From f814e9bba127434d1ae7d951f2c2fc06796dcb95 Mon Sep 17 00:00:00 2001 From: Yifan Zhu Date: Tue, 24 Oct 2017 04:21:31 -0500 Subject: [PATCH] r-illuminaio: created new package (#5849) --- .../builtin/packages/r-illuminaio/package.py | 39 +++++++++++++++++++ 1 file changed, 39 insertions(+) create mode 100644 var/spack/repos/builtin/packages/r-illuminaio/package.py diff --git a/var/spack/repos/builtin/packages/r-illuminaio/package.py b/var/spack/repos/builtin/packages/r-illuminaio/package.py new file mode 100644 index 0000000000..c6e429e0a5 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-illuminaio/package.py @@ -0,0 +1,39 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RIlluminaio(RPackage): + """Tools for parsing Illumina's microarray output files, including + IDAT.""" + + homepage = "http://bioconductor.org/packages/illuminaio/" + url = "https://git.bioconductor.org/packages/illuminaio" + list_url = homepage + + version('0.18.0', git='https://git.bioconductor.org/packages/illuminaio', commit='e6b8ab1f8eacb760aebdb4828e9cfbf07da06eda') + + depends_on('r-base64', type=('build', 'run')) + depends_on('r@3.4.0:3.4.9', when='@0.18.0')