r-glmnet: update version. (#5470)

* r-glmnet: Create New Package.

* pr-quantities: add version & py-numpy conflict (#5307)

* r-glmnet: Update version to 2.0-13

* r-matrix: Update version to 1.2-11

* r-lattice: Update version to 0.20-35.

var/spack/repos/builtin/packages/r-glmnet/package.py

@@ -33,9 +33,10 @@ class RGlmnet(RPackage):
     multinomial. The algorithm uses cyclical coordinate descent in a path-wise
     fashion, as described in the paper linked to via the URL below."""
 
-    homepage = "http://www.jstatsoft.org/v33/i01/"
-    url      = "https://cran.r-project.org/src/contrib/glmnet_2.0-5.tar.gz"
-
+    homepage = "https://cran.rstudio.com/web/packages/glmnet/index.html"
+    url      = "https://cran.rstudio.com/src/contrib/glmnet_2.0-13.tar.gz"
+    list_url = homepage
+    version('2.0-13', '1dd5636388df5c3a29207d0bf1253343')
     version('2.0-5', '049b18caa29529614cd684db3beaec2a')
 
     depends_on('r-matrix', type=('build', 'run'))

var/spack/repos/builtin/packages/r-lattice/package.py

@@ -32,6 +32,8 @@ class RLattice(RPackage):
     handle most nonstandard requirements. See ?Lattice for an introduction."""
 
     homepage = "http://lattice.r-forge.r-project.org/"
-    url      = "https://cran.r-project.org/src/contrib/lattice_0.20-34.tar.gz"
+    url      = "https://cran.rstudio.com/src/contrib/lattice_0.20-35.tar.gz"
+    list_url = homepage
 
+    version('0.20-35', '07f1814623b3da6278ca61554ff7bfe6')
     version('0.20-34', 'c2a648b22d4206ae7526fb70b8e90fed')

var/spack/repos/builtin/packages/r-matrix/package.py

@@ -30,8 +30,9 @@ class RMatrix(RPackage):
     using 'LAPACK' and 'SuiteSparse'."""
 
     homepage = "http://matrix.r-forge.r-project.org/"
-    url      = "https://cran.r-project.org/src/contrib/Matrix_1.2-8.tar.gz"
-
+    url      = "https://cran.rstudio.com/src/contrib/Matrix_1.2-11.tar.gz"
+    list_url = homepage
+    version('1.2-11', 'a8c1a893f36d7ea918ddbf8cb8d10b43')
     version('1.2-8', '4a6406666bf97d3ec6b698eea5d9c0f5')
     version('1.2-6', 'f545307fb1284861e9266c4e9712c55e')