From f3152a560036ce78047eab9323f79155b84d98cd Mon Sep 17 00:00:00 2001 From: lingnanyuan <1297162327@qq.com> Date: Mon, 25 Sep 2017 20:55:03 -0500 Subject: [PATCH] r-limma: new package. (#5468) * r-limma: Create New Package. * pr-quantities: add version & py-numpy conflict (#5307) * r-limma: Create new package. * r-limma: Correct format. * Update package.py --- .../repos/builtin/packages/r-limma/package.py | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 var/spack/repos/builtin/packages/r-limma/package.py diff --git a/var/spack/repos/builtin/packages/r-limma/package.py b/var/spack/repos/builtin/packages/r-limma/package.py new file mode 100644 index 0000000000..ab2eb9dd05 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-limma/package.py @@ -0,0 +1,35 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RLimma(RPackage): + """Data analysis, linear models and differential expression + for microarray data.""" + + homepage = "https://www.bioconductor.org/packages/limma/" + url = "https://www.bioconductor.org/packages/release/bioc/src/contrib/limma_3.32.6.tar.gz" + list_url = homepage + version('3.32.6', 'df5dc2b85189a24e939efa3a8e6abc41')