* mumps: Fix for problematic src/makefile patch (#20590) Minor change in src/Makefile between 5.2.0 and 5.3.3 causing patch to break. Split into 2 patchfiles * mumps: Additional patch for fixing #20590 This is to fix issue wherein build fails on Ubuntu due to undefined symbols, despite symbols being included in other libraries referenced on the compilation line. I believe the issue is that the inclusion of libsmumps.so was (due to my original patch) causing libmumps_common.so to be automatically loaded, but since libpords.so was not also required, the error was occuring. I have added libpords.so along with libmumps_common.so to be explicit dependencies of libsmumps.so, etc., which seems to resolve the issue.
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3 changed files with 28 additions and 1 deletions
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@ -0,0 +1,24 @@
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diff -Naur spack-src/src/Makefile spack-src.patched/src/Makefile
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--- spack-src/src/Makefile 2020-06-15 05:57:25.000000000 -0400
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+++ spack-src.patched/src/Makefile 2021-01-08 14:43:28.655026604 -0500
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@@ -193,7 +193,7 @@
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$(RANLIB) $@
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$(libdir)/lib$(ARITH)mumps$(PLAT)$(LIBEXT): $(OBJS_MOD) $(OBJS_OTHER)
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- $(AR)$@ $?
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+ $(AR)$@ $? $(EXTRA_LIBS4MUMPS)
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$(RANLIB) $@
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# Dependencies between modules:
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@@ -405,9 +405,9 @@
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.SUFFIXES: .c .F .o
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.F.o:
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- $(FC) $(OPTF) -I. -I../include $(INCS) $(IORDERINGSF) $(ORDERINGSF) -c $*.F $(OUTF)$*.o
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+ $(FC) $(OPTF) $(FC_PIC_FLAG) -I. -I../include $(INCS) $(IORDERINGSF) $(ORDERINGSF) -c $*.F $(OUTF)$*.o
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.c.o:
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- $(CC) $(OPTC) -I../include $(INCS) $(CDEFS) $(IORDERINGSC) $(ORDERINGSC) -c $*.c $(OUTC)$*.o
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+ $(CC) $(OPTC) $(CC_PIC_FLAG) -I../include $(INCS) $(CDEFS) $(IORDERINGSC) $(ORDERINGSC) -c $*.c $(OUTC)$*.o
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$(ARITH)mumps_c.o: mumps_c.c
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$(CC) $(OPTC) -I../include $(INCS) $(CDEFS) -DMUMPS_ARITH=MUMPS_ARITH_$(ARITH) \
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@ -55,7 +55,8 @@ class Mumps(Package):
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patch('gfortran8.patch', when='@5.1.2')
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patch('gfortran8.patch', when='@5.1.2')
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# The following patches src/Makefile to fix some dependency
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# The following patches src/Makefile to fix some dependency
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# issues in lib[cdsz]mumps.so
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# issues in lib[cdsz]mumps.so
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patch('mumps.src-makefile.patch', when='+shared')
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patch('mumps.src-makefile.5.2.patch', when='@5.2.0 +shared')
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patch('mumps.src-makefile.5.3.patch', when='@5.3.0: +shared')
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def write_makefile_inc(self):
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def write_makefile_inc(self):
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if ('+parmetis' in self.spec or '+ptscotch' in self.spec) and (
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if ('+parmetis' in self.spec or '+ptscotch' in self.spec) and (
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@ -79,6 +80,8 @@ def write_makefile_inc(self):
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orderings = ['-Dpord']
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orderings = ['-Dpord']
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# All of the lib[cdsz]mumps.* libs depend on mumps_common
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# All of the lib[cdsz]mumps.* libs depend on mumps_common
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extra_libs4mumps = ['-L$(topdir)/lib', '-lmumps_common']
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extra_libs4mumps = ['-L$(topdir)/lib', '-lmumps_common']
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# and mumps_common depends on pord
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extra_libs4mumps += ['-L$(topdir)/PORD/lib', '-lpord']
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if '+ptscotch' in self.spec or '+scotch' in self.spec:
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if '+ptscotch' in self.spec or '+scotch' in self.spec:
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makefile_conf.extend([
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makefile_conf.extend([
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