diff --git a/var/spack/repos/builtin/packages/r-seqlogo/package.py b/var/spack/repos/builtin/packages/r-seqlogo/package.py new file mode 100644 index 0000000000..c6c77361ee --- /dev/null +++ b/var/spack/repos/builtin/packages/r-seqlogo/package.py @@ -0,0 +1,38 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RSeqlogo(RPackage): + """seqLogo takes the position weight matrix of a DNA sequence motif and + plots the corresponding sequence logo as introduced by Schneider and + Stephens (1990).""" + + homepage = "https://bioconductor.org/packages/seqLogo/" + url = "https://git.bioconductor.org/packages/seqLogo" + + version('1.44.0', git='https://git.bioconductor.org/packages/seqLogo', commit='4cac14ff29f413d6de1a9944eb5d21bfe5045fac') + + depends_on('r@3.4.3:3.4.9', when='@1.44.0')