $(HOME)/ARPACK', 'home = %s' % pwd(), './ARmake.inc', string=True)
+        filter_file('BLASdir      = $(home)/BLAS', 'BLASdir = %s' % spec['blas'].prefix, './ARmake.inc', string=True)
+        filter_file('LAPACKdir    = $(home)/LAPACK', 'LAPACKdir = %s' % spec['lapack'].prefix, './ARmake.inc', string=True)
+        filter_file('ARPACKLIB  = $(home)/libarpack_$(PLAT).a', 'ARPACKLIB = %s/lib/libarpack.a' % prefix, './ARmake.inc', string=True)
+        
+        cd('./SRC')
+        make('all')

var/spack/packages/arpack/package.py.save

@@ -0,0 +1,15 @@
+from spack import *
+
+class Arpack(Package):
+    """ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems."""
+
+    homepage = "http://www.caam.rice.edu/software/ARPACK/"
+    url      = "http://www.caam.rice.edu/software/ARPACK/SRC/arpack96.tar.gz"
+
+    version('96', 'fffaa970198b285676f4156cebc8626e')
+
+    depends_on("blas")
+    depends_on("lapack")
+
+    def install(self, spec, prefix):
+        

var/spack/packages/boxlib/package.py

@@ -0,0 +1,15 @@
+from spack import *
+
+class Boxlib(Package):
+    """BoxLib, a software framework for massively parallel block-structured adaptive mesh refinement (AMR) codes."""
+
+    homepage = "https://ccse.lbl.gov/BoxLib/"
+    url = "https://ccse.lbl.gov/pub/Downloads/BoxLib.git";
+
+    version('master', 'https://ccse.lbl.gov/pub/Downloads/BoxLib.git')
+
+    def install(self, spec, prefix):
+        #configure("--prefix=%s" % prefix)
+        #make()
+        #make("install")
+        cd(pwd())

var/spack/packages/cblas/package.py

@@ -0,0 +1,22 @@
+from spack import *
+import os
+
+class Cblas(Package):
+    """The BLAS (Basic Linear Algebra Subprograms) are routines that provide standard 
+    building blocks for performing basic vector and matrix operations."""
+
+    homepage = "http://www.netlib.org/blas/_cblas/"
+
+    version('unversioned', '1e8830f622d2112239a4a8a83b84209a', 
+        url='http://www.netlib.org/blas/blast-forum/cblas.tgz')
+
+    depends_on('blas')
+    parallel = False
+
+    def install(self, spec, prefix):    
+        filter_file('BLLIB = /Users/julie/Documents/Boulot/lapack-dev/lapack/trunk/blas_LINUX.a', 'BLLIB = %s/libblas.a' % spec['blas'].prefix.lib, './Makefile.in', string=True)
+        
+        make('all') # Compile.
+        mkdirp('%s' % prefix.lib) # Create the lib dir inside the install dir.
+        move('./lib/cblas_LINUX.a', '%s/libcblas.a' % prefix.lib) # Rename the generated lib file to libcblas.a
+        

var/spack/packages/cgm/package.py

@@ -0,0 +1,22 @@
+from spack import *
+
+class Cgm(Package):
+    """The Common Geometry Module, Argonne (CGMA) is a code library which provides geometry functionality used for mesh generation and other applications."""
+    homepage = "http://trac.mcs.anl.gov/projects/ITAPS/wiki/CGM"
+    url      = "http://ftp.mcs.anl.gov/pub/fathom/cgm13.1.1.tar.gz"
+
+    version('13.1.1', '4e8dbc4ba8f65767b29f985f7a23b01f')
+    version('13.1.0', 'a6c7b22660f164ce893fb974f9cb2028')
+    version('13.1'  , '95f724bda04919fc76818a5b7bc0b4ed')
+
+    depends_on("openmpi")
+
+    def install(self, spec, prefix):
+        configure("--with-mpi",
+                "--prefix=%s" % prefix, 
+                "CFLAGS=-static", 
+                "CXXFLAGS=-static", 
+                "FCFLAGS=-static") 
+
+        make()
+        make("install")

var/spack/packages/fastmath/package.py

@@ -0,0 +1,15 @@
+from spack import *
+
+class Fastmath(Package):
+    """Dummy groupinstall package that installs all packages in the fastmath suite."""
+
+    homepage = "http://redmine.scorec.rpi.edu/projects/fastmath"
+    url      = "http://www.netlib.org/blas/blas.tgz"
+
+    version('1.0', '5e99e975f7a1e3ea6abcad7c6e7e42e6')
+
+    depends_on('blas')
+    depends_on('lapack')
+
+    def install(self, spec, prefix):
+        pwd()

var/spack/packages/hdf5/package.py

@@ -23,9 +23,9 @@ def install(self, spec, prefix):
             "--prefix=%s" % prefix,
             "--with-zlib=%s" % spec['zlib'].prefix,
             "--enable-parallel",
-            "--enable-shared",
-            "CC=%s" % spec['mpich'].prefix.bin + "/mpicc",
-            "CXX=%s" % spec['mpich'].prefix.bin + "/mpic++")
+            "--enable-shared")
+           # "CC=%s" % spec['mpich'].prefix.bin + "/mpicc",
+           # "CXX=%s" % spec['mpich'].prefix.bin + "/mpic++")
 
         make()
         make("install")

var/spack/packages/hypre/package.py

@@ -0,0 +1,33 @@
+from spack import *
+
+class Hypre(Package):
+    """Hypre is a library of high performance preconditioners that features parallel multigrid 
+    methods for both structured and unstructured grid problems."""
+
+    homepage = "https://computation.llnl.gov/project/linear_solvers/software.php"
+    url      = "https://computation.llnl.gov/project/linear_solvers/download/hypre-2.10.0b.tar.gz"
+
+    version('2.10.0b', '768be38793a35bb5d055905b271f5b8e')
+
+    depends_on("openmpi")
+    depends_on("blas")
+    depends_on("lapack")
+
+    def install(self, spec, prefix):
+        blas_dir = spec['blas'].prefix
+        lapack_dir = spec['lapack'].prefix
+
+        # Hypre's source is staged under ./src so we'll have to manually 
+        # cd into it.
+        cd("./src")
+
+        configure(
+            "--prefix=%s" % prefix,
+            "--with-blas-libs=blas",
+            "--with-blas-lib-dirs=%s/lib" % blas_dir,
+            "--with-lapack-libs=\"lapack blas\"",
+            "--with-lapack-lib-dirs=%s/lib" % lapack_dir,
+            "--with-MPI")
+
+        make()
+        make("install")

var/spack/packages/hypre/package.py.save

@@ -0,0 +1,26 @@
+from spack import *
+
+class Hypre(Package):
+    """Hypre is a library of high performance preconditioners that features parallel multigrid 
+    methods for both structured and unstructured grid problems."""
+
+    homepage = "https://computation.llnl.gov/project/linear_solvers/software.php"
+    url      = "https://computation.llnl.gov/project/linear_solvers/download/hypre-2.10.0b.tar.gz"
+
+    version('2.10.0b', '768be38793a35bb5d055905b271f5b8e')
+
+    depends_on("openmpi")
+    depends_on("blas")
+    depends_on("lapack")
+
+    def install(self, spec, prefix):
+        lapack_dir = spec['lapack'].prefix        
+        configure(
+            "--prefix=%s" % prefix, 
+            "--with-blas-libs=blas", 
+            "--with-blas-lib-dirs=%s/lib" % spec['blas'].prefix, 
+            "--with-lapack-libs=lapack blas", 
+            "--with-lapack-lib-dirs=%s/lib" % lapack_dir)
+        
+        make()
+        make("install")

var/spack/packages/metis/package.py

@@ -5,28 +5,23 @@ class Metis(Package):
        partitioning finite element meshes, and producing fill reducing
        orderings for sparse matrices. The algorithms implemented in
        METIS are based on the multilevel recursive-bisection,
-       multilevel k-way, and multi-constraint partitioning schemes
-       developed in our lab."""
+       multilevel k-way, and multi-constraint partitioning schemes."""
 
     homepage = "http://glaros.dtc.umn.edu/gkhome/metis/metis/overview"
     url      = "http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz"
 
     version('5.1.0', '5465e67079419a69e0116de24fce58fe')
 
-    # FIXME: Add dependencies if this package requires them.
-    # depends_on("foo")
-
-    def patch(self):
-        filter_file(r'#define IDXTYPEWIDTH 32', '#define IDXTYPEWIDTH 64', 'include/metis.h',
-                    string=True)
-
+    depends_on('mpi')
 
     def install(self, spec, prefix):
-        with working_dir('spack-build', create=True):
-            cmake('..',
-                  '-DGKLIB_PATH=../GKlib',
-                  '-DBUILD_SHARED_LIBS=TRUE',
-                  *std_cmake_args)
-            make()
-            make("install")
+        cmake(".",
+              '-DGKLIB_PATH=%s/GKlib' % pwd(),
+              '-DSHARED=1',
+              '-DCMAKE_C_COMPILER=mpicc',
+              '-DCMAKE_CXX_COMPILER=mpicxx',
+              '-DSHARED=1',
+              *std_cmake_args)
 
+        make()
+        make("install")

var/spack/packages/parpack/package.py

@@ -0,0 +1,26 @@
+from spack import *
+
+class Parpack(Package):
+    """ARPACK is a collection of Fortran77 subroutines designed to solve large 
+       scale eigenvalue problems."""
+
+    homepage = "http://www.caam.rice.edu/software/ARPACK/download.html"
+    url      = "http://www.caam.rice.edu/software/ARPACK/SRC/parpack96.tar.Z"
+
+    version('96', 'a175f70ff71837a33ff7e4b0b6054f43')
+
+    depends_on('blas')
+    depends_on('lapack')
+
+    def install(self, spec, prefix):
+        move("./ARMAKES/ARmake.CJ", "./ARmake.inc");        
+        filter_file('home = /home1/Netlib/ARPACK', 'home = %s' % pwd(), './ARmake.inc', string=True)
+        filter_file('PLAT = CJ', 'PLAT = ', './ARmake.inc', string=True)
+        filter_file('LAPACKdir    = $(home)/LAPACK', 'LAPACKLIB = %s' % spec['lapack'].prefix, './ARmake.inc', string=True)
+        filter_file('BLASdir      = $(home)/BLAS', 'BLASLIB = %s' % spec['blas'].prefix, './ARmake.inc', string=True)
+        filter_file('ARPACKLIB  = $(home)/libarpack_$(PLAT).a', 'ARPACKLIB = %s/libarpack.a' % prefix, './ARmake.inc', string=True)
+        filter_file('MAKE    = /bin/make', 'MAKE = make', './ARmake.inc', string=True)
+        filter_file('FFLAGS', '#FFLAGS', './ARmake.inc', string=True)
+        filter_file('FC      = f77', 'FC = gfortran', './ARmake.inc', string=True)
+        cd('./PARPACK/SRC/MPI')
+        make('all')

var/spack/packages/petsc/package.py

@@ -0,0 +1,35 @@
+from spack import *
+
+class Petsc(Package):
+    """PETSc is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations."""
+
+    homepage = "http://www.mcs.anl.gov/petsc/index.html"
+    url      = "http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-3.5.3.tar.gz"
+
+    version('3.5.3', 'd4fd2734661e89f18ac6014b5dd1ef2f')
+    version('3.5.2', 'ad170802b3b058b5deb9cd1f968e7e13')
+    version('3.5.1', 'a557e029711ebf425544e117ffa44d8f')
+
+    depends_on("blas")
+    depends_on("lapack")
+    depends_on("hypre")
+    depends_on("parmetis")
+    depends_on("metis")
+    depends_on("hdf5")
+
+    def install(self, spec, prefix):
+        configure("--prefix=%s" % prefix,
+                  "--with-blas-lib=%s/lib/libblas.a" % spec['blas'].prefix,
+                  "--with-lapack-lib=%s/lib/liblapack.a" % spec['lapack'].prefix,
+                  "--with-hypre-lib=%s/lib/libhypre.a" % spec['hypre'].prefix,
+                  "--with-hypre-include=%s/include" % spec['hypre'].prefix,
+                  "--with-parmetis-lib=%s/lib/libparmetis.a" % spec['parmetis'].prefix,
+                  "--with-parmetis-include=%s/include" % spec['parmetis'].prefix,
+                  "--with-metis-lib=%s/lib/libmetis.a" % spec['metis'].prefix,
+                  "--with-metis-include=%s/include" % spec['metis'].prefix,
+                  "--with-hdf5-lib=%s/lib/libhdf5.a" % spec['hdf5'].prefix,
+                  "--with-hdf5-include=%s/include" % spec['hdf5'].prefix,
+                  "--with-shared-libraries=0")
+
+        make()
+        make("install")

var/spack/packages/zoltan_distrib/package.py

@@ -0,0 +1,33 @@
+# FIXME:
+# This is a template package file for Spack.  We've conveniently
+# put "FIXME" labels next to all the things you'll want to change.
+#
+# Once you've edited all the FIXME's, delete this whole message,
+# save this file, and test out your package like this:
+#
+#     spack install zoltan_distrib
+#
+# You can always get back here to change things with:
+#
+#     spack edit zoltan_distrib
+#
+# See the spack documentation for more information on building
+# packages.
+#
+from spack import *
+
+class ZoltanDistrib(Package):
+    """FIXME: put a proper description of your package here."""
+
+    homepage = "http://www.example.com"
+    url      = "http://www.cs.sandia.gov/~kddevin/Zoltan_Distributions/zoltan_distrib_v3.81.tar.gz"
+
+    version('3.81', 'e0587ac69dbc3b17d28f515ed0933719')
+
+    def install(self, spec, prefix):
+        # FIXME: Modify the configure line to suit your build system here.
+        configure("--prefix=%s" % prefix)
+
+        # FIXME: Add logic to build and install here
+        make()
+        make("install")